SUPERFAMILY 1.75 HMM library and genome assignments server


Tetraspanin superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Tetraspanin [ 48651]
Superfamily:   Tetraspanin [ 48652]
Families:   Tetraspanin [ 48653]


Superfamily statistics
Genomes (192) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 4,035 3,883 1
Proteins 4,020 3,871 1


Functional annotation
General category Processes_EC
Detailed category Immune response

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.8177 Least Informative Inherited
Biological Process (BP) developmental process 0.6536 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.9955 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of response to stimulus 0.0005564 Moderately Informative Direct
Biological Process (BP) regulation of developmental process 0.9568 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.8 Moderately Informative Inherited
Biological Process (BP) regulation of molecular function 0.4323 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 0.2776 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.9175 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.9359 Moderately Informative Inherited
Biological Process (BP) multi-organism process 0.3245 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.07817 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.9619 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.6488 Moderately Informative Inherited
Biological Process (BP) system process 0.3195 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.8889 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.6411 Moderately Informative Inherited
Biological Process (BP) reproduction 0.404 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) regulation of cell communication 0.08197 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 0.07947 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.5489 Moderately Informative Inherited
Biological Process (BP) lipid biosynthetic process 0.009592 Moderately Informative Inherited
Biological Process (BP) cellular lipid metabolic process 0.09828 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.1592 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) homeostatic process 0.3617 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.9806 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 0.8037 Moderately Informative Inherited
Biological Process (BP) regulation of cell proliferation 2.755e-07 Informative Direct
Biological Process (BP) regulation of immune effector process 4.763e-07 Informative Direct
Biological Process (BP) biological adhesion 1.544e-06 Informative Direct
Biological Process (BP) regulation of lipid metabolic process 3.936e-06 Informative Direct
Biological Process (BP) positive regulation of signal transduction 1.247e-05 Informative Direct
Biological Process (BP) glycerolipid metabolic process 1.598e-05 Informative Direct
Biological Process (BP) phospholipid metabolic process 0.0001013 Informative Direct
Biological Process (BP) cell activation 0.0001986 Informative Direct
Biological Process (BP) regulation of body fluid levels 0.0002055 Informative Direct
Biological Process (BP) cellular component movement 0.000226 Informative Direct
Biological Process (BP) cellular membrane organization 0.0003015 Informative Direct
Biological Process (BP) sexual reproduction 0.0007523 Informative Direct
Biological Process (BP) cellular process involved in reproduction 0.0009818 Informative Direct
Biological Process (BP) sensory organ development 0.004945 Informative Inherited
Biological Process (BP) organ morphogenesis 0.4907 Informative Inherited
Biological Process (BP) regulation of response to stress 0.1411 Informative Inherited
Biological Process (BP) positive regulation of protein metabolic process 0.01378 Informative Inherited
Biological Process (BP) positive regulation of phosphorus metabolic process 0.00266 Informative Inherited
Biological Process (BP) regulation of protein phosphorylation 0.009816 Informative Inherited
Biological Process (BP) regulation of kinase activity 0.001802 Informative Inherited
Biological Process (BP) positive regulation of catalytic activity 0.02546 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 0.12 Informative Inherited
Biological Process (BP) response to other organism 0.01181 Informative Inherited
Biological Process (BP) defense response 0.03056 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.00279 Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.4108 Informative Inherited
Biological Process (BP) developmental process involved in reproduction 0.6573 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 0.7907 Informative Inherited
Biological Process (BP) localization of cell 0.04606 Informative Inherited
Biological Process (BP) locomotion 0.4336 Informative Inherited
Biological Process (BP) response to wounding 0.008361 Informative Inherited
Biological Process (BP) single organism reproductive process 0.002023 Informative Inherited
Biological Process (BP) regulation of immune response 0.6413 Informative Inherited
Biological Process (BP) positive regulation of immune system process 0.03687 Informative Inherited
Biological Process (BP) regulation of intracellular protein kinase cascade 0.03624 Informative Inherited
Biological Process (BP) protein phosphorylation 0.05164 Informative Inherited
Biological Process (BP) positive regulation of lipid metabolic process 1.585e-09 Highly Informative Direct
Biological Process (BP) negative regulation of immune system process 9.11e-09 Highly Informative Direct
Biological Process (BP) retina development in camera-type eye 1.539e-08 Highly Informative Direct
Biological Process (BP) phosphatidylinositol metabolic process 5.016e-08 Highly Informative Direct
Biological Process (BP) glycerophospholipid biosynthetic process 1.026e-07 Highly Informative Direct
Biological Process (BP) regulation of peptidyl-tyrosine phosphorylation 1.179e-07 Highly Informative Direct
Biological Process (BP) regulation of multi-organism process 2.194e-07 Highly Informative Direct
Biological Process (BP) cell adhesion 3.136e-07 Highly Informative Direct
Biological Process (BP) positive regulation of protein serine/threonine kinase activity 1.346e-06 Highly Informative Direct
Biological Process (BP) negative regulation of cell proliferation 1.709e-06 Highly Informative Direct
Biological Process (BP) activation of protein kinase activity 1.733e-06 Highly Informative Direct
Biological Process (BP) regulation of MAP kinase activity 3.579e-06 Highly Informative Direct
Biological Process (BP) coagulation 7.436e-06 Highly Informative Direct
Biological Process (BP) hemostasis 8.629e-06 Highly Informative Direct
Biological Process (BP) fertilization 1.296e-05 Highly Informative Direct
Biological Process (BP) regulation of angiogenesis 3.072e-05 Highly Informative Direct
Biological Process (BP) regulation of membrane potential 7.265e-05 Highly Informative Direct
Biological Process (BP) cellular component assembly involved in morphogenesis 0.0001153 Highly Informative Direct
Biological Process (BP) eye morphogenesis 0.0007208 Highly Informative Direct
Biological Process (BP) cellular membrane fusion 0.0009603 Highly Informative Direct
Biological Process (BP) wound healing 0.005786 Highly Informative Inherited
Biological Process (BP) positive regulation of MAPK cascade 0.006559 Highly Informative Inherited
Biological Process (BP) female gamete generation 0.01134 Highly Informative Inherited
Biological Process (BP) positive regulation of immune effector process 0.01626 Highly Informative Inherited
Molecular Function (MF) molecular transducer activity 0.2168 Informative Inherited
Molecular Function (MF) receptor activity 0.4495 Informative Inherited
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) protein complex 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) intrinsic to membrane 0 Moderately Informative Direct
Cellular Component (CC) plasma membrane 1.225e-05 Moderately Informative Direct
Cellular Component (CC) integral to membrane 0 Informative Direct
Cellular Component (CC) cell surface 0.000803 Informative Direct
Cellular Component (CC) intrinsic to plasma membrane 1 Informative Inherited
Cellular Component (CC) vacuole 0.007501 Informative Inherited
Cellular Component (CC) lysosome 3.506e-05 Highly Informative Direct
Cellular Component (CC) receptor complex 0.0005934 Highly Informative Direct
Cellular Component (CC) integral to plasma membrane 1 Highly Informative Inherited

Document: GO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cardiovascular system phenotype0.2662Least InformativeInherited
Mammalian Phenotype (MP)abnormal blood vessel morphology0.05334Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal eye morphology0.135Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal retinal neuronal layer morphology0.005747InformativeInherited
Mammalian Phenotype (MP)thin retinal outer nuclear layer0.0001009Highly InformativeDirect
Mammalian Phenotype (MP)abnormal retinal vasculature morphology0.0007149Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)cell0.2141Least InformativeInherited
Fly Anatomy (FA)portion of tissue0.1194Moderately InformativeInherited
Fly Anatomy (FA)developing material anatomical entity0.4967Moderately InformativeInherited
Fly Anatomy (FA)sensory mother cell6.697e-05Highly InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0.158Least InformativeInherited
Xenopus ANatomical entity (XAN)portion of tissue0.6339Least InformativeInherited
Xenopus ANatomical entity (XAN)ectoderm0.6891Moderately InformativeInherited
Xenopus ANatomical entity (XAN)sensory system1Moderately InformativeInherited
Xenopus ANatomical entity (XAN)otic vesicle0.000204InformativeDirect
Xenopus ANatomical entity (XAN)neural plate0.05173InformativeInherited
Xenopus ANatomical entity (XAN)optic field9.925e-05Highly InformativeDirect

Document: XA annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell adhesion0InformativeDirect
Biological processAngiogenesis1.727e-08InformativeDirect
Biological processFertilization4.622e-16Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentEndosome0.0003951Moderately InformativeDirect
Cellular componentLysosome1.056e-14InformativeDirect
DomainTransmembrane0Least InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationPalmitate0Moderately InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR008952 SSF48652 Protein matches
Abstract

Tetraspanins are a distinct family of proteins, containing four transmembrane domains: a small outer loop (EC1), a larger outer loop (EC2), a small inner loop (IL) and short cytoplasmic tails. They contain characteristic structural features, including 4-6 conserved extracellular cysteine residues, and polar residues within transmembrane domains.

A fundamental role of tetraspanins appears to be organizing other proteins into a network of multimolecular membrane microdomains, sometimes called the `tetraspanin web'. Within this web there are primary complexes in which tetraspanins show robust, specific, and direct lateral associations with other proteins. The strong tendency of tetraspanins to associate with each other probably contributes to the assembly of a network of secondary interactions in which non-tetraspanin proteins are associated with each other via palmitoylated tetraspanins acting as linker proteins. In addition, the association of lipids, such as gangliosides and cholesterol, probably contributes to the assembly of even larger tetraspanin complexes, which have some lipid raft-like properties (e.g. resistance to solubilization in non-ionic detergents). Within the tetraspanin web, tetraspanin proteins can associate not only with integrins and other transmembrane proteins, but also with signalling enzymes such as protein kinase C and phosphatidylinositol-4 kinase. Thus, the tetraspanin web provides a mechanistic framework by which membrane protein signalling can be expanded into a lateral dimension [PubMed12575999].

The tetraspanin domain consists of 5 helices in an irregular disulphide-linked array which plays a role in form homodimerization.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Tetraspanin domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Tetraspanin superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) · Internal database links ]