SUPERFAMILY 1.75 HMM library and genome assignments server

Ribosomal protein S16 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein S16 [ 54564]
Superfamily:   Ribosomal protein S16 [ 54565]
Families:   Ribosomal protein S16 [ 54566]


Superfamily statistics
Genomes (3,000) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 3,180 18,517 8
Proteins 3,179 18,514 8


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular macromolecule metabolic process0.0000010740.00001087Least InformativeDirect
Biological Process (BP)biosynthetic process0.0017180.006573Least InformativeInherited
Biological Process (BP)protein metabolic process0.01970.1073Least InformativeInherited
Biological Process (BP)gene expression0.00018850.0001443Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.00050660.005838Moderately InformativeInherited
Molecular Function (MF)structural molecule activity0.0000000000087380.00000000002683Moderately InformativeDirect
Molecular Function (MF)structural constituent of ribosome0.000000000000057330.00000000000002751InformativeDirect
Cellular Component (CC)cytoplasmic part0.000010250.00001226Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0067150.04346Least InformativeInherited
Cellular Component (CC)intracellular non-membrane-bounded organelle0.00088110.009398Least InformativeInherited
Cellular Component (CC)ribonucleoprotein complex0.000000053010.0000002099Moderately InformativeDirect
Cellular Component (CC)small ribosomal subunit0.0000000000019980.0000000000004396InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular macromolecule metabolic process 0.00001087 Least Informative Direct
Biological Process (BP) biosynthetic process 0.006573 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.1073 Least Informative Inherited
Biological Process (BP) gene expression 0.0001443 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.005838 Moderately Informative Inherited
Molecular Function (MF) structural molecule activity 0.00000000002683 Moderately Informative Direct
Molecular Function (MF) structural constituent of ribosome 0.00000000000002751 Informative Direct
Cellular Component (CC) cytoplasmic part 0.00001226 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.04346 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.009398 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.421 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 0.0000002099 Moderately Informative Direct
Cellular Component (CC) small ribosomal subunit 0.0000000000004396 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0.00000000000001006Moderately InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000307 SSF54565 Protein matches
Abstract

Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups:

  • Eubacterial S16.
  • Algal and plant chloroplast S16.
  • Cyanelle S16.
  • Neurospora crassa mitochondrial S24 (cyt-21).
S16 proteins have about 100 amino-acid residues.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S16 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Ribosomal protein S16 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]