SUPERFAMILY 1.75 HMM library and genome assignments server


N-terminal, heterodimerisation domain of RBP7 (RpoE) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Dodecin subunit-like [ 88797] (6)
Superfamily:   N-terminal, heterodimerisation domain of RBP7 (RpoE) [ 88798]
Families:   N-terminal, heterodimerisation domain of RBP7 (RpoE) [ 88799]


Superfamily statistics
Genomes (647) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 1,363 0 4
Proteins 1,362 0 4


Functional annotation
General category General
Detailed category Protein interaction

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 1.109e-06 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 1.352e-05 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 1.73e-05 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 3.191e-05 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 3.287e-05 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0009281 Least Informative Direct
Biological Process (BP) heterocycle biosynthetic process 7.281e-15 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 7.281e-15 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 7.281e-15 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 6.33e-14 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 1.779e-13 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 2.201e-13 Moderately Informative Direct
Biological Process (BP) gene expression 7.202e-13 Moderately Informative Direct
Biological Process (BP) transcription, DNA-dependent 0 Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 8.305e-10 Moderately Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct
Molecular Function (MF) RNA polymerase activity 0 Highly Informative Direct
Cellular Component (CC) protein complex 2.705e-11 Least Informative Direct
Cellular Component (CC) intracellular organelle part 1.069e-08 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 4.321e-05 Least Informative Direct
Cellular Component (CC) nuclear part 1.688e-13 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 1.742e-05 Moderately Informative Direct
Cellular Component (CC) nuclear DNA-directed RNA polymerase complex 0 Informative Direct
Cellular Component (CC) nucleoplasm part 4.745e-08 Informative Direct
Cellular Component (CC) DNA-directed RNA polymerase II, core complex 1.814e-06 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)shoot axis0Least InformativeDirect
Plant ANatomical entity (PAN)collective phyllome structure0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)root system0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)whole plant0Least InformativeDirect
Plant ANatomical entity (PAN)leaf0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)cotyledon0Moderately InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)DNA-directed RNA polymerase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentNucleus5.923e-13Least InformativeDirect
Cellular componentDNA-directed RNA polymerase0Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a N-terminal, heterodimerisation domain of RBP7 (RpoE) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the N-terminal, heterodimerisation domain of RBP7 (RpoE) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]