SUPERFAMILY 1.75 HMM library and genome assignments server


Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81532]
Superfamily:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81531]
Families:   Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [ 81530]


Superfamily statistics
Genomes (400) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 579 508 6
Proteins 579 507 6


Functional annotation
General category Metabolism
Detailed category Energy

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Cellular Component (CC)membrane1.022e-061.389e-05Least InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle2.461e-058.303e-05Least InformativeDirect
Cellular Component (CC)cytoplasmic part2.856e-051.046e-05Least InformativeDirect
Cellular Component (CC)intracellular organelle part2.203e-070.0004883Least InformativeDirect
Cellular Component (CC)organelle membrane2.509e-104.038e-09Moderately InformativeDirect
Cellular Component (CC)organelle envelope1.448e-112.492e-10Moderately InformativeDirect
Cellular Component (CC)mitochondrial part8.23e-121.348e-10Moderately InformativeDirect
Cellular Component (CC)respiratory chain4.539e-072.517e-11InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism metabolic process 0.01155 Least Informative Inherited
Biological Process (BP) energy derivation by oxidation of organic compounds 0.003211 Informative Inherited
Cellular Component (CC) membrane 1.389e-05 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 8.303e-05 Least Informative Direct
Cellular Component (CC) cytoplasmic part 1.046e-05 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0004883 Least Informative Direct
Cellular Component (CC) organelle membrane 4.038e-09 Moderately Informative Direct
Cellular Component (CC) organelle envelope 2.492e-10 Moderately Informative Direct
Cellular Component (CC) mitochondrial part 1.348e-10 Moderately Informative Direct
Cellular Component (CC) mitochondrial membrane part 7.967e-07 Informative Direct
Cellular Component (CC) respiratory chain 2.517e-11 Informative Direct
Cellular Component (CC) mitochondrial respiratory chain 0.0002931 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processElectron transport0InformativeDirect
Biological processRespiratory chain0Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentMitochondrion0Moderately InformativeDirect
Cellular componentMitochondrion inner membrane0InformativeDirect
DomainTransit peptide7.641e-09Moderately InformativeDirect
Post-translational modificationDisulfide bond1.719e-10Least InformativeDirect
Post-translational modificationAcetylation0.0009799Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]