SUPERFAMILY 1.75 HMM library and genome assignments server


Cell wall binding repeat superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   beta-hairpin stack [ 69359]
Superfamily:   Cell wall binding repeat [ 69360]
Families:   Cell wall binding repeat [ 69361] (3)


Superfamily statistics
Genomes (304) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 2,229 0 9
Proteins 1,465 0 9


Functional annotation
General category Metabolism
Detailed category Coenzyme metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Glycosyltransferases2.379e-07Moderately InformativeDirect

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0.002807Least InformativeInherited
Enzyme Commission (EC)Glycosyltransferases3.093e-07Moderately InformativeDirect
Enzyme Commission (EC)Glycosylases0.0002939Moderately InformativeDirect
Enzyme Commission (EC)Acting on carbon-nitrogen bonds, other than peptide bonds0.03527Moderately InformativeInherited
Enzyme Commission (EC)Hexosyltransferases3.481e-10InformativeDirect
Enzyme Commission (EC)In linear amides4.853e-05InformativeDirect
Enzyme Commission (EC)N-acetylmuramoyl-L-alanine amidase3.031e-11Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell wall biogenesis/degradation1.137e-07InformativeDirect
Cellular componentSecreted2.393e-10Moderately InformativeDirect
DiseaseDental caries0Highly InformativeDirect
DomainRepeat0Least InformativeDirect
Post-translational modificationTransferase0.08282Least InformativeInherited
Post-translational modificationGlycosyltransferase8.973e-09InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Cell wall binding repeat domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Cell wall binding repeat superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]