SUPERFAMILY 1.75 HMM library and genome assignments server


Ubiquitin-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   beta-Grasp (ubiquitin-like) [ 54235] (14)
Superfamily:   Ubiquitin-like [ 54236] (8)
Families:   Ubiquitin-related [ 54237] (38)
  UBX domain [ 54250] (5)
  GABARAP-like [ 54253] (3)
  First domain of FERM [ 54256] (6)
  Ras-binding domain, RBD [ 54263] (13)
  BM-002-like [ 75362] (3)
  APG12-like [ 142972]
  DIX domain [ 159926]


Superfamily statistics
Genomes (533) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 42,419 37,436 156
Proteins 35,635 31,486 155


Functional annotation
General category General
Detailed category General

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)protein metabolic process1.285e-120Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process2.299e-086.322e-12Least InformativeDirect
Biological Process (BP)response to stimulus0.34910.001512Least InformativeInherited
Biological Process (BP)regulation of cellular process0.015029.964e-09Least InformativeInherited
Biological Process (BP)regulation of metabolic process0.00025941Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process11Least InformativeInherited
Biological Process (BP)single-organism metabolic process11Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process11Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process11Least InformativeInherited
Biological Process (BP)single-organism cellular process0.59751.493e-11Least InformativeInherited
Biological Process (BP)localization0.39620.06121Least InformativeInherited
Biological Process (BP)multicellular organismal process0.39580.01212Least InformativeInherited
Biological Process (BP)response to endogenous stimulus0.72851Moderately InformativeInherited
Biological Process (BP)cellular response to chemical stimulus0.51091Moderately InformativeInherited
Biological Process (BP)response to organic substance0.66570.3874Moderately InformativeInherited
Biological Process (BP)macromolecule localization0.0011542.239e-10Moderately InformativeInherited
Biological Process (BP)cellular localization0.019360.004641Moderately InformativeInherited
Biological Process (BP)organic substance catabolic process10.0002896Moderately InformativeInherited
Biological Process (BP)regulation of localization0.73830.9427Moderately InformativeInherited
Biological Process (BP)positive regulation of metabolic process3.944e-050.9145Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process0.0087541Moderately InformativeInherited
Biological Process (BP)regulation of protein metabolic process0.019620Moderately InformativeInherited
Biological Process (BP)regulation of cellular metabolic process2.91e-051Moderately InformativeInherited
Biological Process (BP)cellular protein modification process4.799e-060.1709Moderately InformativeInherited
Biological Process (BP)ion transport0.44781Moderately InformativeInherited
Biological Process (BP)organic substance transport0.48231Moderately InformativeInherited
Biological Process (BP)cellular catabolic process0.021094.181e-10Moderately InformativeInherited
Biological Process (BP)organic hydroxy compound metabolic process0.59851Moderately InformativeInherited
Biological Process (BP)system process0.740.5541Moderately InformativeInherited
Biological Process (BP)protein modification by small protein conjugation or removal00InformativeDirect
Biological Process (BP)regulation of cellular catabolic process0.0058370InformativeInherited
Biological Process (BP)positive regulation of protein metabolic process0.024512.333e-06InformativeInherited
Biological Process (BP)cellular response to endogenous stimulus0.21570.5018InformativeInherited
Biological Process (BP)nitrogen compound transport0.37251InformativeInherited
Biological Process (BP)proteolysis0.72411.348e-09InformativeInherited
Biological Process (BP)protein catabolic process0.098410InformativeInherited
Biological Process (BP)cellular macromolecule catabolic process0.2570InformativeInherited
Biological Process (BP)response to external stimulus2.755e-050.1284InformativeInherited
Biological Process (BP)synaptic transmission0.028810.1859InformativeInherited
Biological Process (BP)autophagy2.614e-142.19e-09Highly InformativeDirect
Biological Process (BP)monoamine transport9.037e-051.461e-05Highly InformativeDirect
Biological Process (BP)regulation of protein ubiquitination4.082e-080Highly InformativeDirect
Biological Process (BP)regulation of protein catabolic process0.00037670Highly InformativeDirect
Biological Process (BP)regulation of proteolysis0.001882.081e-14Highly InformativeInherited
Biological Process (BP)organic hydroxy compound transport0.0026150.01682Highly InformativeInherited
Biological Process (BP)cellular response to growth factor stimulus0.0067750.01314Highly InformativeInherited
Biological Process (BP)diol metabolic process0.0011110.001882Highly InformativeInherited
Biological Process (BP)phenol-containing compound metabolic process0.0026150.05205Highly InformativeInherited
Biological Process (BP)neuromuscular process0.00018050.07955Highly InformativeInherited
Biological Process (BP)regulation of neurotransmitter levels0.002040.3669Highly InformativeInherited
Biological Process (BP)neurotransmitter transport0.0030870.02861Highly InformativeInherited
Molecular Function (MF)binding0.14850Least InformativeInherited
Molecular Function (MF)hydrolase activity11Least InformativeInherited
Molecular Function (MF)protein binding4.376e-050Moderately InformativeDirect
Molecular Function (MF)hydrolase activity, acting on ester bonds0.7150.7669Moderately InformativeInherited
Molecular Function (MF)ligase activity, forming carbon-nitrogen bonds1.133e-131.513e-08InformativeDirect
Molecular Function (MF)enzyme binding0.012875.258e-07InformativeInherited
Molecular Function (MF)phosphoric ester hydrolase activity0.18460.07579InformativeInherited
Molecular Function (MF)small conjugating protein ligase activity3.613e-134.514e-10Highly InformativeDirect
Molecular Function (MF)phosphoprotein phosphatase activity0.0012237.383e-06Highly InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle0.059341Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.35161Least InformativeInherited
Cellular Component (CC)cytoplasmic part10.6649Least InformativeInherited
Cellular Component (CC)nuclear part0.018240.6684Moderately InformativeInherited
Cellular Component (CC)intracellular organelle lumen0.00035511Moderately InformativeInherited
Cellular Component (CC)nucleoplasm part0.0013921InformativeInherited
Cellular Component (CC)vacuole2.75e-090.06627InformativeInherited
Cellular Component (CC)nuclear body4.983e-080.00018Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) protein metabolic process 0 Least Informative Direct
Biological Process (BP) developmental process 0.000962 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 6.322e-12 Least Informative Direct
Biological Process (BP) single-organism cellular process 1.493e-11 Least Informative Direct
Biological Process (BP) regulation of cellular process 9.964e-09 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 1.158e-14 Least Informative Direct
Biological Process (BP) response to stimulus 0.001512 Least Informative Inherited
Biological Process (BP) localization 0.06121 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.01212 Least Informative Inherited
Biological Process (BP) organelle organization 2.615e-08 Moderately Informative Direct
Biological Process (BP) signal transduction 7.148e-07 Moderately Informative Direct
Biological Process (BP) regulation of cell communication 1.132e-07 Moderately Informative Direct
Biological Process (BP) regulation of signaling 1.372e-09 Moderately Informative Direct
Biological Process (BP) macromolecule localization 2.239e-10 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 4.181e-10 Moderately Informative Direct
Biological Process (BP) regulation of protein metabolic process 0 Moderately Informative Direct
Biological Process (BP) regulation of molecular function 6.905e-07 Moderately Informative Direct
Biological Process (BP) organic substance catabolic process 0.0002896 Moderately Informative Direct
Biological Process (BP) cellular protein modification process 0.1709 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 0.3874 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 0.003261 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.9269 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 0.01668 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 0.01774 Moderately Informative Inherited
Biological Process (BP) system process 0.5541 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.9427 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 0.001589 Moderately Informative Inherited
Biological Process (BP) macromolecular complex subunit organization 0.9102 Moderately Informative Inherited
Biological Process (BP) cellular localization 0.004641 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.001738 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 1 Moderately Informative Inherited
Biological Process (BP) regulation of nitrogen compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) immune system process 0.8003 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.9145 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.6689 Moderately Informative Inherited
Biological Process (BP) monocarboxylic acid metabolic process 1 Moderately Informative Inherited
Biological Process (BP) small molecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) ion transport 1 Moderately Informative Inherited
Biological Process (BP) organic substance transport 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.9687 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.0167 Moderately Informative Inherited
Biological Process (BP) reproduction 0.6032 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.0484 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.05725 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.9682 Moderately Informative Inherited
Biological Process (BP) cellular lipid metabolic process 0.3846 Moderately Informative Inherited
Biological Process (BP) lipid biosynthetic process 0.02332 Moderately Informative Inherited
Biological Process (BP) organic hydroxy compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) homeostatic process 1 Moderately Informative Inherited
Biological Process (BP) tissue development 0.5489 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.8193 Moderately Informative Inherited
Biological Process (BP) proteolysis 1.348e-09 Informative Direct
Biological Process (BP) phospholipid metabolic process 1.824e-06 Informative Direct
Biological Process (BP) cytoskeleton organization 1.881e-08 Informative Direct
Biological Process (BP) positive regulation of phosphorus metabolic process 1.38e-07 Informative Direct
Biological Process (BP) regulation of intracellular protein kinase cascade 0.000182 Informative Direct
Biological Process (BP) negative regulation of cell communication 0.0007357 Informative Direct
Biological Process (BP) cellular membrane organization 2.682e-06 Informative Direct
Biological Process (BP) regulation of anatomical structure morphogenesis 1.251e-07 Informative Direct
Biological Process (BP) negative regulation of signaling 0.0001874 Informative Direct
Biological Process (BP) actin filament-based process 5.015e-10 Informative Direct
Biological Process (BP) protein catabolic process 0 Informative Direct
Biological Process (BP) regulation of cellular catabolic process 0 Informative Direct
Biological Process (BP) cellular macromolecule catabolic process 0 Informative Direct
Biological Process (BP) glycerolipid metabolic process 1.658e-09 Informative Direct
Biological Process (BP) negative regulation of response to stimulus 0.0007416 Informative Direct
Biological Process (BP) embryonic morphogenesis 4.199e-05 Informative Direct
Biological Process (BP) tissue morphogenesis 0.0005123 Informative Direct
Biological Process (BP) positive regulation of protein metabolic process 2.333e-06 Informative Direct
Biological Process (BP) negative regulation of protein metabolic process 5.73e-06 Informative Direct
Biological Process (BP) protein modification by small protein conjugation or removal 0 Informative Direct
Biological Process (BP) embryonic organ development 0.7257 Informative Inherited
Biological Process (BP) cell projection organization 0.05246 Informative Inherited
Biological Process (BP) cellular response to endogenous stimulus 0.5018 Informative Inherited
Biological Process (BP) regulation of cell cycle process 0.7293 Informative Inherited
Biological Process (BP) chromosome organization 1 Informative Inherited
Biological Process (BP) cell cycle process 0.9808 Informative Inherited
Biological Process (BP) cellular process involved in reproduction 0.7138 Informative Inherited
Biological Process (BP) protein phosphorylation 1 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 0.2603 Informative Inherited
Biological Process (BP) negative regulation of developmental process 0.9208 Informative Inherited
Biological Process (BP) regulation of nervous system development 0.02841 Informative Inherited
Biological Process (BP) regulation of cellular component biogenesis 0.0622 Informative Inherited
Biological Process (BP) negative regulation of cellular component organization 1 Informative Inherited
Biological Process (BP) synaptic transmission 0.1859 Informative Inherited
Biological Process (BP) nitrogen compound transport 1 Informative Inherited
Biological Process (BP) cellular macromolecular complex assembly 0.3834 Informative Inherited
Biological Process (BP) regulation of system process 0.7236 Informative Inherited
Biological Process (BP) growth 0.8167 Informative Inherited
Biological Process (BP) generation of neurons 0.6529 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.04681 Informative Inherited
Biological Process (BP) cellular component movement 0.1929 Informative Inherited
Biological Process (BP) locomotion 0.09461 Informative Inherited
Biological Process (BP) localization of cell 0.1191 Informative Inherited
Biological Process (BP) response to external stimulus 0.1284 Informative Inherited
Biological Process (BP) regulation of anatomical structure size 1 Informative Inherited
Biological Process (BP) protein localization to organelle 0.07164 Informative Inherited
Biological Process (BP) positive regulation of catalytic activity 0.07961 Informative Inherited
Biological Process (BP) regulation of protein phosphorylation 1 Informative Inherited
Biological Process (BP) regulation of kinase activity 0.09422 Informative Inherited
Biological Process (BP) regulation of hydrolase activity 0.9804 Informative Inherited
Biological Process (BP) apoptotic process 0.7121 Informative Inherited
Biological Process (BP) response to DNA damage stimulus 0.9059 Informative Inherited
Biological Process (BP) cell activation 0.03279 Informative Inherited
Biological Process (BP) regulation of intracellular transport 0.007482 Informative Inherited
Biological Process (BP) regulation of protein localization 0.2353 Informative Inherited
Biological Process (BP) dephosphorylation 0.4894 Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 1 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 0.9749 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 1 Informative Inherited
Biological Process (BP) regulation of immune response 1 Informative Inherited
Biological Process (BP) positive regulation of immune system process 0.8885 Informative Inherited
Biological Process (BP) regulation of response to stress 0.8089 Informative Inherited
Biological Process (BP) positive regulation of signal transduction 0.01986 Informative Inherited
Biological Process (BP) positive regulation of multicellular organismal process 1 Informative Inherited
Biological Process (BP) regulation of cytokine production 1 Informative Inherited
Biological Process (BP) posttranscriptional regulation of gene expression 0.003561 Informative Inherited
Biological Process (BP) negative regulation of cellular metabolic process 0.3978 Informative Inherited
Biological Process (BP) microtubule-based process 0.01479 Informative Inherited
Biological Process (BP) fatty acid metabolic process 1 Informative Inherited
Biological Process (BP) monocarboxylic acid biosynthetic process 1 Informative Inherited
Biological Process (BP) DNA metabolic process 1 Informative Inherited
Biological Process (BP) intracellular signal transduction 0.002766 Informative Inherited
Biological Process (BP) regulation of cell development 0.3034 Informative Inherited
Biological Process (BP) regulation of growth 0.8927 Informative Inherited
Biological Process (BP) sensory organ development 0.03897 Informative Inherited
Biological Process (BP) organ morphogenesis 0.08028 Informative Inherited
Biological Process (BP) epithelium development 0.5206 Informative Inherited
Biological Process (BP) chordate embryonic development 1 Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.5493 Informative Inherited
Biological Process (BP) leukocyte homeostasis 1.192e-06 Highly Informative Direct
Biological Process (BP) autophagy 2.19e-09 Highly Informative Direct
Biological Process (BP) establishment or maintenance of cell polarity 4.008e-15 Highly Informative Direct
Biological Process (BP) small GTPase mediated signal transduction 0.000111 Highly Informative Direct
Biological Process (BP) regulation of nucleoside metabolic process 5.461e-07 Highly Informative Direct
Biological Process (BP) monoamine transport 1.461e-05 Highly Informative Direct
Biological Process (BP) modification-dependent protein catabolic process 0.0001982 Highly Informative Direct
Biological Process (BP) regulation of cell morphogenesis 2.096e-08 Highly Informative Direct
Biological Process (BP) regulation of proteolysis 2.081e-14 Highly Informative Direct
Biological Process (BP) lipid modification 4.673e-05 Highly Informative Direct
Biological Process (BP) stress-activated protein kinase signaling cascade 6.988e-05 Highly Informative Direct
Biological Process (BP) negative regulation of cellular catabolic process 9.398e-08 Highly Informative Direct
Biological Process (BP) regulation of protein ubiquitination 0 Highly Informative Direct
Biological Process (BP) regulation of protein stability 6.565e-06 Highly Informative Direct
Biological Process (BP) response to endoplasmic reticulum stress 7.789e-06 Highly Informative Direct
Biological Process (BP) response to topologically incorrect protein 1.498e-05 Highly Informative Direct
Biological Process (BP) B cell activation 4.154e-06 Highly Informative Direct
Biological Process (BP) regulation of protein catabolic process 0 Highly Informative Direct
Biological Process (BP) glycerophospholipid biosynthetic process 3.963e-06 Highly Informative Direct
Biological Process (BP) phosphatidylinositol metabolic process 0 Highly Informative Direct
Biological Process (BP) leukocyte migration 0.0001021 Highly Informative Direct
Biological Process (BP) maintenance of location 0.000311 Highly Informative Direct
Biological Process (BP) protein polymerization 0.0002786 Highly Informative Direct
Biological Process (BP) regulation of cell cycle arrest 6.392e-06 Highly Informative Direct
Biological Process (BP) protein ubiquitination 1 Highly Informative Inherited
Biological Process (BP) organic hydroxy compound transport 0.01682 Highly Informative Inherited
Biological Process (BP) regulation of organ morphogenesis 0.1067 Highly Informative Inherited
Biological Process (BP) inner ear development 0.2708 Highly Informative Inherited
Biological Process (BP) embryonic organ morphogenesis 0.3607 Highly Informative Inherited
Biological Process (BP) cellular response to growth factor stimulus 0.01314 Highly Informative Inherited
Biological Process (BP) positive regulation of cell cycle process 0.4467 Highly Informative Inherited
Biological Process (BP) meiosis 0.06167 Highly Informative Inherited
Biological Process (BP) response to hypoxia 0.3529 Highly Informative Inherited
Biological Process (BP) regulation of binding 0.01682 Highly Informative Inherited
Biological Process (BP) regulation of neurological system process 0.006076 Highly Informative Inherited
Biological Process (BP) epidermis development 0.006329 Highly Informative Inherited
Biological Process (BP) developmental growth 0.08894 Highly Informative Inherited
Biological Process (BP) axonogenesis 1 Highly Informative Inherited
Biological Process (BP) gastrulation 0.01022 Highly Informative Inherited
Biological Process (BP) chemotaxis 0.05139 Highly Informative Inherited
Biological Process (BP) regulation of cellular component size 0.5904 Highly Informative Inherited
Biological Process (BP) regulation of purine nucleotide catabolic process 0.01644 Highly Informative Inherited
Biological Process (BP) positive regulation of MAPK cascade 1 Highly Informative Inherited
Biological Process (BP) regulation of MAP kinase activity 0.09254 Highly Informative Inherited
Biological Process (BP) positive regulation of protein serine/threonine kinase activity 0.2588 Highly Informative Inherited
Biological Process (BP) signal transduction by p53 class mediator 0.001028 Highly Informative Inherited
Biological Process (BP) diol metabolic process 0.001882 Highly Informative Inherited
Biological Process (BP) regulation of intracellular protein transport 0.00196 Highly Informative Inherited
Biological Process (BP) regulation of nucleocytoplasmic transport 0.02209 Highly Informative Inherited
Biological Process (BP) regulation of protein localization to nucleus 0.003904 Highly Informative Inherited
Biological Process (BP) protein dephosphorylation 0.8827 Highly Informative Inherited
Biological Process (BP) regulation of innate immune response 0.731 Highly Informative Inherited
Biological Process (BP) activation of immune response 0.157 Highly Informative Inherited
Biological Process (BP) immune response-regulating signaling pathway 0.7624 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to stress 0.006393 Highly Informative Inherited
Biological Process (BP) negative regulation of RNA metabolic process 1 Highly Informative Inherited
Biological Process (BP) positive regulation of cytokine production 0.4087 Highly Informative Inherited
Biological Process (BP) negative regulation of multicellular organismal process 0.2252 Highly Informative Inherited
Biological Process (BP) microtubule cytoskeleton organization 0.5684 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to growth factor stimulus 0.002914 Highly Informative Inherited
Biological Process (BP) proteasomal protein catabolic process 1 Highly Informative Inherited
Biological Process (BP) negative regulation of signal transduction 0.07606 Highly Informative Inherited
Biological Process (BP) cell projection assembly 0.2165 Highly Informative Inherited
Biological Process (BP) regulation of cell adhesion 0.3044 Highly Informative Inherited
Biological Process (BP) eye morphogenesis 0.05293 Highly Informative Inherited
Biological Process (BP) regulation of gene expression, epigenetic 0.6805 Highly Informative Inherited
Biological Process (BP) DNA methylation or demethylation 0.03937 Highly Informative Inherited
Biological Process (BP) pattern specification process 0.0332 Highly Informative Inherited
Biological Process (BP) phenol-containing compound metabolic process 0.05205 Highly Informative Inherited
Biological Process (BP) apoptotic signaling pathway 0.07745 Highly Informative Inherited
Biological Process (BP) regulation of developmental growth 0.3186 Highly Informative Inherited
Biological Process (BP) cell growth 0.04641 Highly Informative Inherited
Biological Process (BP) MAPK cascade 0.04763 Highly Informative Inherited
Biological Process (BP) protein folding 0.5961 Highly Informative Inherited
Biological Process (BP) neuromuscular process 0.07955 Highly Informative Inherited
Biological Process (BP) morphogenesis of embryonic epithelium 0.00807 Highly Informative Inherited
Biological Process (BP) regulation of neurotransmitter levels 0.3669 Highly Informative Inherited
Biological Process (BP) neurotransmitter transport 0.02861 Highly Informative Inherited
Biological Process (BP) cellular response to starvation 0.3421 Highly Informative Inherited
Biological Process (BP) organelle assembly 0.19 Highly Informative Inherited
Molecular Function (MF) binding 0 Least Informative Direct
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) transferase activity 0.8961 Least Informative Inherited
Molecular Function (MF) protein binding 0 Moderately Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 1.755e-05 Moderately Informative Direct
Molecular Function (MF) enzyme regulator activity 1.21e-12 Moderately Informative Direct
Molecular Function (MF) organic cyclic compound binding 1 Moderately Informative Inherited
Molecular Function (MF) heterocyclic compound binding 1 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 0.7669 Moderately Informative Inherited
Molecular Function (MF) cytoskeletal protein binding 1.789e-09 Informative Direct
Molecular Function (MF) ligase activity, forming carbon-nitrogen bonds 1.513e-08 Informative Direct
Molecular Function (MF) enzyme binding 5.258e-07 Informative Direct
Molecular Function (MF) GTPase regulator activity 0 Informative Direct
Molecular Function (MF) kinase activity 0.07577 Informative Inherited
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 0.01154 Informative Inherited
Molecular Function (MF) DNA binding 1 Informative Inherited
Molecular Function (MF) peptidase activity 0.2739 Informative Inherited
Molecular Function (MF) phosphoric ester hydrolase activity 0.07579 Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 1 Informative Inherited
Molecular Function (MF) nucleotidyltransferase activity 0.9408 Informative Inherited
Molecular Function (MF) phosphoprotein phosphatase activity 7.383e-06 Highly Informative Direct
Molecular Function (MF) small conjugating protein ligase activity 4.514e-10 Highly Informative Direct
Molecular Function (MF) protein complex binding 3.529e-06 Highly Informative Direct
Molecular Function (MF) structure-specific DNA binding 0.06837 Highly Informative Inherited
Molecular Function (MF) small GTPase regulator activity 0.007008 Highly Informative Inherited
Molecular Function (MF) guanyl-nucleotide exchange factor activity 0.002375 Highly Informative Inherited
Molecular Function (MF) protein kinase activity 1 Highly Informative Inherited
Molecular Function (MF) thiolester hydrolase activity 0.02004 Highly Informative Inherited
Molecular Function (MF) adenylyltransferase activity 0.003009 Highly Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 1.095e-07 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.6649 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) membrane 0.281 Least Informative Inherited
Cellular Component (CC) protein complex 0.03536 Least Informative Inherited
Cellular Component (CC) cytosol 0 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 1.74e-06 Moderately Informative Direct
Cellular Component (CC) cell projection 3.129e-15 Moderately Informative Direct
Cellular Component (CC) extracellular region 1 Moderately Informative Inherited
Cellular Component (CC) endoplasmic reticulum 0.5769 Moderately Informative Inherited
Cellular Component (CC) endomembrane system 0.04409 Moderately Informative Inherited
Cellular Component (CC) organelle membrane 0.3208 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 1 Moderately Informative Inherited
Cellular Component (CC) plasma membrane 0.6556 Moderately Informative Inherited
Cellular Component (CC) nuclear part 0.6684 Moderately Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 1 Moderately Informative Inherited
Cellular Component (CC) ubiquitin ligase complex 0.0009945 Informative Direct
Cellular Component (CC) cell cortex 1.614e-15 Informative Direct
Cellular Component (CC) actin cytoskeleton 0.000112 Informative Direct
Cellular Component (CC) cell junction 0 Informative Direct
Cellular Component (CC) cell leading edge 0 Informative Direct
Cellular Component (CC) cell projection part 2.495e-05 Informative Direct
Cellular Component (CC) synapse 0.0003954 Informative Direct
Cellular Component (CC) neuron part 0.005081 Informative Inherited
Cellular Component (CC) extracellular matrix 1 Informative Inherited
Cellular Component (CC) endoplasmic reticulum membrane 0.003706 Informative Inherited
Cellular Component (CC) nucleoplasm part 1 Informative Inherited
Cellular Component (CC) vacuole 0.06627 Informative Inherited
Cellular Component (CC) chromosome 1 Informative Inherited
Cellular Component (CC) ruffle 1.97e-09 Highly Informative Direct
Cellular Component (CC) actin filament 0.0006642 Highly Informative Direct
Cellular Component (CC) adherens junction 0 Highly Informative Direct
Cellular Component (CC) internal side of plasma membrane 0.0004585 Highly Informative Direct
Cellular Component (CC) basolateral plasma membrane 0.0004949 Highly Informative Direct
Cellular Component (CC) nuclear body 0.00018 Highly Informative Direct
Cellular Component (CC) lamellipodium 8.49e-07 Highly Informative Direct
Cellular Component (CC) cell-substrate junction 1.221e-05 Highly Informative Direct
Cellular Component (CC) axon part 0.679 Highly Informative Inherited
Cellular Component (CC) proteinaceous extracellular matrix 0.7613 Highly Informative Inherited
Cellular Component (CC) cell-cell junction 1 Highly Informative Inherited
Cellular Component (CC) spliceosomal complex 0.1131 Highly Informative Inherited
Cellular Component (CC) chromatin 0.5523 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)5.609e-14Least InformativeDirect
Enzyme Commission (EC)Acting on ester bonds0.0102Least InformativeInherited
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Omega peptidases0Moderately InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases4.359e-12Moderately InformativeDirect
Enzyme Commission (EC)Phosphoric monoester hydrolases4.443e-10Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep3.067e-05Moderately InformativeDirect
Enzyme Commission (EC)Acting on the CH-CH group of donors0.00289Moderately InformativeInherited
Enzyme Commission (EC)Non-specific protein-tyrosine kinase1.949e-13InformativeDirect
Enzyme Commission (EC)Protein-tyrosine-phosphatase3.66e-06InformativeDirect
Enzyme Commission (EC)Phosphatidylinositol-4-phosphate 3-kinase0Highly InformativeDirect
Enzyme Commission (EC)Phosphatidylinositol-4,5-bisphosphate 3-kinase0Highly InformativeDirect
Enzyme Commission (EC)Phosphatidylinositol 3-kinase6.12e-10Highly InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormal respiratory system morphology0.5799Moderately InformativeInherited
Phenotypic Abnormality (PA)Neoplasm by anatomical site0.8814InformativeInherited
Phenotypic Abnormality (PA)Alveolar cell carcinoma0.0001309Highly InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.006354Least InformativeInherited
Worm Phenotype (WP)protein aggregation variant1.573e-05Moderately InformativeDirect
Worm Phenotype (WP)protein aggregation induced paralysis0.05939InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)development0.005928InformativeInherited

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)cell polarity defective0.0007682InformativeDirect

Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)head0.001779Least InformativeInherited
Xenopus ANatomical entity (XAN)central nervous system0.003402Least InformativeInherited
Xenopus ANatomical entity (XAN)viscus0.2403Least InformativeInherited
Xenopus ANatomical entity (XAN)immune system0.009399Moderately InformativeInherited
Xenopus ANatomical entity (XAN)spleen0.000136InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)plant cell0.000982Least InformativeDirect
Plant ANatomical entity (PAN)pollen tube cell0.0001398InformativeDirect
Plant structure DEvelopment stage (PDE)pollen development stage5.708e-06Moderately InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups9.49e-16Least InformativeDirect
Enzyme Commission (EC)Hydrolases1.152e-11Least InformativeDirect
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)9.49e-16Moderately InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases1.374e-11Moderately InformativeDirect
Enzyme Commission (EC)Phosphoric monoester hydrolases4.986e-10Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor6.551e-05Moderately InformativeDirect
Enzyme Commission (EC)Omega peptidases0InformativeDirect
Enzyme Commission (EC)Protein-tyrosine-phosphatase3.312e-06InformativeDirect
Enzyme Commission (EC)Protein-tyrosine kinases3.373e-06InformativeDirect
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor1.049e-05InformativeDirect
Enzyme Commission (EC)Phosphoric diester hydrolases0.05822InformativeInherited
Enzyme Commission (EC)Phosphatidylinositol-4-phosphate 3-kinase0Highly InformativeDirect
Enzyme Commission (EC)Non-specific protein-tyrosine kinase2.968e-13Highly InformativeDirect
Enzyme Commission (EC)Phosphoinositide phospholipase C3.402e-07Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport2.268e-07Least InformativeDirect
Biological processProtein transport0Moderately InformativeDirect
Biological processApoptosis1.826e-15Moderately InformativeDirect
Biological processAngiogenesis0InformativeDirect
Biological processUbl conjugation pathway0InformativeDirect
Biological processWnt signaling pathway0InformativeDirect
Biological processEndocytosis4.799e-08InformativeDirect
Biological processAutophagy0Highly InformativeDirect
Biological processUnfolded protein response0Highly InformativeDirect
Biological processmRNA transport4.18e-14Highly InformativeDirect
Biological processCilium biogenesis/degradation4.609e-08Highly InformativeDirect
Biological processExocytosis7.622e-06Highly InformativeDirect
Biological processAntiviral defense1.546e-05Highly InformativeDirect
Cellular componentNucleus0Least InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Cellular componentMembrane1.522e-05Least InformativeDirect
Cellular componentCytoskeleton0Moderately InformativeDirect
Cellular componentEndoplasmic reticulum0Moderately InformativeDirect
Cellular componentCell junction0Moderately InformativeDirect
Cellular componentCell projection0Moderately InformativeDirect
Cellular componentCytoplasmic vesicle0Moderately InformativeDirect
Cellular componentGolgi apparatus1.381e-06Moderately InformativeDirect
Cellular componentMicrotubule0InformativeDirect
Cellular componentVacuole0InformativeDirect
Cellular componentProteasome1.659e-09Highly InformativeDirect
Cellular componentLipid droplet9.799e-09Highly InformativeDirect
Coding sequence diversityAlternative splicing0.0001307Least InformativeDirect
DiseaseTumor suppressor9.311e-08Moderately InformativeDirect
DiseaseProto-oncogene5.453e-06Moderately InformativeDirect
DomainRepeat0Least InformativeDirect
DomainCoiled coil0Moderately InformativeDirect
DomainSH2 domain4.235e-11InformativeDirect
DomainSH3 domain5.51e-06InformativeDirect
Molecular functionZinc0.0009574Least InformativeDirect
Molecular functionMetal-binding1Least InformativeInherited
Molecular functionZinc-finger0Moderately InformativeDirect
Molecular functionActin-binding0InformativeDirect
Molecular functionCalmodulin-binding6.05e-08InformativeDirect
Molecular functionLipid-binding0.0003654InformativeDirect
Molecular functioncAMP0.0001029Highly InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationTransferase1Least InformativeInherited
Post-translational modificationDevelopmental protein0Moderately InformativeDirect
Post-translational modificationProtease0.001364Moderately InformativeInherited
Post-translational modificationKinase0.1196Moderately InformativeInherited
Post-translational modificationGuanine-nucleotide releasing factor0InformativeDirect
Post-translational modificationThiol protease0InformativeDirect
Post-translational modificationProtein phosphatase1.696e-12InformativeDirect
Post-translational modificationGTPase activation3.124e-12InformativeDirect
Post-translational modificationChromatin regulator2.246e-07InformativeDirect
Post-translational modificationSerine/threonine-protein kinase3.837e-06InformativeDirect
Post-translational modificationMyosin0Highly InformativeDirect
Post-translational modificationActin capping5.951e-06Highly InformativeDirect
Post-translational modificationSignal transduction inhibitor8.1e-06Highly InformativeDirect
Post-translational modificationTyrosine-protein kinase0.0004013Highly InformativeDirect
Post-translational modificationPhosphoprotein8.882e-16Least InformativeDirect
Post-translational modificationUbl conjugation0Moderately InformativeDirect
Post-translational modificationIsopeptide bond0Moderately InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)biopolymer metabolism0Least InformativeDirect
UniPathway (UP)lipid metabolism0.03067Least InformativeInherited
UniPathway (UP)protein ubiquitination0Moderately InformativeDirect
UniPathway (UP)phospholipid metabolism2.249e-10InformativeDirect
UniPathway (UP)phosphatidylinositol phosphate biosynthesis0Highly InformativeDirect
UniPathway (UP)protein degradation3.678e-06Highly InformativeDirect

Document: UP annotation of SCOP domains

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 79 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ubiquitin-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 79 hidden Markov models representing the Ubiquitin-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]