SUPERFAMILY 1.75 HMM library and genome assignments server

OMPA-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Transmembrane beta-barrels [ 56924] (6)
Superfamily:   OMPA-like [ 56925] (4)
Families:   Outer membrane protein [ 56926] (3)
  Outer membrane enzyme PagP [ 82874]
  GNA1870 immunodominant domain-like [ 144097]
  PsbO-like [ 161115]


Superfamily statistics
Genomes (1,438) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 8,454 62,547 9
Proteins 8,323 61,693 9


Functional annotation
General category Processes_IC
Detailed category Transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)single-organism metabolic process0.060351Least InformativeInherited
Biological Process (BP)biosynthetic process0.0060680.5172Least InformativeInherited
Biological Process (BP)single-organism cellular process0.44761Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process0.0000000018740.00003145Moderately InformativeDirect
Biological Process (BP)lipid metabolic process0.000000017840.0003351Moderately InformativeDirect
Biological Process (BP)organophosphate metabolic process0.000000021160.0002544Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process0.000000039790.000395Moderately InformativeDirect
Biological Process (BP)phosphate-containing compound metabolic process0.0000095850.04234Moderately InformativeInherited
Biological Process (BP)membrane lipid metabolic process00.000000000000007248InformativeDirect
Biological Process (BP)phospholipid metabolic process00.00000000006555InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process0.000000000040910.000000007494InformativeDirect
Biological Process (BP)liposaccharide metabolic process00InformativeDirect
Biological Process (BP)glycolipid biosynthetic process0.0000000031070.0000000001009Highly InformativeDirect
Biological Process (BP)oligosaccharide metabolic process00.000000000001283Highly InformativeDirect
Molecular Function (MF)transferase activity0.0011210.4669Least InformativeInherited
Molecular Function (MF)transferase activity, transferring acyl groups0.00000000000041370.000000004227InformativeDirect
Molecular Function (MF)O-acyltransferase activity0.000000006390.00000001763Highly InformativeDirect
Cellular Component (CC)membrane0.0000072160Least InformativeDirect
Cellular Component (CC)external encapsulating structure00InformativeDirect
Cellular Component (CC)cell envelope00Highly InformativeDirect
Cellular Component (CC)external encapsulating structure part00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.5172 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0.00003145 Moderately Informative Direct
Biological Process (BP) lipid metabolic process 0.0003351 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0.0002544 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.000395 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.04234 Moderately Informative Inherited
Biological Process (BP) membrane lipid metabolic process 0.000000000000007248 Informative Direct
Biological Process (BP) phospholipid metabolic process 0.00000000006555 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0.000000007494 Informative Direct
Biological Process (BP) liposaccharide metabolic process 0 Informative Direct
Biological Process (BP) glycolipid biosynthetic process 0.0000000001009 Highly Informative Direct
Biological Process (BP) oligosaccharide metabolic process 0.000000000001283 Highly Informative Direct
Molecular Function (MF) transferase activity 0.4669 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring acyl groups 0.000000004227 Informative Direct
Molecular Function (MF) O-acyltransferase activity 0.00000001763 Highly Informative Direct
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) external encapsulating structure 0 Informative Direct
Cellular Component (CC) cell envelope 0 Highly Informative Direct
Cellular Component (CC) external encapsulating structure part 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0.002057Least InformativeInherited
Biological processIon transport9.345e-16Moderately InformativeDirect
Biological processPhotosynthesis0.000000000000009131InformativeDirect
Biological processVirulence0.0000000004942InformativeDirect
Biological processConjugation0Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentPlastid0.004777Moderately InformativeInherited
Cellular componentCell outer membrane0InformativeDirect
Cellular componentThylakoid0.0000000443InformativeDirect
Cellular componentChloroplast0.00006044InformativeDirect
Cellular componentPhotosystem II0Highly InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane0.0017Least InformativeInherited
DomainTransmembrane beta strand0InformativeDirect
Molecular functionManganese0.000000001411Moderately InformativeDirect
Post-translational modificationTransferase0.00238Least InformativeInherited
Post-translational modificationAcyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a OMPA-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the OMPA-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]