SUPERFAMILY 1.75 HMM library and genome assignments server

Ribosomal protein L19 (L19e) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Ribosomal protein L19 (L19e) [ 48139]
Superfamily:   Ribosomal protein L19 (L19e) [ 48140]
Families:   Ribosomal protein L19 (L19e) [ 48141]


Superfamily statistics
Genomes (645) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 1,055 1,348 3
Proteins 1,047 1,343 3


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Cellular Component (CC)intracellular non-membrane-bounded organelle0.000025610.00000001598Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.00040550.00267Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.32120.05919Least InformativeInherited
Cellular Component (CC)ribonucleoprotein complex0.000031560.00000001224Moderately InformativeDirect
Cellular Component (CC)cytosol0.0017310.00004417Moderately InformativeInherited
Cellular Component (CC)large ribosomal subunit0.000000029240.000000000000003095InformativeDirect
Cellular Component (CC)cytosolic ribosome0.00000026320.001985InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.0003826 Least Informative Direct
Biological Process (BP) protein metabolic process 0.005304 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.005578 Least Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 0.002013 Moderately Informative Inherited
Biological Process (BP) gene expression 0.006641 Moderately Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.00000001598 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.00267 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.05919 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 0.00000001224 Moderately Informative Direct
Cellular Component (CC) cytosol 0.00004417 Moderately Informative Direct
Cellular Component (CC) large ribosomal subunit 0.000000000000003095 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.001985 Informative Inherited

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)shoot axis0Least InformativeDirect
Plant ANatomical entity (PAN)collective phyllome structure0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)root system0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0Least InformativeDirect
Plant ANatomical entity (PAN)portion of meristem tissue0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)whole plant0Least InformativeDirect
Plant ANatomical entity (PAN)leaf0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)cotyledon0Moderately InformativeDirect
Plant ANatomical entity (PAN)inflorescence meristem0Moderately InformativeDirect
Plant ANatomical entity (PAN)gamete0InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Molecular functionRNA-binding0.00000002644Moderately InformativeDirect
Molecular functionrRNA-binding0.00000000005153InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000196 SSF48140 Protein matches
Abstract

This entry represents the ribosomal protein L19 from eukaryotes, as well as L19e from archaea [PubMed10381320]. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species [PubMed15184028]. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L19 (L19e) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Ribosomal protein L19 (L19e) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]