SUPERFAMILY 1.75 HMM library and genome assignments server


Aromatic aminoacid monoxygenases, catalytic and oligomerization domains superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Aromatic aminoacid monoxygenases, catalytic and oligomerization domains [ 56533]
Superfamily:   Aromatic aminoacid monoxygenases, catalytic and oligomerization domains [ 56534]
Families:   Aromatic aminoacid monoxygenases, catalytic and oligomerization domains [ 56535] (3)


Superfamily statistics
Genomes (490) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 951 1,878 10
Proteins 926 1,869 10


Functional annotation
General category coiled coil
Detailed category This is a complex coiled arrangement. The details of which will appear on this page shortly (some coiled coil details are being checked before they are included on the site). If you want to see examples of the states please click here here. If you require further details urgently please contact Owen Rackham

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Molecular Function (MF)oxidoreductase activity00Moderately InformativeDirect
Molecular Function (MF)monooxygenase activity00Highly InformativeDirect
Molecular Function (MF)oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxyge00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 4.008e-15 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 4.032e-14 Least Informative Direct
Biological Process (BP) single-organism metabolic process 6.002e-09 Least Informative Direct
Biological Process (BP) biosynthetic process 6.689e-09 Least Informative Direct
Biological Process (BP) multicellular organismal process 4.991e-06 Least Informative Direct
Biological Process (BP) developmental process 0.0001127 Least Informative Direct
Biological Process (BP) response to stimulus 0.005276 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.2334 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 5.43e-14 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 5.531e-13 Moderately Informative Direct
Biological Process (BP) organonitrogen compound biosynthetic process 1.551e-12 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 7.424e-12 Moderately Informative Direct
Biological Process (BP) organic hydroxy compound metabolic process 4.893e-10 Moderately Informative Direct
Biological Process (BP) regulation of multicellular organismal process 1.115e-05 Moderately Informative Direct
Biological Process (BP) single-organism developmental process 0.0001469 Moderately Informative Direct
Biological Process (BP) reproduction 0.0004453 Moderately Informative Direct
Biological Process (BP) multi-organism process 0.0004621 Moderately Informative Direct
Biological Process (BP) small molecule biosynthetic process 0.0008299 Moderately Informative Direct
Biological Process (BP) organ development 0.0124 Moderately Informative Inherited
Biological Process (BP) system process 0.006985 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 0.1194 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.1319 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.197 Moderately Informative Inherited
Biological Process (BP) organic substance catabolic process 0.2871 Moderately Informative Inherited
Biological Process (BP) cellular biogenic amine metabolic process 1.087e-12 Informative Direct
Biological Process (BP) single-organism behavior 1.058e-11 Informative Direct
Biological Process (BP) organic hydroxy compound biosynthetic process 1.302e-09 Informative Direct
Biological Process (BP) multi-organism reproductive process 7.806e-08 Informative Direct
Biological Process (BP) synaptic transmission 1.303e-07 Informative Direct
Biological Process (BP) gland development 0.0009504 Informative Direct
Biological Process (BP) carboxylic acid catabolic process 0.005091 Informative Inherited
Biological Process (BP) organonitrogen compound catabolic process 0.3277 Informative Inherited
Biological Process (BP) regulation of system process 0.02059 Informative Inherited
Biological Process (BP) cardiovascular system development 0.002428 Informative Inherited
Biological Process (BP) phenol-containing compound metabolic process 2.081e-14 Highly Informative Direct
Biological Process (BP) diol metabolic process 6.808e-13 Highly Informative Direct
Biological Process (BP) mammary gland alveolus development 3.704e-10 Highly Informative Direct
Biological Process (BP) multi-organism behavior 4.902e-08 Highly Informative Direct
Biological Process (BP) indole-containing compound biosynthetic process 3.516e-07 Highly Informative Direct
Biological Process (BP) aromatic amino acid family catabolic process 0.0005083 Highly Informative Direct
Biological Process (BP) aging 0.0005576 Highly Informative Direct
Molecular Function (MF) oxidoreductase activity 0 Moderately Informative Direct
Molecular Function (MF) monooxygenase activity 0 Highly Informative Direct
Molecular Function (MF) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxyge 0 Highly Informative Direct
Cellular Component (CC) cell projection 5.847e-07 Moderately Informative Direct
Cellular Component (CC) neuron part 8.945e-09 Informative Direct
Cellular Component (CC) cell body 5.319e-08 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or red0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)cognitive disorder0Moderately InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)abnormal homeostasis0Least InformativeDirect
Mammalian Phenotype (MP)cardiovascular system phenotype0.0357Least InformativeInherited
Mammalian Phenotype (MP)abnormal postnatal growth/weight/body size0Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal hormone level0Moderately InformativeDirect
Mammalian Phenotype (MP)behavior/neurological phenotype0Moderately InformativeDirect
Mammalian Phenotype (MP)respiratory system phenotype0.00699Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular system physiology0.0113Moderately InformativeInherited
Mammalian Phenotype (MP)integument phenotype0.01332Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal heartbeat3.696e-05InformativeDirect
Mammalian Phenotype (MP)abnormal respiration0.0007696InformativeDirect
Mammalian Phenotype (MP)abnormal touch/ nociception0.004339InformativeInherited
Mammalian Phenotype (MP)abnormal serotonin level0Highly InformativeDirect
Mammalian Phenotype (MP)abnormal thermal nociception3.657e-06Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0Least InformativeDirect
Worm Phenotype (WP)chemical response variant0Moderately InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)behavior defective0Moderately InformativeDirect
Fly Phenotype (FP)feeding behavior defective0Highly InformativeDirect

Document: FP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or reduction of molecular oxygen0InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processPhenylalanine catabolism0Highly InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionIron0Moderately InformativeDirect
Post-translational modificationOxidoreductase0Moderately InformativeDirect
Post-translational modificationMonooxygenase0Highly InformativeDirect
Post-translational modificationPhosphoprotein5.008e-13Least InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)aromatic compound metabolism1.735e-08Least InformativeDirect
UniPathway (UP)amino-acid metabolism1.103e-06Least InformativeDirect
UniPathway (UP)amino-acid degradation0Moderately InformativeDirect
UniPathway (UP)aromatic compound biosynthesis0Moderately InformativeDirect
UniPathway (UP)amine and polyamine metabolism3.082e-11Moderately InformativeDirect
UniPathway (UP)amine and polyamine biosynthesis1.328e-15InformativeDirect
UniPathway (UP)tryptophan metabolism3.228e-06InformativeDirect
UniPathway (UP)catecholamine biosynthesis0Highly InformativeDirect
UniPathway (UP)L-phenylalanine degradation2.269e-11Highly InformativeDirect
UniPathway (UP)L-tryptophan degradation2.009e-10Highly InformativeDirect

Document: UP annotation of SCOP domains

InterPro annotation
Cross references IPR001273 SSF56534 Protein matches
Abstract

Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways [PubMed3475690]. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains.

A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [PubMed9406548], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Aromatic aminoacid monoxygenases, catalytic and oligomerization domains domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Aromatic aminoacid monoxygenases, catalytic and oligomerization domains superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]