SUPERFAMILY 1.75 HMM library and genome assignments server

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AXH domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   AXH domain [ 102030]
Superfamily:   AXH domain [ 102031]
Families:   AXH domain [ 102032]

 Superfamily statistics
Genomes (107) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 270 248 1
Proteins 270 248 1

 Functional annotation
General category Regulation
Detailed category RNA binding, metabolism and transport

Document: Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of metabolic process 0.04923 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.0111 Least Informative Inherited
Biological Process (BP) regulation of biosynthetic process 0.0005064 Moderately Informative Direct
Biological Process (BP) regulation of gene expression 0.0006398 Moderately Informative Direct
Biological Process (BP) regulation of nitrogen compound metabolic process 0.0006128 Moderately Informative Direct
Biological Process (BP) regulation of cellular metabolic process 0.03262 Moderately Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.006628 Least Informative Inherited

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTranscription regulation0Moderately InformativeDirect
Biological processWnt signaling pathway6.565e-14InformativeDirect
Cellular componentNucleus0Least InformativeDirect
Molecular functionDNA-binding0Moderately InformativeDirect
Post-translational modificationRepressor0Moderately InformativeDirect
Post-translational modificationPhosphoprotein7.64e-05Least InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR013723 SSF102031 Protein matches
Abstract

AXH is a protein-protein and RNA binding motif found in Ataxin-1 (ATX1)[PubMed14583607]. ATX1 is responsible for the autosomal-dominant neurodegenerative disorder Spinocerebellar ataxia type-1 (SCA1) in humans. The AXH module has also been identified in the apparently unrelated transcription factor HBP1 which is thought to be involved in the architectural regulation of chromatin and in specific gene expression [PubMed12965213].


InterPro database

PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a AXH domain domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the AXH domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.