SUPERFAMILY 1.75 HMM library and genome assignments server

Molybdenum cofactor biosynthesis protein C, MoaC superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ferredoxin-like [ 54861] (59)
Superfamily:   Molybdenum cofactor biosynthesis protein C, MoaC [ 55040]
Families:   Molybdenum cofactor biosynthesis protein C, MoaC [ 55041]


Superfamily statistics
Genomes (2,192) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 2,364 13,330 2
Proteins 2,347 13,302 2


Functional annotation
General category Metabolism
Detailed category Coenzyme metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000000002449 Least Informative Direct
Biological Process (BP) protein metabolic process 0.000000003296 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.000000003918 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.00000000989 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 0.00000002711 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0000001342 Least Informative Direct
Biological Process (BP) cofactor metabolic process 0 Moderately Informative Direct
Biological Process (BP) organonitrogen compound biosynthetic process 0.00000000000001264 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.0000000000001271 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0.0000000000001827 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0.000000000000579 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.00000000008857 Moderately Informative Direct
Biological Process (BP) coenzyme biosynthetic process 0.01041 Informative Inherited
Biological Process (BP) molybdopterin cofactor metabolic process 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0.0000001948Least InformativeDirect
Enzyme Commission (EC)Carbon-carbon lyases0.00000000007242Moderately InformativeDirect
Enzyme Commission (EC)Other carbon-carbon lyases0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processMolybdenum cofactor biosynthesis0Highly InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)cofactor metabolism0Least InformativeDirect
UniPathway (UP)molybdopterin biosynthesis0Highly InformativeDirect

Document: UP annotation of SCOP domains

InterPro annotation
Cross references IPR002820 SSF55040 Protein matches
Abstract

This entry contain the molybdenum cofactor biosynthesis protein MoaC.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Molybdenum cofactor biosynthesis protein C, MoaC domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Molybdenum cofactor biosynthesis protein C, MoaC superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]