SUPERFAMILY 1.75 HMM library and genome assignments server

F1 ATPase inhibitor, IF1, C-terminal domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Antiparallel coiled-coil [ 58086] (17)
Superfamily:   F1 ATPase inhibitor, IF1, C-terminal domain [ 64602]
Families:   F1 ATPase inhibitor, IF1, C-terminal domain [ 64603]


Superfamily statistics
Genomes (258) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 378 394 4
Proteins 375 391 4


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details) Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) organic cyclic compound metabolic process 0.00005639 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 0.00795 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.001801 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 0.006944 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.005491 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.09502 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.005386 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.001086 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.004665 Least Informative Inherited
Biological Process (BP) developmental process 0.007903 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.01592 Least Informative Inherited
Biological Process (BP) regulation of catalytic activity 0.000000000000003755 Moderately Informative Direct
Biological Process (BP) cofactor metabolic process 0.0000000001802 Moderately Informative Direct
Biological Process (BP) organonitrogen compound biosynthetic process 0.0000000005577 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.000000003695 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.000000004066 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.000000004163 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0.000000004177 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0.00000001531 Moderately Informative Direct
Biological Process (BP) cellular component biogenesis 0.00000008462 Moderately Informative Direct
Biological Process (BP) immune system process 0.0000002666 Moderately Informative Direct
Biological Process (BP) organ development 0.00001322 Moderately Informative Direct
Biological Process (BP) cell differentiation 0.00001329 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 0.1253 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 0.007666 Moderately Informative Inherited
Biological Process (BP) negative regulation of catalytic activity 0 Informative Direct
Biological Process (BP) pigment metabolic process 0 Informative Direct
Biological Process (BP) protein oligomerization 0.000000000000007347 Informative Direct
Biological Process (BP) hematopoietic or lymphoid organ development 0.000000000003072 Informative Direct
Biological Process (BP) regulation of cell proliferation 0.002314 Informative Inherited
Biological Process (BP) erythrocyte differentiation 0 Highly Informative Direct
Biological Process (BP) porphyrin-containing compound biosynthetic process 0 Highly Informative Direct
Biological Process (BP) protein tetramerization 0 Highly Informative Direct
Biological Process (BP) protein homooligomerization 0 Highly Informative Direct
Biological Process (BP) heme metabolic process 0 Highly Informative Direct
Biological Process (BP) pigment biosynthetic process 0 Highly Informative Direct
Biological Process (BP) negative regulation of cell proliferation 0.00001298 Highly Informative Direct
Molecular Function (MF) binding 0.001733 Least Informative Inherited
Molecular Function (MF) enzyme regulator activity 0 Moderately Informative Direct
Molecular Function (MF) enzyme inhibitor activity 0 Informative Direct
Molecular Function (MF) enzyme binding 0.0000000007921 Informative Direct
Molecular Function (MF) protein dimerization activity 0.000000101 Informative Direct
Molecular Function (MF) protein homodimerization activity 0.000000000001239 Highly Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.00158 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.004169 Least Informative Inherited
Cellular Component (CC) cell surface 0.000002706 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentMitochondrion0Moderately InformativeDirect
DomainTransit peptide0Moderately InformativeDirect
DomainCoiled coil0.000000000000003027Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a F1 ATPase inhibitor, IF1, C-terminal domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the F1 ATPase inhibitor, IF1, C-terminal domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]