SUPERFAMILY 1.75 HMM library and genome assignments server


DPP6 N-terminal domain-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   8-bladed beta-propeller [ 50997] (3)
Superfamily:   DPP6 N-terminal domain-like [ 82171]
Families:   DPP6 N-terminal domain-like [ 82172] (2)


Superfamily statistics
Genomes (1,975) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 11,133 16,973 18
Proteins 10,805 16,522 18


Functional annotation
General category Processes_IC
Detailed category Proteases

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 0.8785 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.06986 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) localization 0.9444 Least Informative Inherited
Biological Process (BP) regulation of protein metabolic process 0.0001931 Moderately Informative Direct
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) immune system process 0.6114 Moderately Informative Inherited
Biological Process (BP) system process 0.5207 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.1147 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 0.1088 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.08999 Moderately Informative Inherited
Biological Process (BP) regulation of macromolecule biosynthetic process 0.03455 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 0.05753 Moderately Informative Inherited
Biological Process (BP) gene expression 0.0156 Moderately Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 0.1945 Moderately Informative Inherited
Biological Process (BP) posttranscriptional regulation of gene expression 2.454e-07 Informative Direct
Biological Process (BP) translation 3.511e-05 Informative Direct
Biological Process (BP) negative regulation of cellular component organization 0.0003832 Informative Direct
Biological Process (BP) positive regulation of immune system process 0.01865 Informative Inherited
Biological Process (BP) cell projection organization 0.1573 Informative Inherited
Biological Process (BP) regulation of ion transport 0.003267 Informative Inherited
Biological Process (BP) transmission of nerve impulse 0.118 Informative Inherited
Biological Process (BP) localization of cell 0.01405 Informative Inherited
Biological Process (BP) cellular component movement 0.02432 Informative Inherited
Biological Process (BP) locomotion 0.04732 Informative Inherited
Biological Process (BP) regulation of translation 6.32e-11 Highly Informative Direct
Biological Process (BP) translational initiation 3.671e-08 Highly Informative Direct
Biological Process (BP) positive regulation of cell activation 0.0001158 Highly Informative Direct
Biological Process (BP) regulation of T cell activation 0.0001266 Highly Informative Direct
Biological Process (BP) regulation of membrane potential 0.002729 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 0.0002656 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 0.005158 Moderately Informative Inherited
Molecular Function (MF) peptidase activity 0 Informative Direct
Molecular Function (MF) RNA binding 2.17e-09 Informative Direct
Molecular Function (MF) protein dimerization activity 0.001928 Informative Inherited
Molecular Function (MF) enzyme binding 0.01865 Informative Inherited
Molecular Function (MF) translation factor activity, nucleic acid binding 0 Highly Informative Direct
Molecular Function (MF) exopeptidase activity 1.555e-15 Highly Informative Direct
Molecular Function (MF) protein homodimerization activity 0.0008527 Highly Informative Direct
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) protein complex 0.04112 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.1546 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cell projection 9.49e-05 Moderately Informative Direct
Cellular Component (CC) plasma membrane part 0.2376 Moderately Informative Inherited
Cellular Component (CC) vesicle 0.3573 Moderately Informative Inherited
Cellular Component (CC) cell leading edge 7.946e-06 Informative Direct
Cellular Component (CC) cell projection membrane 0.0001522 Highly Informative Direct
Cellular Component (CC) endocytic vesicle 0.000224 Highly Informative Direct
Cellular Component (CC) cilium 0.0005052 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Least InformativeDirect
Enzyme Commission (EC)Dipeptidyl-peptidases and tripeptidyl-peptidases0InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.5059Least InformativeInherited
Disease Ontology (DO)nervous system cancer0.001679Moderately InformativeInherited
Disease Ontology (DO)hematologic cancer0.1642Moderately InformativeInherited
Disease Ontology (DO)meningioma4.473e-07InformativeDirect
Disease Ontology (DO)chronic leukemia0.00411InformativeInherited
Disease Ontology (DO)lymphoblastic leukemia0.007419InformativeInherited
Disease Ontology (DO)chronic lymphocytic leukemia0.0006343Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details) Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)pericellular component development variant3.345e-06Moderately InformativeDirect
Worm Phenotype (WP)basement membrane remodeling variant1.136e-06InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)viable0Least InformativeDirect

Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Moderately InformativeDirect
Enzyme Commission (EC)Dipeptidyl-peptidases and tripeptidyl-peptidases0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processVirulence6.539e-14InformativeDirect
Biological processProtein biosynthesis4.853e-13InformativeDirect
Biological processCell adhesion3.216e-08InformativeDirect
Biological processTranslation regulation4.784e-05InformativeDirect
Biological processCilium biogenesis/degradation9.843e-09Highly InformativeDirect
Cellular componentMembrane3.074e-10Least InformativeDirect
Cellular componentCell projection8.488e-13Moderately InformativeDirect
Cellular componentSecreted4.887e-09Moderately InformativeDirect
Cellular componentCell junction9.514e-07Moderately InformativeDirect
Cellular componentVacuole0InformativeDirect
DomainTransmembrane0.04496Least InformativeInherited
DomainSignal-anchor0InformativeDirect
DomainWD repeat0InformativeDirect
Molecular functionRNA-binding0.0001718Moderately InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationProtease0Moderately InformativeDirect
Post-translational modificationInitiation factor0InformativeDirect
Post-translational modificationSerine protease0InformativeDirect
Post-translational modificationAminopeptidase0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a DPP6 N-terminal domain-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the DPP6 N-terminal domain-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]