SUPERFAMILY 1.75 HMM library and genome assignments server

Assembly domain of cartilage oligomeric matrix protein superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Parallel coiled-coil [ 57943] (34)
Superfamily:   Assembly domain of cartilage oligomeric matrix protein [ 58006]
Families:   Assembly domain of cartilage oligomeric matrix protein [ 58007]


Superfamily statistics
Genomes (66) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 218 229 2
Proteins 218 228 2


Functional annotation
General category coiled coil
Detailed category The code refers to a Pentameric_coiled_coils in the CC+ database. Please click on the link for more information and to visit the CC+ website.

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) multicellular organismal process 0.00001471 Least Informative Direct
Biological Process (BP) developmental process 0.002372 Least Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.00001461 Moderately Informative Direct
Biological Process (BP) tissue development 0.01326 Moderately Informative Inherited
Biological Process (BP) organ development 0.04674 Moderately Informative Inherited
Biological Process (BP) organ morphogenesis 0.00007403 Informative Direct
Biological Process (BP) growth 0.000002181 Informative Direct
Biological Process (BP) skeletal system development 0.00000006922 Highly Informative Direct
Biological Process (BP) developmental growth 0.000003525 Highly Informative Direct
Biological Process (BP) connective tissue development 0.0000000002486 Highly Informative Direct
Molecular Function (MF) binding 0.002917 Least Informative Inherited
Molecular Function (MF) anion binding 0.000003398 Moderately Informative Direct
Molecular Function (MF) carbohydrate derivative binding 0.000000003132 Informative Direct
Molecular Function (MF) sulfur compound binding 0.00000000101 Informative Direct
Molecular Function (MF) heparin binding 0.000000000001967 Highly Informative Direct
Cellular Component (CC) cytoplasmic part 0.007729 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.5407 Least Informative Inherited
Cellular Component (CC) endoplasmic reticulum 0.00000007222 Moderately Informative Direct
Cellular Component (CC) extracellular region part 0.000000002461 Moderately Informative Direct
Cellular Component (CC) extracellular matrix 0.000000000000003095 Informative Direct
Cellular Component (CC) sarcoplasmic reticulum 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)growth/size/body phenotype0Least InformativeDirect
Mammalian Phenotype (MP)abnormal postnatal growth/weight/body size0Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal total tissue mass0InformativeDirect

Document: MP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell adhesion0InformativeDirect
Biological processUnfolded protein response0Highly InformativeDirect
Cellular componentSecreted0.000000000001572Moderately InformativeDirect
Cellular componentEndoplasmic reticulum0.0000000004515Moderately InformativeDirect
Cellular componentExtracellular matrix0InformativeDirect
Cellular componentSarcoplasmic reticulum0Highly InformativeDirect
DomainRepeat0Least InformativeDirect
DomainSignal0Least InformativeDirect
DomainEGF-like domain0InformativeDirect
Molecular functionCalcium0Moderately InformativeDirect
Post-translational modificationGrowth factor0.00000000000000482InformativeDirect
Post-translational modificationMitogen0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationDisulfide bond0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Assembly domain of cartilage oligomeric matrix protein domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Assembly domain of cartilage oligomeric matrix protein superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · UniProtKB KeyWords (KW) · Internal database links ]