SUPERFAMILY 1.75 HMM library and genome assignments server


C-type lectin-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   C-type lectin-like [ 56435]
Superfamily:   C-type lectin-like [ 56436] (8)
Families:   C-type lectin domain [ 56437] (28)
  Aerolysin/Pertussis toxin (APT) domain [ 56467] (2)
  Invasin/intimin cell-adhesion fragment, C-terminal domain [ 56472] (2)
  Link domain [ 56477] (2)
  Endostatin [ 56480] (2)
  Noncollagenous (NC1) domain of collagen IV [ 75585]
  Sulfatase-modifying factor-like [ 143959] (2)
  Mtd variable domain [ 143964]


Superfamily statistics
Genomes (1,574) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 24,448 28,663 125
Proteins 17,685 22,343 121


Functional annotation
General category Processes_EC
Detailed category Cell adhesion

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)regulation of cellular process0.67181Least InformativeInherited
Biological Process (BP)single-organism cellular process0.19050.03739Least InformativeInherited
Biological Process (BP)response to stimulus0.0038041.345e-09Least InformativeInherited
Biological Process (BP)multicellular organismal process0.27035.401e-14Least InformativeInherited
Biological Process (BP)multi-organism process6.883e-082.81e-06Moderately InformativeDirect
Biological Process (BP)immune system process9.223e-068.701e-12Moderately InformativeDirect
Biological Process (BP)positive regulation of response to stimulus0.079972.517e-11Moderately InformativeInherited
Biological Process (BP)regulation of developmental process0.088981Moderately InformativeInherited
Biological Process (BP)regulation of multicellular organismal process0.093850.5659Moderately InformativeInherited
Biological Process (BP)negative regulation of cellular process0.042391Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process0.13730.9578Moderately InformativeInherited
Biological Process (BP)biological adhesion3.759e-100InformativeDirect
Biological Process (BP)defense response1.161e-050InformativeDirect
Biological Process (BP)negative regulation of developmental process0.00044490.07767InformativeInherited
Biological Process (BP)positive regulation of cell proliferation0.00023890.6546InformativeInherited
Biological Process (BP)cell adhesion2.153e-100Highly InformativeDirect
Biological Process (BP)ossification9.551e-051.418e-07Highly InformativeDirect
Biological Process (BP)regulation of wound healing5.275e-070.01195Highly InformativeInherited
Biological Process (BP)regulation of epithelial cell differentiation1.479e-080.0141Highly InformativeInherited
Biological Process (BP)negative regulation of cell differentiation0.000260.2921Highly InformativeInherited
Biological Process (BP)positive regulation of epithelial cell proliferation0.00026050.06222Highly InformativeInherited
Molecular Function (MF)binding5.062e-090Least InformativeDirect
Molecular Function (MF)receptor activity2.963e-080InformativeDirect
Molecular Function (MF)monosaccharide binding10.7158Highly InformativeInherited
Cellular Component (CC)membrane0.00055970Least InformativeDirect
Cellular Component (CC)extracellular region part0.00013690Moderately InformativeDirect
Cellular Component (CC)plasma membrane part0.0002060Moderately InformativeDirect
Cellular Component (CC)cell surface4.98e-110InformativeDirect
Cellular Component (CC)extracellular matrix3.659e-060InformativeDirect
Cellular Component (CC)extracellular matrix part2.983e-050Highly InformativeDirect
Cellular Component (CC)proteinaceous extracellular matrix3.24e-050Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 1.345e-09 Least Informative Direct
Biological Process (BP) multicellular organismal process 5.401e-14 Least Informative Direct
Biological Process (BP) developmental process 2.982e-08 Least Informative Direct
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.03739 Least Informative Inherited
Biological Process (BP) localization 0.6986 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 1 Least Informative Inherited
Biological Process (BP) multi-organism process 2.81e-06 Moderately Informative Direct
Biological Process (BP) immune system process 8.701e-12 Moderately Informative Direct
Biological Process (BP) positive regulation of response to stimulus 2.517e-11 Moderately Informative Direct
Biological Process (BP) regulation of signal transduction 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.9578 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.00207 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) tissue development 0.2048 Moderately Informative Inherited
Biological Process (BP) reproduction 0.4235 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 0.9217 Moderately Informative Inherited
Biological Process (BP) system process 1 Moderately Informative Inherited
Biological Process (BP) homeostatic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 0.3828 Moderately Informative Inherited
Biological Process (BP) regulation of macromolecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 1 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.9495 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.002335 Moderately Informative Inherited
Biological Process (BP) organ development 0.06908 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.5659 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 1 Moderately Informative Inherited
Biological Process (BP) carbohydrate derivative metabolic process 1 Moderately Informative Inherited
Biological Process (BP) macromolecule catabolic process 1 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound catabolic process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.001525 Moderately Informative Inherited
Biological Process (BP) biological adhesion 0 Informative Direct
Biological Process (BP) defense response 0 Informative Direct
Biological Process (BP) regulation of immune response 3.866e-09 Informative Direct
Biological Process (BP) positive regulation of immune system process 5.145e-10 Informative Direct
Biological Process (BP) response to wounding 0.0001143 Informative Direct
Biological Process (BP) regulation of cytokine production 5.315e-10 Informative Direct
Biological Process (BP) positive regulation of transport 1.55e-07 Informative Direct
Biological Process (BP) vesicle-mediated transport 1.632e-05 Informative Direct
Biological Process (BP) locomotion 7.439e-05 Informative Direct
Biological Process (BP) cellular component movement 0.0001512 Informative Direct
Biological Process (BP) regulation of immune effector process 0.0003308 Informative Direct
Biological Process (BP) regulation of secretion 0.0005645 Informative Direct
Biological Process (BP) regulation of establishment of protein localization 0.0006245 Informative Direct
Biological Process (BP) cell activation 0.0009649 Informative Direct
Biological Process (BP) cell projection organization 0.02443 Informative Inherited
Biological Process (BP) response to oxidative stress 0.1605 Informative Inherited
Biological Process (BP) generation of neurons 0.2746 Informative Inherited
Biological Process (BP) epithelium development 1 Informative Inherited
Biological Process (BP) tissue morphogenesis 0.6375 Informative Inherited
Biological Process (BP) organ morphogenesis 1 Informative Inherited
Biological Process (BP) reproductive structure development 0.7587 Informative Inherited
Biological Process (BP) response to bacterium 0.06313 Informative Inherited
Biological Process (BP) positive regulation of cellular component organization 1 Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.1611 Informative Inherited
Biological Process (BP) positive regulation of signal transduction 0.1931 Informative Inherited
Biological Process (BP) regulation of defense response 0.3798 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.2613 Informative Inherited
Biological Process (BP) response to organonitrogen compound 0.3248 Informative Inherited
Biological Process (BP) positive regulation of multicellular organismal process 1 Informative Inherited
Biological Process (BP) regulation of ion transport 0.1023 Informative Inherited
Biological Process (BP) negative regulation of developmental process 0.07767 Informative Inherited
Biological Process (BP) gland development 0.2053 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 1 Informative Inherited
Biological Process (BP) positive regulation of protein metabolic process 0.05797 Informative Inherited
Biological Process (BP) positive regulation of cell proliferation 0.6546 Informative Inherited
Biological Process (BP) muscle structure development 0.6289 Informative Inherited
Biological Process (BP) muscle tissue development 0.2633 Informative Inherited
Biological Process (BP) carbohydrate derivative catabolic process 0.8503 Informative Inherited
Biological Process (BP) immune response 0.006344 Informative Inherited
Biological Process (BP) immune effector process 0.9705 Informative Inherited
Biological Process (BP) cell adhesion 0 Highly Informative Direct
Biological Process (BP) ossification 1.418e-07 Highly Informative Direct
Biological Process (BP) positive regulation of defense response 3.912e-05 Highly Informative Direct
Biological Process (BP) regulation of innate immune response 6.012e-05 Highly Informative Direct
Biological Process (BP) regulation of cell killing 0 Highly Informative Direct
Biological Process (BP) regulation of lymphocyte mediated immunity 0 Highly Informative Direct
Biological Process (BP) extracellular matrix organization 0 Highly Informative Direct
Biological Process (BP) regulation of protein processing 1.011e-12 Highly Informative Direct
Biological Process (BP) multicellular organismal catabolic process 3.312e-10 Highly Informative Direct
Biological Process (BP) collagen metabolic process 1.437e-09 Highly Informative Direct
Biological Process (BP) renal system development 4.276e-08 Highly Informative Direct
Biological Process (BP) positive regulation of secretion 1.481e-07 Highly Informative Direct
Biological Process (BP) aminoglycan catabolic process 6.1e-07 Highly Informative Direct
Biological Process (BP) morphogenesis of a branching epithelium 6.488e-05 Highly Informative Direct
Biological Process (BP) positive regulation of ion transport 8.689e-05 Highly Informative Direct
Biological Process (BP) neuron projection development 9.926e-05 Highly Informative Direct
Biological Process (BP) cellular component disassembly 0.0001896 Highly Informative Direct
Biological Process (BP) glycosaminoglycan metabolic process 0.0002083 Highly Informative Direct
Biological Process (BP) muscle fiber development 0.0002705 Highly Informative Direct
Biological Process (BP) chemotaxis 0.0003018 Highly Informative Direct
Biological Process (BP) response to purine-containing compound 0.0003243 Highly Informative Direct
Biological Process (BP) regulation of cytokine biosynthetic process 0.0003457 Highly Informative Direct
Biological Process (BP) protein activation cascade 0.0005542 Highly Informative Direct
Biological Process (BP) cell morphogenesis involved in differentiation 0.0006669 Highly Informative Direct
Biological Process (BP) epithelial tube morphogenesis 0.0008883 Highly Informative Direct
Biological Process (BP) cell part morphogenesis 0.0009235 Highly Informative Direct
Biological Process (BP) regulation of cellular response to stress 0.009967 Highly Informative Inherited
Biological Process (BP) regulation of wound healing 0.01195 Highly Informative Inherited
Biological Process (BP) defense response to bacterium 0.1531 Highly Informative Inherited
Biological Process (BP) regulation of vesicle-mediated transport 0.05208 Highly Informative Inherited
Biological Process (BP) regulation of protein secretion 0.003196 Highly Informative Inherited
Biological Process (BP) positive regulation of protein transport 0.3378 Highly Informative Inherited
Biological Process (BP) tissue homeostasis 0.1325 Highly Informative Inherited
Biological Process (BP) regulation of myeloid cell differentiation 0.2633 Highly Informative Inherited
Biological Process (BP) regulation of epithelial cell differentiation 0.0141 Highly Informative Inherited
Biological Process (BP) positive regulation of cytokine production 0.3997 Highly Informative Inherited
Biological Process (BP) negative regulation of cell differentiation 0.2921 Highly Informative Inherited
Biological Process (BP) regulation of angiogenesis 0.02773 Highly Informative Inherited
Biological Process (BP) positive regulation of epithelial cell proliferation 0.06222 Highly Informative Inherited
Biological Process (BP) aging 0.01554 Highly Informative Inherited
Biological Process (BP) muscle organ development 0.09188 Highly Informative Inherited
Biological Process (BP) phagocytosis 0.002689 Highly Informative Inherited
Biological Process (BP) regulation of leukocyte differentiation 0.4959 Highly Informative Inherited
Biological Process (BP) positive regulation of leukocyte mediated immunity 0.001311 Highly Informative Inherited
Biological Process (BP) inflammatory response 0.001467 Highly Informative Inherited
Biological Process (BP) wound healing 0.01672 Highly Informative Inherited
Biological Process (BP) activation of immune response 0.006393 Highly Informative Inherited
Biological Process (BP) immune response-regulating signaling pathway 0.01402 Highly Informative Inherited
Biological Process (BP) humoral immune response 0.01771 Highly Informative Inherited
Biological Process (BP) innate immune response 1 Highly Informative Inherited
Molecular Function (MF) binding 0 Least Informative Direct
Molecular Function (MF) structural molecule activity 7.424e-06 Moderately Informative Direct
Molecular Function (MF) anion binding 0.2827 Moderately Informative Inherited
Molecular Function (MF) cation binding 0.02371 Moderately Informative Inherited
Molecular Function (MF) receptor activity 0 Informative Direct
Molecular Function (MF) protein dimerization activity 4.092e-06 Informative Direct
Molecular Function (MF) carbohydrate derivative binding 0 Informative Direct
Molecular Function (MF) molecular transducer activity 1.516e-09 Informative Direct
Molecular Function (MF) sulfur compound binding 3.886e-07 Informative Direct
Molecular Function (MF) receptor binding 9.43e-05 Informative Direct
Molecular Function (MF) enzyme binding 0.006756 Informative Inherited
Molecular Function (MF) protein homodimerization activity 3.063e-06 Highly Informative Direct
Molecular Function (MF) calcium ion binding 1.087e-10 Highly Informative Direct
Molecular Function (MF) heparin binding 1.549e-07 Highly Informative Direct
Molecular Function (MF) monosaccharide binding 0.7158 Highly Informative Inherited
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) extracellular region part 0 Moderately Informative Direct
Cellular Component (CC) plasma membrane part 0 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 1 Moderately Informative Inherited
Cellular Component (CC) nuclear part 1 Moderately Informative Inherited
Cellular Component (CC) intrinsic to membrane 1 Moderately Informative Inherited
Cellular Component (CC) endoplasmic reticulum 0.04547 Moderately Informative Inherited
Cellular Component (CC) cell surface 0 Informative Direct
Cellular Component (CC) extracellular matrix 0 Informative Direct
Cellular Component (CC) integral to membrane 0.02041 Informative Inherited
Cellular Component (CC) intrinsic to plasma membrane 1 Informative Inherited
Cellular Component (CC) nucleolus 0.05924 Informative Inherited
Cellular Component (CC) extracellular matrix part 0 Highly Informative Direct
Cellular Component (CC) proteinaceous extracellular matrix 0 Highly Informative Direct
Cellular Component (CC) external side of plasma membrane 0 Highly Informative Direct
Cellular Component (CC) integral to plasma membrane 7.464e-06 Highly Informative Direct
Cellular Component (CC) nucleolar part 2.172e-10 Highly Informative Direct
Cellular Component (CC) neuromuscular junction 7.148e-05 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details) Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)kidney disease0.006494Moderately InformativeInherited
Disease Ontology (DO)lung disease0.01797Moderately InformativeInherited
Disease Ontology (DO)opportunistic mycosis0.0003579InformativeDirect
Disease Ontology (DO)nephritis0.03234InformativeInherited

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0.5203Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the globe0.1027Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the urinary system0.3053Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of urine homeostasis0.003345InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the lens0.004317InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the upper urinary tract0.1132InformativeInherited
Phenotypic Abnormality (PA)Anterior lenticonus9.666e-09Highly InformativeDirect
Phenotypic Abnormality (PA)Hematuria0.0003819Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)immune system phenotype2.511e-06Least InformativeDirect
Mammalian Phenotype (MP)hematopoietic system phenotype0.003812Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.2714Least InformativeInherited
Mammalian Phenotype (MP)cardiovascular system phenotype0.3781Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.9149Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype1Least InformativeInherited
Mammalian Phenotype (MP)abnormal protein level1.346e-05Moderately InformativeDirect
Mammalian Phenotype (MP)renal/urinary system phenotype0.1578Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular system physiology0.1938Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic system physiology0.297Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune serum protein physiology0.4983Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell-mediated immunity0.7924Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal adaptive immunity0.8278Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune cell physiology0.8537Moderately InformativeInherited
Mammalian Phenotype (MP)integument phenotype0.9839Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal leukocyte migration0.02994InformativeInherited
Mammalian Phenotype (MP)abnormal circulating cytokine level0.07896InformativeInherited
Mammalian Phenotype (MP)abnormal renal glomerulus morphology0.1068InformativeInherited
Mammalian Phenotype (MP)other phenotype0.2428InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin level0.2505InformativeInherited
Mammalian Phenotype (MP)hemorrhage0.3379InformativeInherited
Mammalian Phenotype (MP)skin hemorrhage0.0005354Highly InformativeDirect
Mammalian Phenotype (MP)other aberrant phenotype0.04753Highly InformativeInherited
Mammalian Phenotype (MP)abnormal circulating interleukin-17 level0.05726Highly InformativeInherited
Mammalian Phenotype (MP)abnormal cellular extravasation0.1162Highly InformativeInherited
Mammalian Phenotype (MP)abnormal granulocyte physiology0.1226Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism segment morphology variant1Moderately InformativeInherited

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)anatomical group0Least InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus DEvelopment stage (XDE)NF stage0.0006385Least InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0.0001304Least InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases3.707e-05Moderately InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase1.36e-08InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell adhesion0InformativeDirect
Biological processEndocytosis0InformativeDirect
Biological processInflammatory response0InformativeDirect
Biological processInnate immunity1.143e-06InformativeDirect
Biological processCytolysis0.0001123InformativeDirect
Biological processAngiogenesis0.0004015InformativeDirect
Biological processAcute phase3.008e-11Highly InformativeDirect
Biological processHemolysis1.543e-05Highly InformativeDirect
Biological processAdaptive immunity2.611e-05Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentSecreted0Moderately InformativeDirect
Cellular componentExtracellular matrix0InformativeDirect
Coding sequence diversityPolymorphism3.824e-05Moderately InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane5.592e-07Least InformativeDirect
DomainEGF-like domain0InformativeDirect
DomainSignal-anchor0InformativeDirect
DomainImmunoglobulin domain4.514e-08InformativeDirect
DomainCollagen0Highly InformativeDirect
DomainSushi0Highly InformativeDirect
DomainLaminin EGF-like domain1.572e-10Highly InformativeDirect
Molecular functionCalcium0Moderately InformativeDirect
Molecular functionLectin0InformativeDirect
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationToxin0InformativeDirect
Post-translational modificationAntimicrobial2.335e-10InformativeDirect
Post-translational modificationHemagglutinin0Highly InformativeDirect
Post-translational modificationHemostasis impairing toxin0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationDisulfide bond0Least InformativeDirect
Post-translational modificationPalmitate0.0005922Moderately InformativeDirect
Post-translational modificationHydroxylation0InformativeDirect
Post-translational modificationProteoglycan0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 72 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a C-type lectin-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 72 hidden Markov models representing the C-type lectin-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]