SUPERFAMILY 1.75 HMM library and genome assignments server


CYTH-like phosphatases superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   CYTH-like phosphatases [ 55153]
Superfamily:   CYTH-like phosphatases [ 55154] (2)
Families:   mRNA triphosphatase CET1 [ 55155]
  CYTH domain [ 118007] (4)


Superfamily statistics
Genomes (2,210) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 3,082 7,001 5
Proteins 3,076 6,992 5


Functional annotation
General category Information
Detailed category Transcription

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)nitrogen compound metabolic process0.010060.06332Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.0001120.006392Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.00024440.01229Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process0.00011920.007283Least InformativeInherited
Biological Process (BP)sulfur compound metabolic process1.9e-061.145e-05Moderately InformativeDirect
Biological Process (BP)organophosphate metabolic process2.265e-071.444e-05Moderately InformativeDirect
Biological Process (BP)cofactor metabolic process4.303e-062.233e-05Moderately InformativeDirect
Biological Process (BP)phosphate-containing compound metabolic process1.093e-050.001568Moderately InformativeInherited
Biological Process (BP)pyrimidine-containing compound metabolic process4.482e-071.218e-07InformativeDirect
Molecular Function (MF)hydrolase activity0.00027643.43e-06Least InformativeDirect
Molecular Function (MF)binding0.44671Least InformativeInherited
Molecular Function (MF)cation binding1.21e-050.0003785Moderately InformativeDirect
Molecular Function (MF)magnesium ion binding4.161e-092.491e-08InformativeDirect
Molecular Function (MF)nucleoside-triphosphatase activity0.27861InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) nitrogen compound metabolic process 0.06332 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.006392 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.01229 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.007283 Least Informative Inherited
Biological Process (BP) sulfur compound metabolic process 1.145e-05 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 1.444e-05 Moderately Informative Direct
Biological Process (BP) cofactor metabolic process 2.233e-05 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.001568 Moderately Informative Inherited
Biological Process (BP) pyrimidine-containing compound metabolic process 1.218e-07 Informative Direct
Molecular Function (MF) hydrolase activity 3.43e-06 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) cation binding 0.0003785 Moderately Informative Direct
Molecular Function (MF) magnesium ion binding 2.491e-08 Informative Direct
Molecular Function (MF) nucleoside-triphosphatase activity 1 Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on ester bonds0.0001559Least InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0.3199Least InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases0.00155Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases9.368e-16Moderately InformativeDirect
Enzyme Commission (EC)In phosphorous-containing anhydrides8.156e-07Moderately InformativeDirect
Enzyme Commission (EC)mRNA guanylyltransferase0Highly InformativeDirect
Enzyme Commission (EC)Polynucleotide 5'-phosphatase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)whole plant0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)portion of meristem tissue0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)collective phyllome structure0Least InformativeDirect
Plant ANatomical entity (PAN)root system0Least InformativeDirect
Plant ANatomical entity (PAN)shoot axis0Least InformativeDirect
Plant ANatomical entity (PAN)leaf0Least InformativeDirect
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence meristem0Moderately InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases4.73e-15Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups0.01907Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases0Moderately InformativeDirect
Enzyme Commission (EC)Transferring one-carbon groups0.001079Moderately InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases0.001902Moderately InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides0.6301Moderately InformativeInherited
Enzyme Commission (EC)In phosphorous-containing anhydrides7.677e-07InformativeDirect
Enzyme Commission (EC)mRNA (guanine-N(7)-)-methyltransferase0Highly InformativeDirect
Enzyme Commission (EC)mRNA guanylyltransferase0Highly InformativeDirect
Enzyme Commission (EC)Polynucleotide 5'-phosphatase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processmRNA capping6.416e-15Highly InformativeDirect
Cellular componentNucleus3.689e-07Least InformativeDirect
Molecular functionNucleotide-binding0.1517Least InformativeInherited
Molecular functionGTP-binding7.195e-06InformativeDirect
Molecular functionS-adenosyl-L-methionine1.034e-05InformativeDirect
Post-translational modificationHydrolase5.863e-09Least InformativeDirect
Post-translational modificationTransferase0.2287Least InformativeInherited
Post-translational modificationNucleotidyltransferase2.814e-06Moderately InformativeDirect
Post-translational modificationMethyltransferase5.442e-06InformativeDirect
Post-translational modificationAcetylation1.486e-05Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a CYTH-like phosphatases domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the CYTH-like phosphatases superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]