SUPERFAMILY 1.75 HMM library and genome assignments server

Ribosomal proteins L15p and L18e superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Ribosomal proteins L15p and L18e [ 52079]
Superfamily:   Ribosomal proteins L15p and L18e [ 52080]
Families:   Ribosomal proteins L15p and L18e [ 52081] (2)


Superfamily statistics
Genomes (3,235) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 5,192 19,287 12
Proteins 5,182 19,272 12


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.00058940.000000000000327Least InformativeDirect
Biological Process (BP)protein metabolic process0.00011290.0000006603Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process0.0007230.00001182Least InformativeDirect
Biological Process (BP)gene expression0.00000018450Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.000000096950.00000000000007357Moderately InformativeDirect
Molecular Function (MF)structural molecule activity0.00000000079010Moderately InformativeDirect
Molecular Function (MF)structural constituent of ribosome0.000000000028730InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle0.000000053780.0000000001643Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0007030.0002225Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.082590.000001509Least InformativeInherited
Cellular Component (CC)ribonucleoprotein complex0.00000000031710Moderately InformativeDirect
Cellular Component (CC)cytosol0.031360.04394Moderately InformativeInherited
Cellular Component (CC)large ribosomal subunit0.000000000000021270InformativeDirect
Cellular Component (CC)cytosolic ribosome0.27950.2134InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000000000000327 Least Informative Direct
Biological Process (BP) protein metabolic process 0.0000006603 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.00001182 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) gene expression 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00000000000007357 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.5926 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 0.5782 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.5624 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 0.7196 Moderately Informative Inherited
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Molecular Function (MF) structural constituent of ribosome 0 Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.0000000001643 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.000001509 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0002225 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 0 Moderately Informative Direct
Cellular Component (CC) cytosol 0.04394 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 0.507 Moderately Informative Inherited
Cellular Component (CC) mitochondrial part 0.02063 Moderately Informative Inherited
Cellular Component (CC) mitochondrial matrix 0.0001837 Informative Direct
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.2134 Informative Inherited
Cellular Component (CC) mitochondrial ribosome 0.0000299 Highly Informative Direct

Document: GO annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)male organism0Least InformativeDirect
Xenopus ANatomical entity (XAN)cell0Least InformativeDirect
Xenopus ANatomical entity (XAN)portion of tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)gonad0Least InformativeDirect
Xenopus ANatomical entity (XAN)ectoderm0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)ovary0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)gamete0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)anatomical entity in vitro0InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Molecular functionRNA-binding0Moderately InformativeDirect
Molecular functionrRNA-binding0InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationHydroxylation0.00001241InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal proteins L15p and L18e domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the Ribosomal proteins L15p and L18e superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]