SUPERFAMILY 1.75 HMM library and genome assignments server

N-(deoxy)ribosyltransferase-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Flavodoxin-like [ 52171] (15)
Superfamily:   N-(deoxy)ribosyltransferase-like [ 52309] (3)
Families:   N-deoxyribosyltransferase [ 52310] (2)
  Hypothetical protein PA1492 [ 110461]
  ADP ribosyl cyclase-like [ 56630] (2)


Superfamily statistics
Genomes (792) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 1,214 5,454 8
Proteins 1,205 5,440 8


Functional annotation
General category Metabolism
Detailed category Nucleotide metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process0.000000000013920.00000006257Least InformativeDirect
Biological Process (BP)single-organism metabolic process0.0000000058470.0009614Least InformativeDirect
Biological Process (BP)heterocycle metabolic process0.000000000012770.0000000491Least InformativeDirect
Biological Process (BP)organic cyclic compound metabolic process0.000000000063850.0000001745Least InformativeDirect
Biological Process (BP)regulation of cellular process0.0013230.003563Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.00000000060410.001716Least InformativeInherited
Biological Process (BP)phosphate-containing compound metabolic process0.00000000000010720.0000000002443Moderately InformativeDirect
Biological Process (BP)organophosphate metabolic process00.00000000000003126Moderately InformativeDirect
Biological Process (BP)cellular catabolic process0.000000000000012530.000000000005433Moderately InformativeDirect
Biological Process (BP)positive regulation of cellular process0.0000010680.00003854Moderately InformativeDirect
Biological Process (BP)regulation of cellular component organization0.0000000017770.00001085Moderately InformativeDirect
Biological Process (BP)nucleobase-containing small molecule metabolic process00Moderately InformativeDirect
Biological Process (BP)organic substance catabolic process0.00000000000014140.00000000003212Moderately InformativeDirect
Biological Process (BP)nucleoside monophosphate metabolic process00InformativeDirect
Biological Process (BP)nucleobase-containing compound catabolic process00InformativeDirect
Biological Process (BP)regulation of growth0.0000000000056350.000000005453InformativeDirect
Biological Process (BP)organophosphate catabolic process00InformativeDirect
Biological Process (BP)nucleoside monophosphate catabolic process00Highly InformativeDirect
Biological Process (BP)deoxyribonucleoside monophosphate metabolic process00Highly InformativeDirect
Biological Process (BP)positive regulation of growth00.00000000006944Highly InformativeDirect
Molecular Function (MF)hydrolase activity0.0000000000086120.0000000000000162Least InformativeDirect
Molecular Function (MF)hydrolase activity, acting on glycosyl bonds00InformativeDirect
Molecular Function (MF)hydrolase activity, hydrolyzing N-glycosyl compounds00.0000000000003847Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.00000006257 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.0009614 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.0000000491 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.0000001745 Least Informative Direct
Biological Process (BP) regulation of cellular process 0.003563 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.001716 Least Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.0000000002443 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0.00000000000003126 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 0.000000000005433 Moderately Informative Direct
Biological Process (BP) positive regulation of cellular process 0.00003854 Moderately Informative Direct
Biological Process (BP) regulation of cellular component organization 0.00001085 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 0 Moderately Informative Direct
Biological Process (BP) organic substance catabolic process 0.00000000003212 Moderately Informative Direct
Biological Process (BP) nucleoside monophosphate metabolic process 0 Informative Direct
Biological Process (BP) nucleobase-containing compound catabolic process 0 Informative Direct
Biological Process (BP) regulation of growth 0.000000005453 Informative Direct
Biological Process (BP) organophosphate catabolic process 0 Informative Direct
Biological Process (BP) nucleoside monophosphate catabolic process 0 Highly Informative Direct
Biological Process (BP) deoxyribonucleoside monophosphate metabolic process 0 Highly Informative Direct
Biological Process (BP) positive regulation of growth 0.00000000006944 Highly Informative Direct
Molecular Function (MF) hydrolase activity 0.0000000000000162 Least Informative Direct
Molecular Function (MF) hydrolase activity, acting on glycosyl bonds 0 Informative Direct
Molecular Function (MF) hydrolase activity, hydrolyzing N-glycosyl compounds 0.0000000000003847 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolyzing N-glycosyl compounds0InformativeDirect

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0.000003671Least InformativeDirect
Enzyme Commission (EC)Glycosylases0Moderately InformativeDirect
Enzyme Commission (EC)Glycosyltransferases0.00000000000004693Moderately InformativeDirect
Enzyme Commission (EC)Pentosyltransferases1InformativeInherited
Enzyme Commission (EC)Hydrolyzing N-glycosyl compounds0Highly InformativeDirect
Enzyme Commission (EC)Transferring other glycosyl groups0.00000007209Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processNucleotide metabolism0Highly InformativeDirect
Cellular componentNucleus0.000001892Least InformativeDirect
DomainTransmembrane0.1376Least InformativeInherited
DomainSignal-anchor0.00000009766InformativeDirect
Molecular functionNAD0.00000001226Moderately InformativeDirect
Molecular functionNADP0.0000000008086InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationGlycosidase0.0000000000003493InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)nucleotide metabolism0Moderately InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 7 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a N-(deoxy)ribosyltransferase-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 7 hidden Markov models representing the N-(deoxy)ribosyltransferase-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]