SUPERFAMILY 1.75 HMM library and genome assignments server


Multidrug efflux transporter AcrB transmembrane domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Multidrug efflux transporter AcrB transmembrane domain [ 82865]
Superfamily:   Multidrug efflux transporter AcrB transmembrane domain [ 82866]
Families:   Multidrug efflux transporter AcrB transmembrane domain [ 82867]


Superfamily statistics
Genomes (2,951) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 38,036 0 4
Proteins 21,510 0 2


Functional annotation
General category Processes_IC
Detailed category Transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 9.838e-13 Least Informative Direct
Biological Process (BP) multicellular organismal process 1.391e-06 Least Informative Direct
Biological Process (BP) protein metabolic process 1 Least Informative Inherited
Biological Process (BP) developmental process 0.8417 Least Informative Inherited
Biological Process (BP) response to stimulus 0.1227 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.9761 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.1435 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.2719 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) homeostatic process 1.643e-06 Moderately Informative Direct
Biological Process (BP) monocarboxylic acid metabolic process 6.122e-05 Moderately Informative Direct
Biological Process (BP) gene expression 0.6441 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.482 Moderately Informative Inherited
Biological Process (BP) regulation of signal transduction 0.2366 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.0179 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.1509 Moderately Informative Inherited
Biological Process (BP) organic substance transport 0.8317 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.3942 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.03665 Moderately Informative Inherited
Biological Process (BP) cellular localization 0.008161 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 0.2626 Moderately Informative Inherited
Biological Process (BP) organic hydroxy compound metabolic process 0.001425 Moderately Informative Inherited
Biological Process (BP) single-organism biosynthetic process 0.04935 Moderately Informative Inherited
Biological Process (BP) lipid biosynthetic process 0.01144 Moderately Informative Inherited
Biological Process (BP) transmembrane transport 1.645e-07 Informative Direct
Biological Process (BP) lipid localization 3.91e-06 Informative Direct
Biological Process (BP) negative regulation of cell communication 6.102e-05 Informative Direct
Biological Process (BP) negative regulation of response to stimulus 0.0001365 Informative Direct
Biological Process (BP) alcohol metabolic process 0.0007499 Informative Direct
Biological Process (BP) negative regulation of signaling 0.002944 Informative Inherited
Biological Process (BP) secretion by cell 0.001299 Informative Inherited
Biological Process (BP) protein transport 0.7705 Informative Inherited
Biological Process (BP) organic hydroxy compound biosynthetic process 0.003208 Informative Inherited
Biological Process (BP) response to drug 1.422e-12 Highly Informative Direct
Biological Process (BP) organic hydroxy compound transport 1.297e-06 Highly Informative Direct
Biological Process (BP) steroid biosynthetic process 4.379e-06 Highly Informative Direct
Biological Process (BP) alcohol biosynthetic process 0.001245 Highly Informative Inherited
Biological Process (BP) sterol metabolic process 0.03073 Highly Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transporter activity 9.661e-11 Moderately Informative Direct
Molecular Function (MF) lipid binding 0.002455 Informative Inherited
Molecular Function (MF) steroid binding 1.207e-08 Highly Informative Direct
Molecular Function (MF) alcohol binding 4.596e-08 Highly Informative Direct
Cellular Component (CC) membrane 6.781e-06 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.9555 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.2695 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) endomembrane system 1.891e-11 Moderately Informative Direct
Cellular Component (CC) endoplasmic reticulum 9.168e-09 Moderately Informative Direct
Cellular Component (CC) organelle envelope 7.433e-07 Moderately Informative Direct
Cellular Component (CC) plasma membrane 1.434e-05 Moderately Informative Direct
Cellular Component (CC) intrinsic to membrane 0.01598 Moderately Informative Inherited
Cellular Component (CC) nuclear part 0.1387 Moderately Informative Inherited
Cellular Component (CC) nuclear envelope 1.215e-13 Informative Direct
Cellular Component (CC) integral to membrane 2.933e-10 Informative Direct
Cellular Component (CC) lytic vacuole 7.28e-06 Informative Direct
Cellular Component (CC) perinuclear region of cytoplasm 6.999e-11 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0Moderately InformativeDirect
Enzyme Commission (EC)Hydroxymethylglutaryl-CoA reductase (NADPH)0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)artery disease0.001963Moderately InformativeInherited
Disease Ontology (DO)coronary artery disease3.183e-05InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0Least InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.4275Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.613Least InformativeInherited
Mammalian Phenotype (MP)abnormal lipid homeostasis0.0315Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal brain morphology0.1161Moderately InformativeInherited
Mammalian Phenotype (MP)decreased cholesterol level0.0005329Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)larval development variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.2004Least InformativeInherited
Worm Phenotype (WP)organism environmental stimulus response variant0.3628Least InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0Moderately InformativeDirect
Worm Phenotype (WP)locomotion variant0Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant2.722e-05Moderately InformativeDirect
Worm Phenotype (WP)chemical response variant0.07812Moderately InformativeInherited
Worm Phenotype (WP)early embryonic lethal0.3135Moderately InformativeInherited
Worm Phenotype (WP)body length variant0InformativeDirect
Worm Phenotype (WP)body width variant0InformativeDirect
Worm Phenotype (WP)chemotaxis variant0.004353InformativeInherited
Worm Phenotype (WP)alimentary system morphology variant0Highly InformativeDirect
Worm Phenotype (WP)body vacuole0Highly InformativeDirect
Worm Phenotype (WP)molt variant0Highly InformativeDirect
Worm Phenotype (WP)male tail development variant1.482e-11Highly InformativeDirect
Worm Phenotype (WP)small2.109e-11Highly InformativeDirect
Worm Phenotype (WP)cell secretion variant6.926e-08Highly InformativeDirect
Worm Phenotype (WP)negative chemotaxis variant0.0003851Highly InformativeDirect
Worm Phenotype (WP)osmotic integrity variant0.001349Highly InformativeInherited
Worm Phenotype (WP)alae morphology variant0.0995Highly InformativeInherited

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system0Least InformativeDirect
Fly Anatomy (FA)anterior-posterior subdivision of organism1Least InformativeInherited
Fly Anatomy (FA)head0Moderately InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)digestive system0Least InformativeDirect
Zebrafish Anatomy (ZA)nervous system0Least InformativeDirect
Zebrafish Anatomy (ZA)trunk0Least InformativeDirect
Zebrafish Anatomy (ZA)portion of tissue0Least InformativeDirect
Zebrafish Anatomy (ZA)multi-tissue structure0Least InformativeDirect
Zebrafish Anatomy (ZA)cavitated compound organ0Least InformativeDirect
Zebrafish Anatomy (ZA)cell0Least InformativeDirect
Zebrafish Anatomy (ZA)head0.4821Least InformativeInherited
Zebrafish Anatomy (ZA)anatomical space0Moderately InformativeDirect
Zebrafish Anatomy (ZA)suspensorium8.286e-05Moderately InformativeDirect
Zebrafish Anatomy (ZA)cartilage element0.000344Moderately InformativeDirect
Zebrafish Anatomy (ZA)pharyngeal arch0.01976Moderately InformativeInherited
Zebrafish Anatomy (ZA)surface structure0.0514Moderately InformativeInherited
Zebrafish Anatomy (ZA)cardiovascular system0.1181Moderately InformativeInherited
Zebrafish Anatomy (ZA)eye0.2064Moderately InformativeInherited
Zebrafish Anatomy (ZA)hyosymplectic cartilage2.127e-06InformativeDirect
Zebrafish Anatomy (ZA)heart primordium3.289e-06InformativeDirect
Zebrafish Anatomy (ZA)acellular anatomical structure6.228e-06InformativeDirect
Zebrafish Anatomy (ZA)ventral hyoid arch7.67e-05InformativeDirect
Zebrafish Anatomy (ZA)inner ear0.0003014InformativeDirect
Zebrafish Anatomy (ZA)retinal ganglion cell layer0.000985InformativeDirect

Document: ZA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Acting on the CH-OH group of donors0Moderately InformativeDirect
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processProtein transport0Moderately InformativeDirect
Biological processLipid metabolism0.0005763Moderately InformativeDirect
Biological processSteroid metabolism0InformativeDirect
Biological processAntibiotic resistance7.747e-06InformativeDirect
Biological processLipid biosynthesis1InformativeInherited
Biological processCholesterol metabolism0Highly InformativeDirect
Biological processTranslocation0Highly InformativeDirect
Biological processSteroid biosynthesis3.373e-11Highly InformativeDirect
Biological processSterol biosynthesis1Highly InformativeInherited
Cellular componentMembrane0Least InformativeDirect
Cellular componentCell membrane0Moderately InformativeDirect
Cellular componentEndoplasmic reticulum0.0009903Moderately InformativeDirect
Cellular componentCell inner membrane0InformativeDirect
DomainTransmembrane0Least InformativeDirect
Post-translational modificationGlycoprotein1.057e-09Least InformativeDirect
Post-translational modificationIsopeptide bond0.0009168Moderately InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)cofactor metabolism0.09083Least InformativeInherited
UniPathway (UP)metabolic intermediate biosynthesis3.185e-07Moderately InformativeDirect
UniPathway (UP)porphyrin-containing compound metabolism0.0001122Moderately InformativeDirect
UniPathway (UP)macrocycle metabolism0.0001132Moderately InformativeDirect
UniPathway (UP)(R)-mevalonate metabolism0Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Multidrug efflux transporter AcrB transmembrane domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Multidrug efflux transporter AcrB transmembrane domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]