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Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81532]
Superfamily:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81531]
Families:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81530]


Superfamily statistics
Genomes (447) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 638 713 6
Proteins 638 712 6


Functional annotation
General category Metabolism
Detailed category Energy

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)single-organism metabolic process0.013250.005181Least InformativeInherited
Biological Process (BP)phosphate-containing compound metabolic process0.00086990.0001383Moderately InformativeDirect
Biological Process (BP)phosphorylation0.0000089820.000001096InformativeDirect
Biological Process (BP)energy derivation by oxidation of organic compounds0.00000033350.001173InformativeInherited
Biological Process (BP)oxidative phosphorylation0.000000001050.0000001001Highly InformativeDirect
Biological Process (BP)electron transport chain0.0000000049070.00005478Highly InformativeDirect
Cellular Component (CC)membrane0.0000016630.00002375Least InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle0.000033630.0001191Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.000032460.00001226Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.00000033640.0006262Least InformativeDirect
Cellular Component (CC)organelle membrane0.00000000026690.00000000316Moderately InformativeDirect
Cellular Component (CC)organelle envelope0.000000000015030.0000000002021Moderately InformativeDirect
Cellular Component (CC)mitochondrial part0.0000000000075030.00000000008239Moderately InformativeDirect
Cellular Component (CC)respiratory chain0.00000046370.00000000002268InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism metabolic process 0.005181 Least Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.0001383 Moderately Informative Direct
Biological Process (BP) phosphorylation 0.000001096 Informative Direct
Biological Process (BP) energy derivation by oxidation of organic compounds 0.001173 Informative Inherited
Biological Process (BP) oxidative phosphorylation 0.0000001001 Highly Informative Direct
Biological Process (BP) electron transport chain 0.00005478 Highly Informative Direct
Molecular Function (MF) transporter activity 0.000001706 Moderately Informative Direct
Molecular Function (MF) oxidoreductase activity 0.00000267 Moderately Informative Direct
Molecular Function (MF) inorganic cation transmembrane transporter activity 0.000000007276 Informative Direct
Molecular Function (MF) hydrogen ion transmembrane transporter activity 0.000000000003621 Highly Informative Direct
Cellular Component (CC) membrane 0.00002375 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.0001191 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.00001226 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0006262 Least Informative Direct
Cellular Component (CC) organelle membrane 0.00000000316 Moderately Informative Direct
Cellular Component (CC) organelle envelope 0.0000000002021 Moderately Informative Direct
Cellular Component (CC) mitochondrial part 0.00000000008239 Moderately Informative Direct
Cellular Component (CC) mitochondrial membrane part 0.0000008189 Informative Direct
Cellular Component (CC) respiratory chain 0.00000000002268 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processElectron transport0InformativeDirect
Biological processRespiratory chain0Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentMitochondrion0Moderately InformativeDirect
Cellular componentMitochondrion inner membrane0InformativeDirect
DomainTransit peptide0.000000007999Moderately InformativeDirect
Post-translational modificationDisulfide bond0.0000000001772Least InformativeDirect
Post-translational modificationAcetylation0.0009942Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]