SUPERFAMILY 1.75 HMM library and genome assignments server

RILP dimerisation region superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Parallel coiled-coil [ 57943] (34)
Superfamily:   RILP dimerisation region [ 161256]
Families:   RILP dimerisation region [ 161257]


Superfamily statistics
Genomes (125) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 285 314 1
Proteins 285 313 1


Functional annotation
Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0.0000000000008068 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.000000000003848 Least Informative Direct
Biological Process (BP) developmental process 0.0000000001072 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.000000003501 Least Informative Direct
Biological Process (BP) regulation of cellular process 0.0365 Least Informative Inherited
Biological Process (BP) organic substance transport 0 Moderately Informative Direct
Biological Process (BP) anatomical structure morphogenesis 0 Moderately Informative Direct
Biological Process (BP) macromolecule localization 0 Moderately Informative Direct
Biological Process (BP) cell differentiation 0.000000000000001938 Moderately Informative Direct
Biological Process (BP) cellular localization 0.0000000000007507 Moderately Informative Direct
Biological Process (BP) tissue development 0.0000002555 Moderately Informative Direct
Biological Process (BP) epithelium development 0 Informative Direct
Biological Process (BP) cellular component morphogenesis 0 Informative Direct
Biological Process (BP) protein transport 0 Informative Direct
Biological Process (BP) epithelial cell development 0.0000000000001488 Highly Informative Direct
Biological Process (BP) cell morphogenesis involved in differentiation 0.000001596 Highly Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.0000000003543 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.000000647 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.000001283 Least Informative Direct
Cellular Component (CC) cytoskeleton 0 Moderately Informative Direct
Cellular Component (CC) cell projection 0.000000000000004609 Moderately Informative Direct
Cellular Component (CC) microtubule cytoskeleton 0 Informative Direct
Cellular Component (CC) centrosome 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processProtein transport0Moderately InformativeDirect
Cellular componentCytoplasm0.00123Least InformativeInherited
Cellular componentCytoskeleton0Moderately InformativeDirect
Cellular componentCell projection0Moderately InformativeDirect
Cellular componentCilium0Highly InformativeDirect
DomainCoiled coil0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a RILP dimerisation region domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the RILP dimerisation region superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]