SUPERFAMILY 1.75 HMM library and genome assignments server


GroEL-intermediate domain like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   GroEL-intermediate domain like [ 54848]
Superfamily:   GroEL-intermediate domain like [ 54849] (2)
Families:   GroEL-like chaperone, intermediate domain [ 54850]
  Group II chaperonin (CCT, TRIC), intermediate domain [ 54853]


Superfamily statistics
Genomes (2,966) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 9,244 14,708 29
Proteins 9,080 14,576 29


Functional annotation
General category Processes_IC
Detailed category Protein modification

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) protein metabolic process 2.608e-13 Least Informative Direct
Biological Process (BP) multicellular organismal process 2.702e-06 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 1.08e-08 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 2.649e-06 Least Informative Direct
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.2495 Least Informative Inherited
Biological Process (BP) reproduction 0 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 9.877e-05 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.0006442 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 0.0001222 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.0294 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.4301 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.07697 Moderately Informative Inherited
Biological Process (BP) macromolecule catabolic process 0.6576 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound catabolic process 0.00526 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.02325 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.001356 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.1312 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound catabolic process 0.004846 Moderately Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0.3032 Moderately Informative Inherited
Biological Process (BP) cytoskeleton organization 0.0001286 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 4.708e-06 Informative Direct
Biological Process (BP) hexose metabolic process 3.374e-05 Informative Direct
Biological Process (BP) sexual reproduction 6.714e-10 Informative Direct
Biological Process (BP) cellular macromolecular complex assembly 8.336e-08 Informative Direct
Biological Process (BP) single organism reproductive process 0 Informative Direct
Biological Process (BP) purine ribonucleoside metabolic process 8.665e-05 Informative Direct
Biological Process (BP) cellular process involved in reproduction 0 Informative Direct
Biological Process (BP) glycosyl compound catabolic process 0.0006235 Informative Direct
Biological Process (BP) response to inorganic substance 0.01495 Informative Inherited
Biological Process (BP) vesicle-mediated transport 0.04729 Informative Inherited
Biological Process (BP) microtubule-based process 0.009044 Informative Inherited
Biological Process (BP) proteolysis 1 Informative Inherited
Biological Process (BP) protein catabolic process 0.4814 Informative Inherited
Biological Process (BP) cellular macromolecule catabolic process 0.4431 Informative Inherited
Biological Process (BP) purine ribonucleotide metabolic process 1 Informative Inherited
Biological Process (BP) nucleobase-containing compound catabolic process 0.001121 Informative Inherited
Biological Process (BP) carbohydrate derivative catabolic process 0.001851 Informative Inherited
Biological Process (BP) organophosphate catabolic process 0.003413 Informative Inherited
Biological Process (BP) nucleoside monophosphate metabolic process 0.01195 Informative Inherited
Biological Process (BP) cell cycle process 0.2855 Informative Inherited
Biological Process (BP) protein complex assembly 0.3746 Informative Inherited
Biological Process (BP) nucleoside triphosphate metabolic process 0.09762 Informative Inherited
Biological Process (BP) protein folding 0 Highly Informative Direct
Biological Process (BP) nucleoside monophosphate catabolic process 5.396e-07 Highly Informative Direct
Biological Process (BP) purine ribonucleotide catabolic process 1.989e-05 Highly Informative Direct
Biological Process (BP) purine ribonucleoside triphosphate catabolic process 1.139e-05 Highly Informative Direct
Biological Process (BP) response to heat 7.819e-07 Highly Informative Direct
Biological Process (BP) fertilization 0 Highly Informative Direct
Biological Process (BP) proteasomal protein catabolic process 4.341e-05 Highly Informative Direct
Biological Process (BP) ATP metabolic process 8.264e-07 Highly Informative Direct
Biological Process (BP) purine ribonucleoside catabolic process 1.738e-05 Highly Informative Direct
Biological Process (BP) monosaccharide biosynthetic process 9.881e-07 Highly Informative Direct
Biological Process (BP) response to cadmium ion 0.0001508 Highly Informative Direct
Biological Process (BP) microtubule cytoskeleton organization 0.1798 Highly Informative Inherited
Molecular Function (MF) binding 4.417e-05 Least Informative Direct
Molecular Function (MF) hydrolase activity 0.6187 Least Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.0006711 Informative Direct
Molecular Function (MF) unfolded protein binding 0 Highly Informative Direct
Cellular Component (CC) protein complex 0.0001643 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.006667 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cytosol 0 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 0.0003149 Moderately Informative Direct
Cellular Component (CC) vesicle 2.937e-08 Moderately Informative Direct
Cellular Component (CC) extracellular region part 0.2537 Moderately Informative Inherited
Cellular Component (CC) organelle envelope 0.008907 Moderately Informative Inherited
Cellular Component (CC) secretory granule 8.676e-06 Informative Direct
Cellular Component (CC) extracellular membrane-bounded organelle 0.0003897 Informative Direct
Cellular Component (CC) plastid 0.4207 Informative Inherited
Cellular Component (CC) chloroplast stroma 0.0001194 Highly Informative Direct
Cellular Component (CC) cell body 0 Highly Informative Direct
Cellular Component (CC) sperm part 1.412e-08 Highly Informative Direct

Document: GO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)growth variant0Least InformativeDirect
Worm Phenotype (WP)larval development variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant2.487e-06Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant6.128e-05Least InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant1.645e-10Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal1.818e-10Moderately InformativeDirect
Worm Phenotype (WP)protein aggregation variant1.073e-07Moderately InformativeDirect
Worm Phenotype (WP)gametogenesis variant2.173e-07Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant5.425e-07Moderately InformativeDirect
Worm Phenotype (WP)endocytic transport defect1.838e-06Moderately InformativeDirect
Worm Phenotype (WP)cell death variant0.002616Moderately InformativeInherited
Worm Phenotype (WP)germ cell morphology variant0.0229Moderately InformativeInherited
Worm Phenotype (WP)pattern of transgene expression variant0.2232Moderately InformativeInherited
Worm Phenotype (WP)pleiotropic defects severe early emb1.52e-12InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant1.96e-12InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant4.552e-11InformativeDirect
Worm Phenotype (WP)germline nuclear positioning variant2.187e-10InformativeDirect
Worm Phenotype (WP)receptor mediated endocytosis defective8.69e-08InformativeDirect
Worm Phenotype (WP)pigmentation variant2.813e-07InformativeDirect
Worm Phenotype (WP)transgene expression increased4.41e-07InformativeDirect
Worm Phenotype (WP)protruding vulva5.867e-07InformativeDirect
Worm Phenotype (WP)sick0.0001812InformativeDirect
Worm Phenotype (WP)cell corpse number variant0.09631InformativeInherited
Worm Phenotype (WP)rachis morphology variant0.1336InformativeInherited
Worm Phenotype (WP)cell division variant0.1777InformativeInherited
Worm Phenotype (WP)meiotic chromosome organization variant0.7481InformativeInherited
Worm Phenotype (WP)oocytes small1.87e-15Highly InformativeDirect
Worm Phenotype (WP)germ cell compartment anucleate4.889e-08Highly InformativeDirect
Worm Phenotype (WP)accumulated germline cell corpses6.55e-07Highly InformativeDirect
Worm Phenotype (WP)chromosome condensation variant4.001e-05Highly InformativeDirect
Worm Phenotype (WP)cell membrane organization biogenesis variant0.0006864Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)digestive system0.01081Least InformativeInherited
Zebrafish Anatomy (ZA)liver0.0008734Moderately InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)male organism0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)gonad0Least InformativeDirect
Xenopus ANatomical entity (XAN)embryo0.07695Least InformativeInherited
Xenopus ANatomical entity (XAN)portion of tissue0.2494Least InformativeInherited
Xenopus ANatomical entity (XAN)musculoskeletal system0.00152Moderately InformativeInherited
Xenopus ANatomical entity (XAN)embryonic structure0.04453Moderately InformativeInherited
Xenopus ANatomical entity (XAN)skeletal muscle2.025e-05InformativeDirect
Xenopus ANatomical entity (XAN)hematological system7.09e-05InformativeDirect
Xenopus ANatomical entity (XAN)mesoderm0.007338InformativeInherited
Xenopus ANatomical entity (XAN)lateral plate mesoderm0.002238Highly InformativeInherited

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)whole plant0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)collective phyllome structure0Least InformativeDirect
Plant ANatomical entity (PAN)shoot axis0Least InformativeDirect
Plant ANatomical entity (PAN)leaf0Least InformativeDirect
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)seed development stage2.573e-09InformativeDirect
Plant structure DEvelopment stage (PDE)0 seed germination stage0.000184InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor0Moderately InformativeDirect
Enzyme Commission (EC)1-phosphatidylinositol-3-phosphate 5-kinase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processStress response0InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
DomainTransit peptide7.874e-08Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationChaperone0InformativeDirect
Post-translational modificationAcetylation0.0002798Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 7 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a GroEL-intermediate domain like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 7 hidden Markov models representing the GroEL-intermediate domain like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]