SUPERFAMILY 1.75 HMM library and genome assignments server

Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81532]
Superfamily:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81531]
Families:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81530]


Superfamily statistics
Genomes (448) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 640 713 6
Proteins 640 712 6


Functional annotation
General category Metabolism
Detailed category Energy

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)single-organism metabolic process0.026550.005611Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.007880.05694Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.0045380.01506Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.0030610.04086Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process0.0031280.04481Least InformativeInherited
Biological Process (BP)single-organism cellular process0.10660.09399Least InformativeInherited
Biological Process (BP)organophosphate metabolic process0.00014910.00002641Moderately InformativeDirect
Biological Process (BP)nucleobase-containing small molecule metabolic process0.000075040.000006548Moderately InformativeDirect
Biological Process (BP)oxidation-reduction process0.000014660.000000002034Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process0.00018060.00003811Moderately InformativeDirect
Biological Process (BP)phosphate-containing compound metabolic process0.0010170.0001814Moderately InformativeInherited
Biological Process (BP)nucleoside monophosphate metabolic process0.00000030220.00000000758InformativeDirect
Biological Process (BP)nucleoside triphosphate metabolic process0.0000040210.00000003248InformativeDirect
Biological Process (BP)purine ribonucleotide metabolic process0.0000058030.00000008048InformativeDirect
Biological Process (BP)energy derivation by oxidation of organic compounds0.00000032730.00000000001467InformativeDirect
Biological Process (BP)phosphorylation0.000016660.000002229InformativeDirect
Biological Process (BP)purine ribonucleoside metabolic process0.0000073820.00000005802InformativeDirect
Biological Process (BP)oxidative phosphorylation0.0000000010440.00000002215Highly InformativeDirect
Biological Process (BP)electron transport chain0.0000000048890.000000000009494Highly InformativeDirect
Cellular Component (CC)membrane0.0000016690.0000238Least InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle0.00002830.00009201Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.000031130.00001248Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.00000033260.000569Least InformativeDirect
Cellular Component (CC)organelle envelope0.000000000014750.0000000002179Moderately InformativeDirect
Cellular Component (CC)mitochondrial part0.0000000000072960.00000000009113Moderately InformativeDirect
Cellular Component (CC)respiratory chain0.00000046080.00000000002231InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0.0004507 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.005611 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.09399 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.05694 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.01506 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.04086 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.04481 Least Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.0001814 Moderately Informative Direct
Biological Process (BP) ion transport 0.000001824 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0.00002641 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 0.000006548 Moderately Informative Direct
Biological Process (BP) oxidation-reduction process 0.000000002034 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.00003811 Moderately Informative Direct
Biological Process (BP) nucleoside monophosphate metabolic process 0.00000000758 Informative Direct
Biological Process (BP) nucleoside triphosphate metabolic process 0.00000003248 Informative Direct
Biological Process (BP) purine ribonucleotide metabolic process 0.00000008048 Informative Direct
Biological Process (BP) monovalent inorganic cation transport 0.000000001362 Informative Direct
Biological Process (BP) energy derivation by oxidation of organic compounds 0.00000000001467 Informative Direct
Biological Process (BP) phosphorylation 0.000002229 Informative Direct
Biological Process (BP) ion transmembrane transport 0.00000002142 Informative Direct
Biological Process (BP) purine ribonucleoside metabolic process 0.00000005802 Informative Direct
Biological Process (BP) oxidative phosphorylation 0.00000002215 Highly Informative Direct
Biological Process (BP) electron transport chain 0.000000000009494 Highly Informative Direct
Biological Process (BP) hydrogen ion transmembrane transport 0.000000000004082 Highly Informative Direct
Molecular Function (MF) transporter activity 0.00000174 Moderately Informative Direct
Molecular Function (MF) oxidoreductase activity 0.000002707 Moderately Informative Direct
Molecular Function (MF) monovalent inorganic cation transmembrane transporter activity 0.0000000005156 Informative Direct
Molecular Function (MF) hydrogen ion transmembrane transporter activity 0.000000000003661 Highly Informative Direct
Cellular Component (CC) membrane 0.0000238 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.00009201 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.00001248 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.000569 Least Informative Direct
Cellular Component (CC) organelle envelope 0.0000000002179 Moderately Informative Direct
Cellular Component (CC) mitochondrial part 0.00000000009113 Moderately Informative Direct
Cellular Component (CC) mitochondrial membrane part 0.0000007517 Informative Direct
Cellular Component (CC) respiratory chain 0.00000000002231 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processElectron transport0InformativeDirect
Biological processRespiratory chain0Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentMitochondrion0Moderately InformativeDirect
Cellular componentMitochondrion inner membrane0InformativeDirect
DomainTransit peptide0.000000007999Moderately InformativeDirect
Post-translational modificationDisulfide bond0.0000000001772Least InformativeDirect
Post-translational modificationAcetylation0.0009942Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]