SUPERFAMILY 1.75 HMM library and genome assignments server


OMPA-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Transmembrane beta-barrels [ 56924] (6)
Superfamily:   OMPA-like [ 56925] (4)
Families:   Outer membrane protein [ 56926] (3)
  Outer membrane enzyme PagP [ 82874]
  GNA1870 immunodominant domain-like [ 144097]
  PsbO-like [ 161115]


Superfamily statistics
Genomes (1,419) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 8,462 33,638 9
Proteins 8,335 33,050 9


Functional annotation
General category Processes_IC
Detailed category Transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.0056260.5087Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.01180.6448Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process1.782e-093.207e-05Moderately InformativeDirect
Biological Process (BP)lipid biosynthetic process7.623e-087.936e-06Moderately InformativeDirect
Biological Process (BP)organophosphate metabolic process9.978e-090.0001783Moderately InformativeDirect
Biological Process (BP)cellular lipid metabolic process1.896e-093.622e-05Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process1.854e-080.0002657Moderately InformativeDirect
Biological Process (BP)phosphate-containing compound metabolic process5.456e-060.05644Moderately InformativeInherited
Biological Process (BP)membrane lipid metabolic process07.333e-15InformativeDirect
Biological Process (BP)phospholipid metabolic process08.474e-11InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process6.985e-118.588e-09InformativeDirect
Biological Process (BP)glycolipid biosynthetic process1.96e-097.588e-11Highly InformativeDirect
Biological Process (BP)oligosaccharide metabolic process01.335e-11Highly InformativeDirect
Molecular Function (MF)transferase activity, transferring acyl groups3.229e-133.49e-09InformativeDirect
Molecular Function (MF)O-acyltransferase activity1.126e-083.717e-08Highly InformativeDirect
Cellular Component (CC)membrane2.577e-060Least InformativeDirect
Cellular Component (CC)external encapsulating structure00InformativeDirect
Cellular Component (CC)cell envelope00Highly InformativeDirect
Cellular Component (CC)external encapsulating structure part00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.5087 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.6448 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 3.207e-05 Moderately Informative Direct
Biological Process (BP) lipid biosynthetic process 7.936e-06 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0.0001783 Moderately Informative Direct
Biological Process (BP) cellular lipid metabolic process 3.622e-05 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.0002657 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.05644 Moderately Informative Inherited
Biological Process (BP) membrane lipid metabolic process 7.333e-15 Informative Direct
Biological Process (BP) phospholipid metabolic process 8.474e-11 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 8.588e-09 Informative Direct
Biological Process (BP) glycolipid biosynthetic process 7.588e-11 Highly Informative Direct
Biological Process (BP) oligosaccharide metabolic process 1.335e-11 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring acyl groups 3.49e-09 Informative Direct
Molecular Function (MF) O-acyltransferase activity 3.717e-08 Highly Informative Direct
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) external encapsulating structure 0 Informative Direct
Cellular Component (CC) cell envelope 0 Highly Informative Direct
Cellular Component (CC) external encapsulating structure part 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0.002047Least InformativeInherited
Biological processIon transport9.339e-16Moderately InformativeDirect
Biological processPhotosynthesis1.023e-14InformativeDirect
Biological processVirulence3.796e-10InformativeDirect
Biological processConjugation0Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentPlastid0.004768Moderately InformativeInherited
Cellular componentCell outer membrane0InformativeDirect
Cellular componentThylakoid4.964e-08InformativeDirect
Cellular componentChloroplast5.833e-05InformativeDirect
Cellular componentPhotosystem II0Highly InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane0.001893Least InformativeInherited
DomainTransmembrane beta strand0Highly InformativeDirect
Molecular functionManganese1.175e-09Moderately InformativeDirect
Post-translational modificationTransferase0.002475Least InformativeInherited
Post-translational modificationAcyltransferase0InformativeDirect
Post-translational modificationPalmitate0.0009658Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a OMPA-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the OMPA-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]