SUPERFAMILY 1.75 HMM library and genome assignments server

Mitotic arrest deficient-like 1, Mad1 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Parallel coiled-coil [ 57943] (34)
Superfamily:   Mitotic arrest deficient-like 1, Mad1 [ 75704]
Families:   Mitotic arrest deficient-like 1, Mad1 [ 75705]


Superfamily statistics
Genomes (332) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 456 593 1
Proteins 456 593 1


Functional annotation
General category Processes_IC
Detailed category Cell cycle, Apoptosis

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.00002036 Least Informative Direct
Cellular Component (CC) protein complex 0.00001364 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.822 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.003495 Least Informative Inherited
Cellular Component (CC) cytoskeleton 0.0009761 Moderately Informative Direct
Cellular Component (CC) endomembrane system 0.0000001673 Moderately Informative Direct
Cellular Component (CC) organelle envelope 0.000002699 Moderately Informative Direct
Cellular Component (CC) nuclear part 0.02841 Moderately Informative Inherited
Cellular Component (CC) nuclear envelope 0.000000000003766 Informative Direct
Cellular Component (CC) chromosome 0.0001086 Informative Direct
Cellular Component (CC) microtubule cytoskeleton 0.1185 Informative Inherited
Cellular Component (CC) kinetochore 0.00000000000003023 Highly Informative Direct
Cellular Component (CC) spindle 0.00000244 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell cycle0.000000000000197Moderately InformativeDirect
DomainCoiled coil0.0000000000002462Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Mitotic arrest deficient-like 1, Mad1 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Mitotic arrest deficient-like 1, Mad1 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]