SUPERFAMILY 1.75 HMM library and genome assignments server


Ribosomal protein L22 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein L22 [ 54842]
Superfamily:   Ribosomal protein L22 [ 54843]
Families:   Ribosomal protein L22 [ 54844]


Superfamily statistics
Genomes (3,230) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,422 19,299 12
Proteins 4,412 19,290 12


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Cellular Component (CC)intracellular organelle part0.027270.2899Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.0031187.39e-12Least InformativeInherited
Cellular Component (CC)intracellular non-membrane-bounded organelle0.0081140.02619Least InformativeInherited
Cellular Component (CC)ribonucleoprotein complex3.156e-054.672e-09Moderately InformativeDirect
Cellular Component (CC)cytosol0.035330.335Moderately InformativeInherited
Cellular Component (CC)large ribosomal subunit1.317e-080InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 6.718e-05 Least Informative Direct
Biological Process (BP) protein metabolic process 0.0006358 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0001154 Least Informative Direct
Biological Process (BP) gene expression 1.086e-05 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 8.97e-07 Moderately Informative Direct
Molecular Function (MF) structural molecule activity 1.769e-12 Moderately Informative Direct
Molecular Function (MF) structural constituent of ribosome 0 Informative Direct
Cellular Component (CC) cytoplasmic part 7.39e-12 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.2899 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.02619 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 4.672e-09 Moderately Informative Direct
Cellular Component (CC) cytosol 0.335 Moderately Informative Inherited
Cellular Component (CC) large ribosomal subunit 0 Informative Direct

Document: GO annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Molecular functionRNA-binding0Moderately InformativeDirect
Molecular functionrRNA-binding0InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR001063 SSF54843 Protein matches
Abstract

Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L22 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Ribosomal protein L22 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]