SUPERFAMILY 1.75 HMM library and genome assignments server

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HAD-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   HAD-like [ 56783]
Superfamily:   HAD-like [ 56784] (25)
Families:   Probable phosphatase YrbI [ 69467]
  HAD-related [ 56785] (2)
  beta-Phosphoglucomutase-like [ 75173] (9)
  YihX-like [ 56789] (2)
  Phosphonoacetaldehyde hydrolase-like [ 56792] (2)
  Phosphoserine phosphatase [ 64511]
  5'(3')-deoxyribonucleotidase (dNT-2) [ 82382]
  Homoserine kinase ThrH [ 102304]
  Class B acid phosphatase, AphA [ 102307]
  Hypothetical protein MW1667 (SA1546) [ 102310]
  phosphatase domain of polynucleotide kinase [ 82385] (2)
  Predicted hydrolases Cof [ 82388] (11)
  NagD-like [ 102317] (6)
  Meta-cation ATPase, catalytic domain P [ 81656] (2)
  Trehalose-phosphatase [ 110506]
  NLI interacting factor-like phosphatase [ 110509]
  Magnesium-dependent phosphatase-1, Mdp1 [ 117509]
  Hypothetical protein VC0232 [ 117512]
  Histidinol phosphatase-like [ 142177] (3)
  MtnX-like [ 142180]
  Pyrimidine 5'-nucleotidase (UMPH-1) [ 142183]
  Enolase-phosphatase E1 [ 142186] (2)
  5' nucleotidase-like [ 142191]
  AF1437-like [ 159537]
  BT0820-like [ 159540]


Superfamily statistics
Genomes (3,233) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 90,353 405,420 77
Proteins 89,822 404,734 77


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)regulation of metabolic process11Least InformativeInherited
Biological Process (BP)regulation of cellular process11Least InformativeInherited
Biological Process (BP)single-organism cellular process11Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process11Least InformativeInherited
Biological Process (BP)heterocycle metabolic process11Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process11Least InformativeInherited
Biological Process (BP)biosynthetic process11Least InformativeInherited
Biological Process (BP)cellular macromolecule metabolic process11Least InformativeInherited
Biological Process (BP)cellular component organization or biogenesis11Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process11Least InformativeInherited
Biological Process (BP)single-organism metabolic process11Least InformativeInherited
Biological Process (BP)protein metabolic process0.70821Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process0.000037720.0002847Moderately InformativeDirect
Biological Process (BP)negative regulation of cellular process11Moderately InformativeInherited
Biological Process (BP)positive regulation of metabolic process0.34321Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process0.81331Moderately InformativeInherited
Biological Process (BP)cellular catabolic process11Moderately InformativeInherited
Biological Process (BP)cofactor metabolic process11Moderately InformativeInherited
Biological Process (BP)cellular amino acid metabolic process0.10380.2886Moderately InformativeInherited
Biological Process (BP)single-organism biosynthetic process0.0034570.0279Moderately InformativeInherited
Biological Process (BP)organonitrogen compound biosynthetic process0.72230.6201Moderately InformativeInherited
Biological Process (BP)regulation of cellular biosynthetic process0.49441Moderately InformativeInherited
Biological Process (BP)phosphate-containing compound metabolic process0.036210.00127Moderately InformativeInherited
Biological Process (BP)organophosphate metabolic process0.87550.01738Moderately InformativeInherited
Biological Process (BP)nucleobase-containing small molecule metabolic process0.12010.0006839Moderately InformativeInherited
Biological Process (BP)organic cyclic compound catabolic process0.67790.04674Moderately InformativeInherited
Biological Process (BP)carbohydrate derivative metabolic process0.018480.000003298Moderately InformativeInherited
Biological Process (BP)cellular lipid metabolic process10.841Moderately InformativeInherited
Biological Process (BP)lipid biosynthetic process0.062160.04867Moderately InformativeInherited
Biological Process (BP)cellular macromolecule biosynthetic process0.57581Moderately InformativeInherited
Biological Process (BP)organelle organization0.56250.9Moderately InformativeInherited
Biological Process (BP)sulfur compound metabolic process0.75620.9583Moderately InformativeInherited
Biological Process (BP)cellular protein modification process0.00078420.3824Moderately InformativeInherited
Biological Process (BP)cellular membrane organization0.000033080InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process0.0000013670.0000000001867InformativeDirect
Biological Process (BP)dephosphorylation00InformativeDirect
Biological Process (BP)regulation of lipid metabolic process0.00000026480.0000004906InformativeDirect
Biological Process (BP)cellular metabolic compound salvage0.00018840.00001227InformativeDirect
Biological Process (BP)regulation of mitotic cell cycle0.00056740.5809InformativeInherited
Biological Process (BP)regulation of cell cycle process0.0017580.8629InformativeInherited
Biological Process (BP)sulfur compound biosynthetic process0.0092980.03154InformativeInherited
Biological Process (BP)alpha-amino acid biosynthetic process0.0088910.01516InformativeInherited
Biological Process (BP)sulfur amino acid metabolic process0.0009130.01067InformativeInherited
Biological Process (BP)positive regulation of cellular biosynthetic process0.0096721InformativeInherited
Biological Process (BP)nucleobase-containing compound catabolic process0.33620.01247InformativeInherited
Biological Process (BP)organophosphate catabolic process0.0011680.000004376InformativeInherited
Biological Process (BP)carbohydrate derivative catabolic process0.25410.0003826InformativeInherited
Biological Process (BP)cellular carbohydrate metabolic process0.0012820.00006695InformativeInherited
Biological Process (BP)polysaccharide metabolic process0.032220.1817InformativeInherited
Biological Process (BP)aspartate family amino acid metabolic process0.0024530.1066InformativeInherited
Biological Process (BP)protein dephosphorylation0.00057270.00000000003201Highly InformativeDirect
Biological Process (BP)nucleus organization0.000000000010270.00000001363Highly InformativeDirect
Biological Process (BP)lipopolysaccharide metabolic process0.0000069120.0001689Highly InformativeDirect
Biological Process (BP)amino acid salvage0.0000000056490.000000003648Highly InformativeDirect
Biological Process (BP)positive regulation of lipid metabolic process0.000000000050190.00001624Highly InformativeDirect
Biological Process (BP)L-methionine biosynthetic process0.000000019660.0000000065Highly InformativeDirect
Biological Process (BP)negative regulation of mitotic cell cycle phase transition0.0022980.1448Highly InformativeInherited
Biological Process (BP)regulation of G1/S transition of mitotic cell cycle0.00017890.004472Highly InformativeInherited
Biological Process (BP)deoxyribonucleotide metabolic process0.0025190.02751Highly InformativeInherited
Biological Process (BP)cellular polysaccharide biosynthetic process0.00095370.004208Highly InformativeInherited
Biological Process (BP)serine family amino acid metabolic process0.001890.0004183Highly InformativeInherited
Molecular Function (MF)hydrolase activity00Least InformativeDirect
Molecular Function (MF)binding0.000012940.7709Least InformativeInherited
Molecular Function (MF)hydrolase activity, acting on ester bonds00Moderately InformativeDirect
Molecular Function (MF)cation binding00Moderately InformativeDirect
Molecular Function (MF)isomerase activity0.056921Moderately InformativeInherited
Molecular Function (MF)hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides0.48480Moderately InformativeInherited
Molecular Function (MF)magnesium ion binding00InformativeDirect
Molecular Function (MF)phosphoric ester hydrolase activity00InformativeDirect
Molecular Function (MF)intramolecular transferase activity0.00000000019720.000001991Highly InformativeDirect
Molecular Function (MF)sugar-phosphatase activity0.911Highly InformativeInherited
Cellular Component (CC)cytoplasmic part10.0000000002391Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle10.03616Least InformativeInherited
Cellular Component (CC)intracellular organelle part10.9869Least InformativeInherited
Cellular Component (CC)membrane10Least InformativeInherited
Cellular Component (CC)protein complex11Least InformativeInherited
Cellular Component (CC)organelle membrane0.52010.0000000002924Moderately InformativeInherited
Cellular Component (CC)organelle envelope0.071290.0009702Moderately InformativeInherited
Cellular Component (CC)nuclear part0.541Moderately InformativeInherited
Cellular Component (CC)endomembrane system0.017030Moderately InformativeInherited
Cellular Component (CC)endoplasmic reticulum0.036220Moderately InformativeInherited
Cellular Component (CC)nuclear envelope0.0000019340.00003188InformativeDirect
Cellular Component (CC)endoplasmic reticulum membrane0.000021530.0000000117InformativeDirect
Cellular Component (CC)protein serine/threonine phosphatase complex0.00000000000055090.00000002179Highly InformativeDirect
Cellular Component (CC)nuclear membrane0.000000000067550.0000002845Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0 Least Informative Direct
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0.0002847 Moderately Informative Direct
Biological Process (BP) ion transport 0 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 0.0006839 Moderately Informative Direct
Biological Process (BP) regulation of biological quality 0 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.000003298 Moderately Informative Direct
Biological Process (BP) cellular localization 0.9973 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.9 Moderately Informative Inherited
Biological Process (BP) signal transduction 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 1 Moderately Informative Inherited
Biological Process (BP) cofactor metabolic process 1 Moderately Informative Inherited
Biological Process (BP) system process 0.8072 Moderately Informative Inherited
Biological Process (BP) cellular lipid metabolic process 0.841 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.01738 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.00127 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 1 Moderately Informative Inherited
Biological Process (BP) organic substance transport 1 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) tissue development 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.8946 Moderately Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 0.2886 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 1 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 0.6201 Moderately Informative Inherited
Biological Process (BP) lipid biosynthetic process 0.04867 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 0.9591 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound catabolic process 0.04674 Moderately Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) reproduction 1 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 0.02242 Moderately Informative Inherited
Biological Process (BP) sulfur compound metabolic process 0.9583 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 0.3824 Moderately Informative Inherited
Biological Process (BP) single-organism biosynthetic process 0.0279 Moderately Informative Inherited
Biological Process (BP) organic hydroxy compound metabolic process 0.1168 Moderately Informative Inherited
Biological Process (BP) mitochondrion organization 0.00008588 Informative Direct
Biological Process (BP) blood circulation 0.0001371 Informative Direct
Biological Process (BP) nucleoside monophosphate metabolic process 0.0006134 Informative Direct
Biological Process (BP) lipid localization 0.00000000000001772 Informative Direct
Biological Process (BP) cellular membrane organization 0 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0.0000000001867 Informative Direct
Biological Process (BP) dephosphorylation 0 Informative Direct
Biological Process (BP) regulation of lipid metabolic process 0.0000004906 Informative Direct
Biological Process (BP) metal ion transport 0.00000000152 Informative Direct
Biological Process (BP) cellular metabolic compound salvage 0.00001227 Informative Direct
Biological Process (BP) regulation of ion transport 0.0000002991 Informative Direct
Biological Process (BP) regulation of system process 0.000000005156 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0.00006695 Informative Direct
Biological Process (BP) organophosphate catabolic process 0.000004376 Informative Direct
Biological Process (BP) cation homeostasis 0.0003312 Informative Direct
Biological Process (BP) cellular chemical homeostasis 0 Informative Direct
Biological Process (BP) transmembrane transport 0 Informative Direct
Biological Process (BP) carbohydrate derivative catabolic process 0.0003826 Informative Direct
Biological Process (BP) positive regulation of cellular component organization 0.5155 Informative Inherited
Biological Process (BP) regulation of mitotic cell cycle 0.5809 Informative Inherited
Biological Process (BP) regulation of cell cycle process 0.8629 Informative Inherited
Biological Process (BP) apoptotic process 0.9519 Informative Inherited
Biological Process (BP) positive regulation of protein modification process 1 Informative Inherited
Biological Process (BP) muscle system process 0.3541 Informative Inherited
Biological Process (BP) sulfur compound biosynthetic process 0.03154 Informative Inherited
Biological Process (BP) alpha-amino acid biosynthetic process 0.01516 Informative Inherited
Biological Process (BP) sulfur amino acid metabolic process 0.01067 Informative Inherited
Biological Process (BP) generation of neurons 1 Informative Inherited
Biological Process (BP) sensory organ development 1 Informative Inherited
Biological Process (BP) cell projection organization 1 Informative Inherited
Biological Process (BP) cellular component morphogenesis 1 Informative Inherited
Biological Process (BP) embryonic organ development 0.677 Informative Inherited
Biological Process (BP) embryonic morphogenesis 1 Informative Inherited
Biological Process (BP) purine ribonucleotide metabolic process 0.8335 Informative Inherited
Biological Process (BP) nucleoside triphosphate metabolic process 0.42 Informative Inherited
Biological Process (BP) purine ribonucleoside metabolic process 0.002334 Informative Inherited
Biological Process (BP) positive regulation of multicellular organismal process 0.05779 Informative Inherited
Biological Process (BP) anion transport 1 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 1 Informative Inherited
Biological Process (BP) cytoskeleton organization 1 Informative Inherited
Biological Process (BP) actin filament-based process 1 Informative Inherited
Biological Process (BP) regulation of organelle organization 1 Informative Inherited
Biological Process (BP) central nervous system development 1 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 1 Informative Inherited
Biological Process (BP) membrane lipid metabolic process 0.6343 Informative Inherited
Biological Process (BP) biological adhesion 1 Informative Inherited
Biological Process (BP) response to nutrient levels 0.4622 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 1 Informative Inherited
Biological Process (BP) response to inorganic substance 0.01114 Informative Inherited
Biological Process (BP) response to other organism 1 Informative Inherited
Biological Process (BP) nucleobase-containing compound catabolic process 0.01247 Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0.1817 Informative Inherited
Biological Process (BP) response to light stimulus 0.2783 Informative Inherited
Biological Process (BP) single organism reproductive process 1 Informative Inherited
Biological Process (BP) single-organism behavior 0.02946 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 1 Informative Inherited
Biological Process (BP) gland development 0.5661 Informative Inherited
Biological Process (BP) regulation of body fluid levels 0.005724 Informative Inherited
Biological Process (BP) aspartate family amino acid metabolic process 0.1066 Informative Inherited
Biological Process (BP) alcohol metabolic process 0.2209 Informative Inherited
Biological Process (BP) organic hydroxy compound biosynthetic process 0.005583 Informative Inherited
Biological Process (BP) epithelium development 1 Informative Inherited
Biological Process (BP) organ morphogenesis 1 Informative Inherited
Biological Process (BP) synaptic transmission 1 Informative Inherited
Biological Process (BP) protein dephosphorylation 0.00000000003201 Highly Informative Direct
Biological Process (BP) regulation of muscle contraction 0 Highly Informative Direct
Biological Process (BP) ER-nucleus signaling pathway 0.0006375 Highly Informative Direct
Biological Process (BP) nucleus organization 0.00000001363 Highly Informative Direct
Biological Process (BP) mitochondrial membrane organization 0.00001438 Highly Informative Direct
Biological Process (BP) lactation 0.0000004154 Highly Informative Direct
Biological Process (BP) locomotory behavior 0.000008078 Highly Informative Direct
Biological Process (BP) lipopolysaccharide metabolic process 0.0001689 Highly Informative Direct
Biological Process (BP) serine family amino acid metabolic process 0.0004183 Highly Informative Direct
Biological Process (BP) oligosaccharide metabolic process 0.000001272 Highly Informative Direct
Biological Process (BP) organophosphate ester transport 0.00000000000001083 Highly Informative Direct
Biological Process (BP) negative regulation of hormone metabolic process 0.000001052 Highly Informative Direct
Biological Process (BP) amino acid salvage 0.000000003648 Highly Informative Direct
Biological Process (BP) positive regulation of lipid metabolic process 0.00001624 Highly Informative Direct
Biological Process (BP) ATP metabolic process 0.0002481 Highly Informative Direct
Biological Process (BP) negative regulation of lipid biosynthetic process 0.00003328 Highly Informative Direct
Biological Process (BP) negative regulation of multicellular organismal process 0.00001835 Highly Informative Direct
Biological Process (BP) L-methionine biosynthetic process 0.0000000065 Highly Informative Direct
Biological Process (BP) negative regulation of mitotic cell cycle phase transition 0.1448 Highly Informative Inherited
Biological Process (BP) regulation of G1/S transition of mitotic cell cycle 0.004472 Highly Informative Inherited
Biological Process (BP) mitochondrial transport 0.5232 Highly Informative Inherited
Biological Process (BP) extrinsic apoptotic signaling pathway 0.0123 Highly Informative Inherited
Biological Process (BP) regulation of steroid biosynthetic process 0.8201 Highly Informative Inherited
Biological Process (BP) epithelial cell development 0.9014 Highly Informative Inherited
Biological Process (BP) epidermal cell differentiation 0.3383 Highly Informative Inherited
Biological Process (BP) cell morphogenesis involved in differentiation 1 Highly Informative Inherited
Biological Process (BP) embryonic organ morphogenesis 0.1274 Highly Informative Inherited
Biological Process (BP) cellular calcium ion homeostasis 0.02457 Highly Informative Inherited
Biological Process (BP) maintenance of location 0.1407 Highly Informative Inherited
Biological Process (BP) sensory perception 0.2536 Highly Informative Inherited
Biological Process (BP) monovalent inorganic cation transport 1 Highly Informative Inherited
Biological Process (BP) calcium ion transport 0.03112 Highly Informative Inherited
Biological Process (BP) positive regulation of organelle organization 0.1486 Highly Informative Inherited
Biological Process (BP) transition metal ion homeostasis 0.9293 Highly Informative Inherited
Biological Process (BP) glycolipid biosynthetic process 0.1048 Highly Informative Inherited
Biological Process (BP) cell adhesion 1 Highly Informative Inherited
Biological Process (BP) cellular response to starvation 0.07833 Highly Informative Inherited
Biological Process (BP) response to toxic substance 0.007972 Highly Informative Inherited
Biological Process (BP) deoxyribonucleotide metabolic process 0.02751 Highly Informative Inherited
Biological Process (BP) cellular polysaccharide biosynthetic process 0.004208 Highly Informative Inherited
Biological Process (BP) learning or memory 0.5666 Highly Informative Inherited
Biological Process (BP) transition metal ion transport 0.2238 Highly Informative Inherited
Biological Process (BP) polyol metabolic process 0.7246 Highly Informative Inherited
Biological Process (BP) alcohol biosynthetic process 0.04111 Highly Informative Inherited
Biological Process (BP) post-embryonic development 0.7196 Highly Informative Inherited
Biological Process (BP) ear development 0.06926 Highly Informative Inherited
Biological Process (BP) regulation of neurotransmitter levels 0.9986 Highly Informative Inherited
Biological Process (BP) neurotransmitter transport 1 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 0 Least Informative Direct
Molecular Function (MF) binding 0.7709 Least Informative Inherited
Molecular Function (MF) transferase activity 1 Least Informative Inherited
Molecular Function (MF) transporter activity 0 Moderately Informative Direct
Molecular Function (MF) hydrolase activity, acting on ester bonds 0 Moderately Informative Direct
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0 Moderately Informative Direct
Molecular Function (MF) cation binding 0 Moderately Informative Direct
Molecular Function (MF) anion binding 1 Moderately Informative Inherited
Molecular Function (MF) isomerase activity 1 Moderately Informative Inherited
Molecular Function (MF) nucleotide binding 0.00001159 Informative Direct
Molecular Function (MF) magnesium ion binding 0 Informative Direct
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0 Informative Direct
Molecular Function (MF) active transmembrane transporter activity 0 Informative Direct
Molecular Function (MF) inorganic cation transmembrane transporter activity 0.0000000001955 Informative Direct
Molecular Function (MF) purine ribonucleoside binding 0.000000004948 Informative Direct
Molecular Function (MF) purine ribonucleoside triphosphate binding 0.000000001174 Informative Direct
Molecular Function (MF) phosphoric ester hydrolase activity 0 Informative Direct
Molecular Function (MF) metal ion transmembrane transporter activity 0 Informative Direct
Molecular Function (MF) enzyme binding 0.4201 Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.1822 Informative Inherited
Molecular Function (MF) transferase activity, transferring glycosyl groups 0.03484 Informative Inherited
Molecular Function (MF) ATP binding 0.00000000000001616 Highly Informative Direct
Molecular Function (MF) UDP-glycosyltransferase activity 0.0001466 Highly Informative Direct
Molecular Function (MF) calcium ion transmembrane transporter activity 0.0004044 Highly Informative Direct
Molecular Function (MF) intramolecular transferase activity 0.000001991 Highly Informative Direct
Molecular Function (MF) ATPase activity, coupled to transmembrane movement of ions 0 Highly Informative Direct
Molecular Function (MF) transition metal ion transmembrane transporter activity 0.0001147 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring hexosyl groups 0.002397 Highly Informative Inherited
Molecular Function (MF) protein domain specific binding 0.1734 Highly Informative Inherited
Molecular Function (MF) hydrogen ion transmembrane transporter activity 0.4329 Highly Informative Inherited
Molecular Function (MF) phosphoprotein phosphatase activity 1 Highly Informative Inherited
Molecular Function (MF) lipid transporter activity 0.001668 Highly Informative Inherited
Molecular Function (MF) sodium ion transmembrane transporter activity 0.06149 Highly Informative Inherited
Molecular Function (MF) sugar-phosphatase activity 1 Highly Informative Inherited
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.0000000002391 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.03616 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.9869 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) protein complex 1 Least Informative Inherited
Cellular Component (CC) endoplasmic reticulum 0 Moderately Informative Direct
Cellular Component (CC) plasma membrane 0.00000000001103 Moderately Informative Direct
Cellular Component (CC) endomembrane system 0 Moderately Informative Direct
Cellular Component (CC) organelle membrane 0.0000000002924 Moderately Informative Direct
Cellular Component (CC) organelle envelope 0.0009702 Moderately Informative Direct
Cellular Component (CC) nuclear part 1 Moderately Informative Inherited
Cellular Component (CC) intrinsic to membrane 0.2309 Moderately Informative Inherited
Cellular Component (CC) mitochondrial part 1 Moderately Informative Inherited
Cellular Component (CC) nuclear envelope 0.00003188 Informative Direct
Cellular Component (CC) endoplasmic reticulum membrane 0.0000000117 Informative Direct
Cellular Component (CC) Golgi apparatus 0.000000000661 Informative Direct
Cellular Component (CC) vacuolar part 0.000139 Informative Direct
Cellular Component (CC) contractile fiber part 0.01042 Informative Inherited
Cellular Component (CC) integral to membrane 0.002992 Informative Inherited
Cellular Component (CC) intrinsic to plasma membrane 1 Informative Inherited
Cellular Component (CC) mitochondrial membrane part 0.1712 Informative Inherited
Cellular Component (CC) trans-Golgi network 0.000000003039 Highly Informative Direct
Cellular Component (CC) protein serine/threonine phosphatase complex 0.00000002179 Highly Informative Direct
Cellular Component (CC) apical plasma membrane 0.0001952 Highly Informative Direct
Cellular Component (CC) sarcoplasmic reticulum 0.0000000002466 Highly Informative Direct
Cellular Component (CC) sarcomere 0.0007332 Highly Informative Direct
Cellular Component (CC) nuclear membrane 0.0000002845 Highly Informative Direct
Cellular Component (CC) sarcolemma 0.00008656 Highly Informative Direct
Cellular Component (CC) integral to plasma membrane 1 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on acid anhydrides0Least InformativeDirect
Enzyme Commission (EC)Acting on ester bonds0Least InformativeDirect
Enzyme Commission (EC)Isomerases1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases1Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases0Moderately InformativeDirect
Enzyme Commission (EC)Hydro-lyases0.0001661Moderately InformativeDirect
Enzyme Commission (EC)In phosphorous-containing anhydrides1Moderately InformativeInherited
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep1Moderately InformativeInherited
Enzyme Commission (EC)Glycosyltransferases1Moderately InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides; catalyzing transmembran0InformativeDirect
Enzyme Commission (EC)Phosphotransferases (phosphomutases)0.00005104InformativeDirect
Enzyme Commission (EC)Potassium-transporting ATPase0Highly InformativeDirect
Enzyme Commission (EC)Proton-exporting ATPase0Highly InformativeDirect
Enzyme Commission (EC)Phospholipid-translocating ATPase0Highly InformativeDirect
Enzyme Commission (EC)Sodium/potassium-exchanging ATPase0Highly InformativeDirect
Enzyme Commission (EC)Inorganic diphosphatase0Highly InformativeDirect
Enzyme Commission (EC)Calcium-transporting ATPase0Highly InformativeDirect
Enzyme Commission (EC)Copper-exporting ATPase0Highly InformativeDirect
Enzyme Commission (EC)Histidinol-phosphatase0Highly InformativeDirect
Enzyme Commission (EC)Cu(+) exporting ATPase0.0000000000001039Highly InformativeDirect
Enzyme Commission (EC)Cadmium-exporting ATPase0.000000000006865Highly InformativeDirect
Enzyme Commission (EC)Hydrogen/potassium-exchanging ATPase0.0000000004443Highly InformativeDirect
Enzyme Commission (EC)Zinc-exporting ATPase0.000000007143Highly InformativeDirect

Document: EC annotation of SCOP domains

Worm Phenotype (WP)

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WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.002368Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.08705Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.1511Least InformativeInherited
Worm Phenotype (WP)chemical response variant0.1597Moderately InformativeInherited
Worm Phenotype (WP)nicotine response variant0.02052InformativeInherited
Worm Phenotype (WP)lipid metabolism variant0.08308InformativeInherited
Worm Phenotype (WP)cell membrane morphology variant0.00000001197Highly InformativeDirect
Worm Phenotype (WP)nicotine hypersensitive0.000001923Highly InformativeDirect
Worm Phenotype (WP)lipid composition variant0.00003424Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

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AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)sporangium0.00000009694Least InformativeDirect
Plant ANatomical entity (PAN)whole plant0.002097Least InformativeInherited
Plant ANatomical entity (PAN)portion of meristem tissue0.02505Least InformativeInherited
Plant ANatomical entity (PAN)microsporophyll0.1446Least InformativeInherited
Plant ANatomical entity (PAN)shoot axis0.1922Least InformativeInherited
Plant ANatomical entity (PAN)gamete0.00001662InformativeDirect
Plant ANatomical entity (PAN)pollen tube cell0.0004188InformativeDirect
Plant ANatomical entity (PAN)primordium0.002516InformativeInherited
Plant ANatomical entity (PAN)portion of ground tissue0.006588InformativeInherited
Plant ANatomical entity (PAN)parenchyma cell0.000002926Highly InformativeDirect
Plant ANatomical entity (PAN)vegetative shoot apex0.00002743Highly InformativeDirect
Plant ANatomical entity (PAN)phyllome primordium0.00003442Highly InformativeDirect
Plant ANatomical entity (PAN)mesophyll1Highly InformativeInherited
Plant structure DEvelopment stage (PDE)pollen development stage0.0000799Moderately InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

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EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0.000000000000007554Moderately InformativeDirect
Enzyme Commission (EC)Carbon-oxygen lyases0.1985Moderately InformativeInherited
Enzyme Commission (EC)Glycosyltransferases1Moderately InformativeInherited
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor1Moderately InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases1Moderately InformativeInherited
Enzyme Commission (EC)Isomerases1Moderately InformativeInherited
Enzyme Commission (EC)Hexosyltransferases0.0334InformativeInherited
Enzyme Commission (EC)Intramolecular transferases (mutases)0.4746InformativeInherited
Enzyme Commission (EC)In phosphorous-containing anhydrides1InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides; catalyzing transmembrane movement of substances0Highly InformativeDirect
Enzyme Commission (EC)Phosphotransferases (phosphomutases)0.00005656Highly InformativeDirect
Enzyme Commission (EC)Acting on ether bonds1Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

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KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processAmino-acid biosynthesis0Moderately InformativeDirect
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processIon transport0Moderately InformativeDirect
Biological processProtein transport1Moderately InformativeInherited
Biological processLipid transport0.00000000001817InformativeDirect
Biological processCalcium transport0Highly InformativeDirect
Biological processMethionine biosynthesis0Highly InformativeDirect
Biological processPotassium transport0Highly InformativeDirect
Biological processNucleotide metabolism7.056e-16Highly InformativeDirect
Biological processSodium transport0.00000000005506Highly InformativeDirect
Biological processTranslocation0.0000000004959Highly InformativeDirect
Biological processLipopolysaccharide biosynthesis0.000001672Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentNucleus0.0003614Least InformativeDirect
Cellular componentEndoplasmic reticulum0Moderately InformativeDirect
Cellular componentGolgi apparatus0.000000000001892Moderately InformativeDirect
Cellular componentCell membrane0.0001077Moderately InformativeDirect
Cellular componentPeriplasm0.0003834InformativeDirect
Cellular componentSarcoplasmic reticulum0Highly InformativeDirect
Coding sequence diversityAlternative splicing0.000000002438Least InformativeDirect
DiseaseDisease mutation0.00003484Least InformativeDirect
DomainTransmembrane0Least InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionNucleotide-binding0.000000007085Least InformativeDirect
Molecular functionCalcium0Moderately InformativeDirect
Molecular functionMagnesium0Moderately InformativeDirect
Molecular functionATP-binding0.0000000000009823Moderately InformativeDirect
Molecular functionCalmodulin-binding0InformativeDirect
Molecular functionCopper0InformativeDirect
Molecular functionPotassium0InformativeDirect
Molecular functionSodium0InformativeDirect
Molecular functionCadmium0Highly InformativeDirect
Molecular functionSchiff base0Highly InformativeDirect
Molecular functionChloride0.000000000005064Highly InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationProtein phosphatase0.000000007466InformativeDirect
Post-translational modificationPhosphoprotein0Least InformativeDirect
Post-translational modificationNitration0.00007673InformativeDirect

Document: KW annotation of SCOP domains

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 63 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a HAD-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 63 hidden Markov models representing the HAD-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Worm Phenotype (WP) · Fly Anatomy (FA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]