SUPERFAMILY 1.75 HMM library and genome assignments server

Translin superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   Translin [ 74784]
Families:   Translin [ 74785]


Superfamily statistics
Genomes (523) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 1,007 1,136 2
Proteins 993 1,130 2


Functional annotation
General category Information
Detailed category RNA processing

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process0.0014380.005407Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.0073580.01569Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.0013840.004847Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.0028190.008584Least InformativeInherited
Molecular Function (MF)binding0.00056360.0175Least InformativeInherited
Molecular Function (MF)nucleic acid binding0.000000000017710.000001362Moderately InformativeDirect
Molecular Function (MF)DNA binding0.0026590.04918InformativeInherited
Molecular Function (MF)protein complex binding0.000000080330.0000009018Highly InformativeDirect
Molecular Function (MF)structure-specific DNA binding0.00065090.00003523Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.005407 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.01569 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.004847 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.008584 Least Informative Inherited
Molecular Function (MF) binding 0.0175 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 0.000001362 Moderately Informative Direct
Molecular Function (MF) DNA binding 0.04918 Informative Inherited
Molecular Function (MF) protein complex binding 0.0000009018 Highly Informative Direct
Molecular Function (MF) structure-specific DNA binding 0.00003523 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentNucleus0Least InformativeDirect
Molecular functionDNA-binding0.00000000000001179Least InformativeDirect
Molecular functionRNA-binding0.00005557Moderately InformativeDirect
Post-translational modificationHydrolase0.0007779Least InformativeDirect
Post-translational modificationNuclease0.000000002439Moderately InformativeDirect
Post-translational modificationEndonuclease0.0000000001626InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR002848 SSF74784 Protein matches
Abstract

Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-sranded DNA ends generated by staggered breaks occuring at recombination hot spots [PubMed9013868].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Translin domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Translin superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]