SUPERFAMILY 1.75 HMM library and genome assignments server


Double Clp-N motif superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Double Clp-N motif [ 81922]
Superfamily:   Double Clp-N motif [ 81923]
Families:   Double Clp-N motif [ 81924] (2)


Superfamily statistics
Genomes (2,776) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 7,268 17,702 6
Proteins 7,180 17,472 6


Functional annotation
General category Processes_IC
Detailed category Protein modification

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) heterocycle metabolic process 0.03423 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.2432 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.038 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.245 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.19 Least Informative Inherited
Biological Process (BP) response to stimulus 0.1176 Least Informative Inherited
Biological Process (BP) organonitrogen compound catabolic process 1.327e-06 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 2.022e-06 Moderately Informative Direct
Biological Process (BP) organic cyclic compound catabolic process 2.419e-06 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 4.355e-05 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 0.0004711 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0.0007974 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.001146 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.01097 Moderately Informative Inherited
Biological Process (BP) nucleoside monophosphate metabolic process 3.787e-08 Informative Direct
Biological Process (BP) nucleoside triphosphate metabolic process 2.592e-07 Informative Direct
Biological Process (BP) purine ribonucleoside metabolic process 5.631e-07 Informative Direct
Biological Process (BP) purine ribonucleotide metabolic process 9.14e-07 Informative Direct
Biological Process (BP) organophosphate catabolic process 6.473e-06 Informative Direct
Biological Process (BP) carbohydrate derivative catabolic process 1.308e-05 Informative Direct
Biological Process (BP) glycosyl compound catabolic process 1.372e-05 Informative Direct
Biological Process (BP) nucleobase-containing compound catabolic process 2.01e-05 Informative Direct
Biological Process (BP) response to heat 3.859e-10 Highly Informative Direct
Biological Process (BP) nucleoside monophosphate catabolic process 8.896e-09 Highly Informative Direct
Biological Process (BP) ATP metabolic process 1.246e-08 Highly Informative Direct
Biological Process (BP) purine ribonucleoside triphosphate catabolic process 1.035e-07 Highly Informative Direct
Biological Process (BP) purine ribonucleoside catabolic process 1.464e-07 Highly Informative Direct
Biological Process (BP) purine ribonucleotide catabolic process 1.639e-07 Highly Informative Direct
Molecular Function (MF) hydrolase activity 0.0001031 Least Informative Direct
Molecular Function (MF) nucleoside-triphosphatase activity 8.278e-06 Informative Direct
Cellular Component (CC) cytoplasmic part 0.0001094 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.1083 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.0146 Least Informative Inherited
Cellular Component (CC) organelle envelope 1.474e-07 Moderately Informative Direct
Cellular Component (CC) plastid 0 Informative Direct
Cellular Component (CC) chloroplast stroma 5.839e-15 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processStress response0InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Cellular componentPlastid7.868e-06Moderately InformativeDirect
Cellular componentChloroplast1.087e-08InformativeDirect
DomainRepeat0Least InformativeDirect
DomainCoiled coil0Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationChaperone0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Double Clp-N motif domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Double Clp-N motif superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]