SUPERFAMILY 1.75 HMM library and genome assignments server


PurM N-terminal domain-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Bacillus chorismate mutase-like [ 55297] (9)
Superfamily:   PurM N-terminal domain-like [ 55326]
Families:   PurM N-terminal domain-like [ 55327] (6)


Superfamily statistics
Genomes (2,869) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 12,695 31,351 16
Proteins 9,919 24,620 11


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) nitrogen compound metabolic process 1.394e-09 Least Informative Direct
Biological Process (BP) single-organism metabolic process 1.858e-07 Least Informative Direct
Biological Process (BP) biosynthetic process 2.264e-07 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 1.035e-05 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 1.498e-05 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 3.728e-05 Least Informative Direct
Biological Process (BP) organonitrogen compound biosynthetic process 1.075e-10 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 9.76e-07 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 1.321e-06 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 1.325e-06 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 1.522e-06 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 1.818e-06 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 3.473e-06 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 7.338e-06 Moderately Informative Direct
Biological Process (BP) cellular amino acid metabolic process 0.0001737 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.02006 Moderately Informative Inherited
Biological Process (BP) single-organism biosynthetic process 0.007824 Moderately Informative Inherited
Biological Process (BP) purine-containing compound biosynthetic process 2.283e-09 Informative Direct
Biological Process (BP) ribose phosphate biosynthetic process 1.06e-05 Informative Direct
Biological Process (BP) nucleotide biosynthetic process 0.0001597 Informative Direct
Biological Process (BP) purine ribonucleotide metabolic process 1 Informative Inherited
Biological Process (BP) alpha-amino acid biosynthetic process 0.06918 Informative Inherited
Biological Process (BP) cellular modified amino acid metabolic process 0.001138 Informative Inherited
Biological Process (BP) nucleoside monophosphate metabolic process 0.07416 Informative Inherited
Biological Process (BP) nucleobase metabolic process 1.375e-07 Highly Informative Direct
Biological Process (BP) nucleoside monophosphate biosynthetic process 4.436e-06 Highly Informative Direct
Biological Process (BP) cellular modified amino acid biosynthetic process 7.2e-06 Highly Informative Direct
Biological Process (BP) serine family amino acid metabolic process 7.334e-05 Highly Informative Direct
Biological Process (BP) purine ribonucleotide biosynthetic process 8.519e-05 Highly Informative Direct
Molecular Function (MF) binding 0.5263 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.1539 Moderately Informative Inherited
Molecular Function (MF) ligase activity, forming carbon-nitrogen bonds 0 Informative Direct
Molecular Function (MF) protein dimerization activity 0.0001596 Informative Direct
Molecular Function (MF) kinase activity 0.0006007 Informative Direct
Molecular Function (MF) protein heterodimerization activity 2.205e-07 Highly Informative Direct
Molecular Function (MF) protein homodimerization activity 1.663e-05 Highly Informative Direct
Cellular Component (CC) membrane 0.6226 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.5321 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) endomembrane system 8.81e-05 Moderately Informative Direct
Cellular Component (CC) organelle envelope 0.000167 Moderately Informative Direct
Cellular Component (CC) nuclear part 0.04638 Moderately Informative Inherited
Cellular Component (CC) organelle membrane 0.004028 Moderately Informative Inherited
Cellular Component (CC) nuclear envelope 8.593e-08 Informative Direct
Cellular Component (CC) nuclear membrane 3.342e-11 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Transferring one-carbon groups1Least InformativeInherited
Enzyme Commission (EC)Forming carbon-nitrogen bonds0Moderately InformativeDirect
Enzyme Commission (EC)Cyclo-ligases0InformativeDirect
Enzyme Commission (EC)Carbon--nitrogen ligases with glutamine as amido-N0InformativeDirect
Enzyme Commission (EC)Other carbon--nitrogen ligases1InformativeInherited
Enzyme Commission (EC)Phosphotransferases with a phosphate group as acce0.02414InformativeInherited
Enzyme Commission (EC)Hydroxymethyl-, formyl- and related transferases1InformativeInherited
Enzyme Commission (EC)Phosphoribosylformylglycinamidine cyclo-ligase0Highly InformativeDirect
Enzyme Commission (EC)Phosphoribosylformylglycinamidine synthase0Highly InformativeDirect
Enzyme Commission (EC)Phosphoribosylglycinamide formyltransferase6.152e-13Highly InformativeDirect
Enzyme Commission (EC)Phosphoribosylamine--glycine ligase1.655e-12Highly InformativeDirect

Document: EC annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)increased mortality0Least InformativeDirect
Fly Phenotype (FP)visible0Moderately InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system0Least InformativeDirect
Fly Anatomy (FA)cell0Least InformativeDirect
Fly Anatomy (FA)multi-tissue structure0Least InformativeDirect
Fly Anatomy (FA)anatomical group0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)anterior-posterior subdivision of organism1Least InformativeInherited
Fly Anatomy (FA)thoracic segment0Moderately InformativeDirect
Fly Anatomy (FA)adult segment0Moderately InformativeDirect
Fly Anatomy (FA)adult thorax0Moderately InformativeDirect
Fly Anatomy (FA)adult integumentary system0Moderately InformativeDirect
Fly Anatomy (FA)appendage0Moderately InformativeDirect
Fly Anatomy (FA)acellular anatomical structure0Moderately InformativeDirect
Fly Anatomy (FA)tagmatic subdivision of integument0Moderately InformativeDirect
Fly Anatomy (FA)wing blade0InformativeDirect
Fly Anatomy (FA)cuticular specialization0InformativeDirect
Fly Anatomy (FA)wing vein0Highly InformativeDirect

Document: FA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0.9594Least InformativeInherited
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Transferring one-carbon groups1Moderately InformativeInherited
Enzyme Commission (EC)Carbon--nitrogen ligases with glutamine as amido-N-donor0InformativeDirect
Enzyme Commission (EC)Phosphotransferases with a phosphate group as acceptor0.01739InformativeInherited
Enzyme Commission (EC)Hydroxymethyl-, formyl- and related transferases1InformativeInherited
Enzyme Commission (EC)Other carbon--nitrogen ligases1InformativeInherited
Enzyme Commission (EC)Phosphotransferases with paired acceptors0Highly InformativeDirect
Enzyme Commission (EC)Cyclo-ligases0Highly InformativeDirect
Enzyme Commission (EC)Phosphoribosylglycinamide formyltransferase6.705e-13Highly InformativeDirect
Enzyme Commission (EC)Phosphoribosylamine--glycine ligase1.095e-12Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processPurine biosynthesis0InformativeDirect
Biological processThiamine biosynthesis7.783e-10Highly InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Coding sequence diversitySelenocysteine0InformativeDirect
DomainGlutamine amidotransferase0Highly InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationTransferase1Least InformativeInherited
Post-translational modificationKinase0Moderately InformativeDirect
Post-translational modificationLigase0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Fly Phenotype (FP) · Fly Anatomy (FA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 8 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a PurM N-terminal domain-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 8 hidden Markov models representing the PurM N-terminal domain-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Fly Phenotype (FP) · Fly Anatomy (FA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]