SUPERFAMILY 1.75 HMM library and genome assignments server


Ribosomal protein L31e superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein L31e [ 54574]
Superfamily:   Ribosomal protein L31e [ 54575]
Families:   Ribosomal protein L31e [ 54576]


Superfamily statistics
Genomes (590) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 1,044 1,166 4
Proteins 1,044 1,165 4


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process3.867e-053.996e-05Least InformativeDirect
Biological Process (BP)protein metabolic process9.182e-064.993e-05Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process5.258e-050.0005698Least InformativeDirect
Biological Process (BP)gene expression2.205e-084.187e-07Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process1.26e-082.318e-07Moderately InformativeDirect
Biological Process (BP)translation1.011e-111.561e-11InformativeDirect
Molecular Function (MF)structural molecule activity5.404e-101.16e-09Moderately InformativeDirect
Molecular Function (MF)structural constituent of ribosome2.432e-112.144e-12InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle1.997e-101.207e-08Least InformativeDirect
Cellular Component (CC)cytoplasmic part1.978e-062.318e-06Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0022730.006195Least InformativeInherited
Cellular Component (CC)ribonucleoprotein complex3.806e-114.026e-11Moderately InformativeDirect
Cellular Component (CC)cytosol0.0042510.001963Moderately InformativeInherited
Cellular Component (CC)large ribosomal subunit00InformativeDirect
Cellular Component (CC)cytosolic ribosome0.12230.01961InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 3.996e-05 Least Informative Direct
Biological Process (BP) protein metabolic process 4.993e-05 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0005698 Least Informative Direct
Biological Process (BP) gene expression 4.187e-07 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 2.318e-07 Moderately Informative Direct
Biological Process (BP) translation 1.561e-11 Informative Direct
Molecular Function (MF) structural molecule activity 1.16e-09 Moderately Informative Direct
Molecular Function (MF) structural constituent of ribosome 2.144e-12 Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 1.207e-08 Least Informative Direct
Cellular Component (CC) cytoplasmic part 2.318e-06 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.006195 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 4.026e-11 Moderately Informative Direct
Cellular Component (CC) cytosol 0.001963 Moderately Informative Inherited
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.01961 Informative Inherited

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)whole plant0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)portion of meristem tissue0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)collective phyllome structure0Least InformativeDirect
Plant ANatomical entity (PAN)root system0Least InformativeDirect
Plant ANatomical entity (PAN)shoot axis0Least InformativeDirect
Plant ANatomical entity (PAN)leaf0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0Least InformativeDirect
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence meristem0Moderately InformativeDirect
Plant ANatomical entity (PAN)cotyledon0Moderately InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000054 SSF54575 Protein matches
Abstract

A number of eukaryotic and archaebacterial large subunit ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 87 to 128 amino-acid residues. This family consists of:

  • Yeast L34
  • Archaeal L31 [PubMed2207169]
  • Plants L31
  • Mammalian L31 [PubMed3816785]

  • InterPro database


    PDBeMotif information about ligands, sequence and structure motifs
    Cross references PDB entries
    Ligand binding statistics
    Nucleic-acid binding statistics
    Occurrence of secondary structure elements
    Occurrence of small 3D structural motifs

    PDBeMotif resource

    Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

    Internal database links

    Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


    Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


    Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L31e domain.


    Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


    Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

    There are 1 hidden Markov models representing the Ribosomal protein L31e superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


    Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]