SUPERFAMILY 1.75 HMM library and genome assignments server

occludin/ELL-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Antiparallel coiled-coil [ 58086] (17)
Superfamily:   occludin/ELL-like [ 144292]
Families:   Occludin/ELL domain [ 144293]


Superfamily statistics
Genomes (164) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 680 743 2
Proteins 678 739 2


Functional annotation
General category Information
Detailed category Transcription

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) heterocycle metabolic process 0.00006247 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 0.00007534 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.0001656 Least Informative Direct
Biological Process (BP) biosynthetic process 0.0001811 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 0.000464 Least Informative Direct
Biological Process (BP) regulation of cellular process 0.4058 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.002403 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.07565 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.08116 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.006796 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 0.03827 Least Informative Inherited
Biological Process (BP) RNA metabolic process 0.00000005076 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00000005859 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.0000001323 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0.0000001527 Moderately Informative Direct
Biological Process (BP) gene expression 0.0000001573 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.0000001739 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0.0000005356 Moderately Informative Direct
Biological Process (BP) regulation of macromolecule biosynthetic process 0.0009574 Moderately Informative Direct
Biological Process (BP) system process 0.005787 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 0.001436 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.002141 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.002276 Moderately Informative Inherited
Biological Process (BP) transcription, DNA-dependent 0.0000000000003687 Informative Direct
Biological Process (BP) transcription from RNA polymerase II promoter 0.000000000000003755 Highly Informative Direct
Biological Process (BP) cell junction organization 0.000000000001172 Highly Informative Direct
Biological Process (BP) sensory perception 0.00000001195 Highly Informative Direct
Cellular Component (CC) protein complex 0.002935 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.08975 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle lumen 0.0001183 Moderately Informative Direct
Cellular Component (CC) nuclear part 0.000203 Moderately Informative Direct
Cellular Component (CC) cell junction 0.00000000000001901 Informative Direct
Cellular Component (CC) nucleoplasm part 0.000000005157 Informative Direct

Document: GO annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTranscription regulation0.00000003116Moderately InformativeDirect
Cellular componentNucleus0.00006926Least InformativeDirect
Cellular componentCell junction0Moderately InformativeDirect
Cellular componentTight junction0Highly InformativeDirect
DomainTransmembrane0.000005703Least InformativeDirect
DomainCoiled coil3.091e-16Moderately InformativeDirect
Post-translational modificationPhosphoprotein0.000000000001622Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a occludin/ELL-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the occludin/ELL-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) · Internal database links ]