SUPERFAMILY 1.75 HMM library and genome assignments server


CYTH-like phosphatases superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   CYTH-like phosphatases [ 55153]
Superfamily:   CYTH-like phosphatases [ 55154] (2)
Families:   mRNA triphosphatase CET1 [ 55155]
  CYTH domain [ 118007] (4)


Superfamily statistics
Genomes (2,248) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 3,170 0 5
Proteins 3,163 0 5


Functional annotation
General category Information
Detailed category Transcription

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)nitrogen compound metabolic process0.010.0377Least InformativeInherited
Biological Process (BP)heterocycle metabolic process8.983e-050.001683Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.00019470.003556Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process9.483e-050.001948Least InformativeInherited
Biological Process (BP)sulfur compound metabolic process1.808e-061.088e-05Moderately InformativeDirect
Biological Process (BP)organophosphate metabolic process1.82e-071.316e-05Moderately InformativeDirect
Biological Process (BP)cofactor metabolic process4.39e-062.2e-05Moderately InformativeDirect
Biological Process (BP)phosphate-containing compound metabolic process8.579e-060.001431Moderately InformativeInherited
Biological Process (BP)pyrimidine-containing compound metabolic process5.265e-072.909e-07InformativeDirect
Molecular Function (MF)hydrolase activity0.00026661.398e-06Least InformativeDirect
Molecular Function (MF)binding0.431Least InformativeInherited
Molecular Function (MF)cation binding1.002e-050.0003895Moderately InformativeDirect
Molecular Function (MF)magnesium ion binding3.24e-094.154e-08InformativeDirect
Molecular Function (MF)nucleoside-triphosphatase activity0.28181InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) nitrogen compound metabolic process 0.0377 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.001683 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.003556 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.001948 Least Informative Inherited
Biological Process (BP) sulfur compound metabolic process 1.088e-05 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 1.316e-05 Moderately Informative Direct
Biological Process (BP) cofactor metabolic process 2.2e-05 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.001431 Moderately Informative Inherited
Biological Process (BP) pyrimidine-containing compound metabolic process 2.909e-07 Informative Direct
Molecular Function (MF) hydrolase activity 1.398e-06 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) cation binding 0.0003895 Moderately Informative Direct
Molecular Function (MF) magnesium ion binding 4.154e-08 Informative Direct
Molecular Function (MF) nucleoside-triphosphatase activity 1 Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on ester bonds0.0001559Least InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0.3199Least InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases0.00155Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases9.368e-16Moderately InformativeDirect
Enzyme Commission (EC)In phosphorous-containing anhydrides8.156e-07Moderately InformativeDirect
Enzyme Commission (EC)mRNA guanylyltransferase0Highly InformativeDirect
Enzyme Commission (EC)Polynucleotide 5'-phosphatase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)whole plant0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)portion of meristem tissue0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)collective phyllome structure0Least InformativeDirect
Plant ANatomical entity (PAN)root system0Least InformativeDirect
Plant ANatomical entity (PAN)shoot axis0Least InformativeDirect
Plant ANatomical entity (PAN)leaf0Least InformativeDirect
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence meristem0Moderately InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases4.81e-16Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups0.08683Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases0Moderately InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0.001875Moderately InformativeInherited
Enzyme Commission (EC)Transferring one-carbon groups0.006203Moderately InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides0.09467Moderately InformativeInherited
Enzyme Commission (EC)In phosphorous-containing anhydrides2.01e-13InformativeDirect
Enzyme Commission (EC)mRNA (guanine-N(7)-)-methyltransferase0Highly InformativeDirect
Enzyme Commission (EC)mRNA guanylyltransferase0Highly InformativeDirect
Enzyme Commission (EC)Polynucleotide 5'-phosphatase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processmRNA capping5.283e-15Highly InformativeDirect
Cellular componentNucleus1.45e-06Least InformativeDirect
Molecular functionNucleotide-binding0.03529Least InformativeInherited
Molecular functionS-adenosyl-L-methionine0.0001304InformativeDirect
Molecular functionGTP-binding0.0004073InformativeDirect
Post-translational modificationHydrolase1.32e-11Least InformativeDirect
Post-translational modificationTransferase0.6425Least InformativeInherited
Post-translational modificationNucleotidyltransferase2.614e-05Moderately InformativeDirect
Post-translational modificationMethyltransferase5.409e-05InformativeDirect
Post-translational modificationAcetylation0.0001277Least InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)biopolymer metabolism5.082e-07Least InformativeDirect
UniPathway (UP)mRNA processing0Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a CYTH-like phosphatases domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the CYTH-like phosphatases superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]