SUPERFAMILY 1.75 HMM library and genome assignments server

DAK1/DegV-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   DAK1/DegV-like [ 82548]
Superfamily:   DAK1/DegV-like [ 82549] (2)
Families:   DegV-like [ 82550] (2)
  DAK1 [ 109613] (2)


Superfamily statistics
Genomes (1,787) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,435 32,118 7
Proteins 4,423 32,105 7


Functional annotation
General category Metabolism
Detailed category Polysaccharide metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism metabolic process 0.0621 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0.00001576 Moderately Informative Direct
Biological Process (BP) organic hydroxy compound metabolic process 0.00006985 Moderately Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0.000001084 Informative Direct
Biological Process (BP) alcohol metabolic process 0.00002377 Informative Direct
Biological Process (BP) polyol metabolic process 0.0000001107 Highly Informative Direct
Molecular Function (MF) transferase activity 0.01378 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.0005498 Moderately Informative Direct
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 0.000111 Informative Direct
Molecular Function (MF) kinase activity 0.0002108 Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Lyases0.001465Least InformativeInherited
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor0Moderately InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processGlycerol metabolism0Highly InformativeDirect
Molecular functionFlavoprotein0.03358Moderately InformativeInherited
Molecular functionLipid-binding0InformativeDirect
Molecular functionCobalt0.00001542InformativeDirect
Molecular functionFAD0.000821InformativeDirect
Post-translational modificationTransferase0.4215Least InformativeInherited
Post-translational modificationKinase0.0000001022Moderately InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)alcohol metabolism0Moderately InformativeDirect
UniPathway (UP)fermentation0InformativeDirect
UniPathway (UP)polyol degradation0InformativeDirect
UniPathway (UP)glycerol metabolism0InformativeDirect
UniPathway (UP)glycerol fermentation0.0000000000001415Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a DAK1/DegV-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the DAK1/DegV-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]