SUPERFAMILY 1.75 HMM library and genome assignments server


Periplasmic binding protein-like I superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Periplasmic binding protein-like I [ 53821]
Superfamily:   Periplasmic binding protein-like I [ 53822]
Families:   L-arabinose binding protein-like [ 53823] (16)


Superfamily statistics
Genomes (1,981) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 36,176 110,242 47
Proteins 35,656 109,738 47


Functional annotation
General category Regulation
Detailed category DNA-binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)multicellular organismal process0.19680Least InformativeInherited
Biological Process (BP)localization0.003350.005783Least InformativeInherited
Biological Process (BP)single-organism cellular process0.8241.488e-12Least InformativeInherited
Biological Process (BP)response to stimulus0.96680Least InformativeInherited
Biological Process (BP)system process0.00074950Moderately InformativeDirect
Biological Process (BP)ion transport0.12070Moderately InformativeInherited
Biological Process (BP)organic substance transport0.00044261Moderately InformativeInherited
Biological Process (BP)anion transport0.0003951InformativeInherited
Biological Process (BP)organic acid transport0.0014280.003599InformativeInherited
Biological Process (BP)nitrogen compound transport0.036450.5903InformativeInherited
Biological Process (BP)defense response0.083580.3057InformativeInherited
Biological Process (BP)single-organism behavior0.0019853.303e-10InformativeInherited
Biological Process (BP)amino acid transport2.083e-061.022e-06Highly InformativeDirect
Molecular Function (MF)hydrolase activity0.070621Least InformativeInherited
Molecular Function (MF)transporter activity1.037e-050Moderately InformativeDirect
Molecular Function (MF)receptor activity1.644e-050InformativeDirect
Molecular Function (MF)molecular transducer activity3.743e-050InformativeDirect
Molecular Function (MF)nucleoside-triphosphatase activity5.096e-060.6941InformativeInherited
Molecular Function (MF)active transmembrane transporter activity0.0077721InformativeInherited
Molecular Function (MF)anion transmembrane transporter activity0.045481InformativeInherited
Molecular Function (MF)amino acid transmembrane transporter activity9.795e-081.421e-06Highly InformativeDirect
Cellular Component (CC)cytoplasmic part11Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle11Least InformativeInherited
Cellular Component (CC)protein complex0.012170Least InformativeInherited
Cellular Component (CC)membrane0.010690Least InformativeInherited
Cellular Component (CC)vesicle0.028731.983e-11Moderately InformativeInherited
Cellular Component (CC)plasma membrane0.031670Moderately InformativeInherited
Cellular Component (CC)intrinsic to membrane0.009710Moderately InformativeInherited
Cellular Component (CC)synapse6.526e-080InformativeDirect
Cellular Component (CC)intrinsic to plasma membrane6.148e-060InformativeDirect
Cellular Component (CC)coated vesicle0.00015811.29e-11InformativeDirect
Cellular Component (CC)integral to membrane0.00042610InformativeDirect
Cellular Component (CC)neuron part0.0040480InformativeInherited
Cellular Component (CC)receptor complex7.366e-140Highly InformativeDirect
Cellular Component (CC)synaptic membrane1.121e-060Highly InformativeDirect
Cellular Component (CC)integral to plasma membrane3.589e-060Highly InformativeDirect
Cellular Component (CC)clathrin-coated vesicle7.676e-050Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) multicellular organismal process 0 Least Informative Direct
Biological Process (BP) single-organism cellular process 1.488e-12 Least Informative Direct
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) localization 0.005783 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.001153 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) system process 0 Moderately Informative Direct
Biological Process (BP) ion transport 0 Moderately Informative Direct
Biological Process (BP) signal transduction 0 Moderately Informative Direct
Biological Process (BP) homeostatic process 5.364e-08 Moderately Informative Direct
Biological Process (BP) regulation of signaling 6.563e-05 Moderately Informative Direct
Biological Process (BP) regulation of cell communication 0.0007614 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) carbohydrate derivative metabolic process 0.2035 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.2356 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.5241 Moderately Informative Inherited
Biological Process (BP) regulation of molecular function 1 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.2079 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) nucleobase-containing small molecule metabolic process 0.02462 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) reproduction 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.002921 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.6394 Moderately Informative Inherited
Biological Process (BP) response to organic substance 0.8745 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 0.2048 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of nitrogen compound metabolic process 0.735 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 0.8227 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 1 Moderately Informative Inherited
Biological Process (BP) organic substance transport 1 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 0.02811 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 0.04039 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 0.04346 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.06008 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 0.1693 Moderately Informative Inherited
Biological Process (BP) single-organism behavior 3.303e-10 Informative Direct
Biological Process (BP) synaptic transmission 0 Informative Direct
Biological Process (BP) regulation of system process 0 Informative Direct
Biological Process (BP) response to organic nitrogen 0 Informative Direct
Biological Process (BP) transmembrane transport 3.837e-13 Informative Direct
Biological Process (BP) purine-containing compound biosynthetic process 2.52e-12 Informative Direct
Biological Process (BP) cellular response to nitrogen compound 2.232e-09 Informative Direct
Biological Process (BP) nucleotide biosynthetic process 4.07e-09 Informative Direct
Biological Process (BP) regulation of secretion 2.946e-08 Informative Direct
Biological Process (BP) regulation of ion transport 8.706e-06 Informative Direct
Biological Process (BP) cellular response to oxygen-containing compound 9.777e-06 Informative Direct
Biological Process (BP) positive regulation of multicellular organismal process 1.798e-05 Informative Direct
Biological Process (BP) purine nucleotide metabolic process 2.645e-05 Informative Direct
Biological Process (BP) ribose phosphate metabolic process 9.794e-05 Informative Direct
Biological Process (BP) regulation of response to external stimulus 0.0001807 Informative Direct
Biological Process (BP) positive regulation of transport 0.0002829 Informative Direct
Biological Process (BP) cellular response to endogenous stimulus 0.5697 Informative Inherited
Biological Process (BP) metal ion transport 0.00116 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 0.9544 Informative Inherited
Biological Process (BP) multi-organism reproductive process 0.02155 Informative Inherited
Biological Process (BP) response to external stimulus 0.8083 Informative Inherited
Biological Process (BP) metal ion homeostasis 0.3587 Informative Inherited
Biological Process (BP) regulation of cellular component biogenesis 0.9843 Informative Inherited
Biological Process (BP) response to inorganic substance 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 0.002052 Informative Inherited
Biological Process (BP) negative regulation of cell communication 0.002194 Informative Inherited
Biological Process (BP) regulation of nervous system development 0.05884 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 0.5811 Informative Inherited
Biological Process (BP) organic acid transport 0.003599 Informative Inherited
Biological Process (BP) anion transport 1 Informative Inherited
Biological Process (BP) single organism reproductive process 1 Informative Inherited
Biological Process (BP) negative regulation of cell death 0.1699 Informative Inherited
Biological Process (BP) regulation of apoptotic process 0.01724 Informative Inherited
Biological Process (BP) regulation of body fluid levels 0.9545 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.1233 Informative Inherited
Biological Process (BP) regulation of organelle organization 1 Informative Inherited
Biological Process (BP) negative regulation of molecular function 0.2786 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 0.5786 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 0.7036 Informative Inherited
Biological Process (BP) central nervous system development 0.3827 Informative Inherited
Biological Process (BP) intracellular signal transduction 1 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.2246 Informative Inherited
Biological Process (BP) generation of neurons 0.2362 Informative Inherited
Biological Process (BP) regulation of cell development 0.3086 Informative Inherited
Biological Process (BP) response to light stimulus 0.01708 Informative Inherited
Biological Process (BP) negative regulation of cellular metabolic process 1 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 1 Informative Inherited
Biological Process (BP) nitrogen compound transport 0.5903 Informative Inherited
Biological Process (BP) defense response 0.3057 Informative Inherited
Biological Process (BP) amino acid transport 1.022e-06 Highly Informative Direct
Biological Process (BP) calcium ion transport 0 Highly Informative Direct
Biological Process (BP) adult behavior 0 Highly Informative Direct
Biological Process (BP) response to acid 0 Highly Informative Direct
Biological Process (BP) regulation of neurological system process 0 Highly Informative Direct
Biological Process (BP) regulation of neuron apoptotic process 1.186e-13 Highly Informative Direct
Biological Process (BP) ion transmembrane transport 3.649e-13 Highly Informative Direct
Biological Process (BP) negative regulation of response to external stimulus 3.559e-10 Highly Informative Direct
Biological Process (BP) regulation of membrane potential 1.076e-09 Highly Informative Direct
Biological Process (BP) positive regulation of ion transport 5.747e-08 Highly Informative Direct
Biological Process (BP) negative regulation of multicellular organismal process 1.812e-07 Highly Informative Direct
Biological Process (BP) learning or memory 1.02e-05 Highly Informative Direct
Biological Process (BP) negative regulation of neuron death 3.266e-05 Highly Informative Direct
Biological Process (BP) telencephalon development 3.705e-05 Highly Informative Direct
Biological Process (BP) response to ethanol 0.0001831 Highly Informative Direct
Biological Process (BP) response to toxic substance 0.0002152 Highly Informative Direct
Biological Process (BP) response to alkaloid 0.0007458 Highly Informative Direct
Biological Process (BP) response to calcium ion 0.0009035 Highly Informative Direct
Biological Process (BP) multi-multicellular organism process 0.1418 Highly Informative Inherited
Biological Process (BP) sensory perception 1 Highly Informative Inherited
Biological Process (BP) regulation of cell projection organization 0.001523 Highly Informative Inherited
Biological Process (BP) regulation of neuron differentiation 0.1266 Highly Informative Inherited
Biological Process (BP) regulation of cell morphogenesis 0.07559 Highly Informative Inherited
Biological Process (BP) negative regulation of apoptotic process 0.1458 Highly Informative Inherited
Biological Process (BP) regulation of vesicle-mediated transport 0.7128 Highly Informative Inherited
Biological Process (BP) positive regulation of secretion 0.002538 Highly Informative Inherited
Biological Process (BP) G-protein coupled receptor signaling pathway 0.00278 Highly Informative Inherited
Biological Process (BP) multi-organism behavior 0.04031 Highly Informative Inherited
Biological Process (BP) feeding behavior 0.00502 Highly Informative Inherited
Biological Process (BP) neuromuscular process 0.2787 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transporter activity 0 Moderately Informative Direct
Molecular Function (MF) lyase activity 0 Moderately Informative Direct
Molecular Function (MF) protein binding 0.002073 Moderately Informative Inherited
Molecular Function (MF) anion binding 0.1578 Moderately Informative Inherited
Molecular Function (MF) cation binding 0.2364 Moderately Informative Inherited
Molecular Function (MF) receptor activity 0 Informative Direct
Molecular Function (MF) molecular transducer activity 0 Informative Direct
Molecular Function (MF) carboxylic acid binding 0 Informative Direct
Molecular Function (MF) inorganic cation transmembrane transporter activity 0.329 Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.6941 Informative Inherited
Molecular Function (MF) active transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) anion transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) metal ion transmembrane transporter activity 0.004958 Informative Inherited
Molecular Function (MF) amino acid transmembrane transporter activity 1.421e-06 Highly Informative Direct
Molecular Function (MF) ion gated channel activity 0 Highly Informative Direct
Molecular Function (MF) ion channel activity 0 Highly Informative Direct
Molecular Function (MF) channel regulator activity 3.637e-09 Highly Informative Direct
Molecular Function (MF) hormone binding 7.174e-05 Highly Informative Direct
Molecular Function (MF) G-protein coupled receptor activity 1 Highly Informative Inherited
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) protein complex 0 Least Informative Direct
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) intrinsic to membrane 0 Moderately Informative Direct
Cellular Component (CC) vesicle 1.983e-11 Moderately Informative Direct
Cellular Component (CC) plasma membrane 0 Moderately Informative Direct
Cellular Component (CC) cell projection 0 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 0.0006314 Moderately Informative Direct
Cellular Component (CC) synapse 0 Informative Direct
Cellular Component (CC) intrinsic to plasma membrane 0 Informative Direct
Cellular Component (CC) coated vesicle 1.29e-11 Informative Direct
Cellular Component (CC) integral to membrane 0 Informative Direct
Cellular Component (CC) neuron part 0 Informative Direct
Cellular Component (CC) cell projection part 0 Informative Direct
Cellular Component (CC) receptor complex 0 Highly Informative Direct
Cellular Component (CC) synaptic membrane 0 Highly Informative Direct
Cellular Component (CC) integral to plasma membrane 0 Highly Informative Direct
Cellular Component (CC) clathrin-coated vesicle 0 Highly Informative Direct
Cellular Component (CC) cell body 0 Highly Informative Direct
Cellular Component (CC) dendrite 2.087e-10 Highly Informative Direct
Cellular Component (CC) axon part 0.002078 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited
Enzyme Commission (EC)Guanylate cyclase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.0002075Least InformativeDirect
Disease Ontology (DO)cognitive disorder0.04237Moderately InformativeInherited
Disease Ontology (DO)brain disease0.284Moderately InformativeInherited
Disease Ontology (DO)neurodegenerative disease0.3555Moderately InformativeInherited
Disease Ontology (DO)motor neuron disease0.0003664InformativeDirect
Disease Ontology (DO)focal epilepsy0.01261InformativeInherited
Disease Ontology (DO)developmental disorder of mental health0.1644InformativeInherited
Disease Ontology (DO)temporal lobe epilepsy9.403e-10Highly InformativeDirect
Disease Ontology (DO)amyotrophic lateral sclerosis2.371e-07Highly InformativeDirect
Disease Ontology (DO)autistic disorder0.0001322Highly InformativeDirect
Disease Ontology (DO)bipolar disorder0.0003989Highly InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.0002419Least InformativeDirect
Mammalian Phenotype (MP)behavior/neurological phenotype0.0002243Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal nervous system physiology0.004719Moderately InformativeInherited
Mammalian Phenotype (MP)integument phenotype0.365Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal learning/memory/conditioning0.0008247InformativeDirect
Mammalian Phenotype (MP)seizures0.01104InformativeInherited
Mammalian Phenotype (MP)abnormal touch/ nociception0.05364InformativeInherited
Mammalian Phenotype (MP)abnormal long term depression5.95e-07Highly InformativeDirect
Mammalian Phenotype (MP)abnormal glutamate-mediated receptor currents0.0001099Highly InformativeDirect
Mammalian Phenotype (MP)hyperalgesia0.0002795Highly InformativeDirect
Mammalian Phenotype (MP)absence seizures0.0009068Highly InformativeDirect
Mammalian Phenotype (MP)taste/olfaction phenotype0.004316Highly InformativeInherited
Mammalian Phenotype (MP)abnormal avoidance learning behavior0.6551Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant2.67e-08Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.6948Least InformativeInherited
Worm Phenotype (WP)chemical response variant0.0004527Moderately InformativeDirect
Worm Phenotype (WP)chemotaxis variant0InformativeDirect
Worm Phenotype (WP)electrophysiology variant1.192e-05InformativeDirect
Worm Phenotype (WP)lipid metabolism variant0.001162InformativeInherited
Worm Phenotype (WP)metabolic pathway variant1.82e-06Highly InformativeDirect
Worm Phenotype (WP)carbon dioxide avoidance variant6.777e-06Highly InformativeDirect
Worm Phenotype (WP)pharyngeal pumping variant8.007e-06Highly InformativeDirect
Worm Phenotype (WP)isothermal tracking behavior variant2.023e-05Highly InformativeDirect
Worm Phenotype (WP)aqueous positive chemotaxis defective0.009618Highly InformativeInherited
Worm Phenotype (WP)odorant positive chemotaxis variant0.9973Highly InformativeInherited
Worm Phenotype (WP)negative chemotaxis variant1Highly InformativeInherited

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)peripheral nervous system0Moderately InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus DEvelopment stage (XDE)embryonic stage0.002435Least InformativeInherited
Xenopus DEvelopment stage (XDE)tailbud stage0.02056Moderately InformativeInherited
Xenopus DEvelopment stage (XDE)NF stage 35 and 366.378e-05InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect

Document: EC annotation of SCOP domains

DrugBank ATC (DB)

(show details)
DB termFDR (all)SDDB levelAnnotation (direct or inherited)
Drugbank ATC_code (DB)digestives, incl. enzymes4.786e-11Moderately InformativeDirect
Drugbank ATC_code (DB)nervous system0.01916Moderately InformativeInherited
Drugbank ATC_code (DB)glutamic acid hydrochloride0InformativeDirect
Drugbank ATC_code (DB)drugs used in alcohol dependence1.068e-05InformativeDirect
Drugbank ATC_code (DB)other anti-dementia drugs6.877e-05InformativeDirect
Drugbank ATC_code (DB)cardiac therapy0.0326InformativeInherited
Drugbank ATC_code (DB)acamprosate2.82e-07Highly InformativeDirect
Drugbank ATC_code (DB)other vasodilators used in cardiac diseases2.467e-05Highly InformativeDirect

Document: DB annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processIon transport0Moderately InformativeDirect
Biological processTranscription regulation0Moderately InformativeDirect
Biological processCarbohydrate metabolism0.9815Moderately InformativeInherited
Biological processPurine biosynthesis0InformativeDirect
Biological processSensory transduction0InformativeDirect
Biological processCell shape2.326e-10InformativeDirect
Biological processChemotaxis3.599e-07InformativeDirect
Biological processAmino-acid transport0Highly InformativeDirect
Biological processLigand-gated ion channel0Highly InformativeDirect
Biological processPeptidoglycan synthesis5.88e-13Highly InformativeDirect
Biological processOsteogenesis5.41e-08Highly InformativeDirect
Biological processSugar transport0.0008548Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentCell junction0Moderately InformativeDirect
Cellular componentCell membrane0Moderately InformativeDirect
Cellular componentCell projection0.0005619Moderately InformativeDirect
Cellular componentPeriplasm0InformativeDirect
Cellular componentPostsynaptic cell membrane0InformativeDirect
Cellular componentSynapse0InformativeDirect
Cellular componentCell outer membrane6.314e-10InformativeDirect
Coding sequence diversityRNA editing6.967e-07Moderately InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane0Least InformativeDirect
Molecular functionNucleotide-binding1Least InformativeInherited
Molecular functionDNA-binding0Moderately InformativeDirect
Molecular functionCalcium6.909e-16Moderately InformativeDirect
Molecular functionGTP-binding0.0004434InformativeDirect
Molecular functionChloride2.604e-05Highly InformativeDirect
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationRepressor0Moderately InformativeDirect
Post-translational modificationIon channel0InformativeDirect
Post-translational modificationTransducer0InformativeDirect
Post-translational modificationG-protein coupled receptor0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationPalmitate4.498e-16Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · DrugBank ATC (DB) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 18 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Periplasmic binding protein-like I domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 18 hidden Markov models representing the Periplasmic binding protein-like I superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · DrugBank ATC (DB) · UniProtKB KeyWords (KW) · Internal database links ]