SUPERFAMILY 1.75 HMM library and genome assignments server

Reference Species Tree of (Sequenced) Life

(show info)

Search the Tree hierarchy of being mapped onto NCBI taxonomy:
    Using a Taxon ID (e.g., "9606") or a Taxonomic name (e.g., or "Homo sapiens") or a common name (e.g., or "human")
    When searching against a Taxonomic name, it is better to specify its superkingdom (e.g., "E:Homo sapiens").
    Notes: A for Archaea, B for Bacteria, and E for Eukaryota.

    Tips:
    1.) Organisms commonly used in research are: human, mouse, rat, yeast, fission yeast, fruit fly, arabidopsis thaliana, nematode, zebrafish, monkey, Escherichia coli, etc
    2.) Clades of interest: Eukaryota,Viridiplantae,Fungi/Metazoa group,Fungi,Metazoa,Chordata,Mammalia,,Primates, etc.

Gateway: navigating tree hierarchy starting from three superkingdoms (Archaea, Bacteria, Eukaryota)

Name [TaxID] <Branch length>  #Genomes  Tree(Newick format)
Archaea (A):   Archaea [2157] <2.50e-02>   165  Codes|TaxIDs|Names
Bacteria (B):   Bacteria [2] <2.18e-03>   2566  Codes|TaxIDs|Names
Eukaryota (E):   Eukaryota [2759] <3.54e-02>   492  Codes|TaxIDs|Names