SUPERFAMILY 1.75 HMM library and genome assignments server


Periplasmic binding protein-like I superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Periplasmic binding protein-like I [ 53821]
Superfamily:   Periplasmic binding protein-like I [ 53822]
Families:   L-arabinose binding protein-like [ 53823] (16)


Superfamily statistics
Genomes (2,601) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 44,557 110,242 47
Proteins 44,015 109,738 47


Functional annotation
General category Regulation
Detailed category DNA-binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)localization0.00010185.604e-05Least InformativeDirect
Biological Process (BP)multicellular organismal process0.21010Least InformativeInherited
Biological Process (BP)single-organism cellular process0.07040Least InformativeInherited
Biological Process (BP)regulation of cellular process0.27632.642e-07Least InformativeInherited
Biological Process (BP)response to stimulus0.85860Least InformativeInherited
Biological Process (BP)system process0.00076820Moderately InformativeDirect
Biological Process (BP)ion transport0.032830Moderately InformativeInherited
Biological Process (BP)signal transduction0.03760Moderately InformativeInherited
Biological Process (BP)organic substance transport5.671e-051Moderately InformativeInherited
Biological Process (BP)transmission of nerve impulse2.855e-050InformativeDirect
Biological Process (BP)anion transport5.649e-071InformativeInherited
Biological Process (BP)organic acid transport3.538e-050.002243InformativeInherited
Biological Process (BP)nitrogen compound transport0.0020330.5527InformativeInherited
Biological Process (BP)defense response0.083940.278InformativeInherited
Biological Process (BP)single-organism behavior0.0022991.873e-06InformativeInherited
Biological Process (BP)amino acid transport1.308e-103.154e-09Highly InformativeDirect
Molecular Function (MF)hydrolase activity0.060411Least InformativeInherited
Molecular Function (MF)transporter activity3.358e-070Moderately InformativeDirect
Molecular Function (MF)receptor activity1.817e-050InformativeDirect
Molecular Function (MF)molecular transducer activity3.662e-050InformativeDirect
Molecular Function (MF)nucleoside-triphosphatase activity3.452e-060.6656InformativeInherited
Molecular Function (MF)active transmembrane transporter activity0.032961InformativeInherited
Molecular Function (MF)anion transmembrane transporter activity0.012311InformativeInherited
Molecular Function (MF)amino acid transmembrane transporter activity5.574e-111.327e-08Highly InformativeDirect
Cellular Component (CC)protein complex0.017620Least InformativeInherited
Cellular Component (CC)cytoplasmic part11Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle11Least InformativeInherited
Cellular Component (CC)membrane0.0061240Least InformativeInherited
Cellular Component (CC)plasma membrane part0.00083960Moderately InformativeDirect
Cellular Component (CC)cell projection0.0018420Moderately InformativeInherited
Cellular Component (CC)vesicle0.08661.541e-07Moderately InformativeInherited
Cellular Component (CC)intrinsic to membrane0.0043910Moderately InformativeInherited
Cellular Component (CC)synapse part7.948e-090InformativeDirect
Cellular Component (CC)intrinsic to plasma membrane7.676e-060InformativeDirect
Cellular Component (CC)coated vesicle0.0001792.145e-11InformativeDirect
Cellular Component (CC)integral to membrane0.00027650InformativeDirect
Cellular Component (CC)cell surface0.0007730.000261InformativeDirect
Cellular Component (CC)neuron projection0.067561.464e-08InformativeInherited
Cellular Component (CC)receptor complex3.731e-140Highly InformativeDirect
Cellular Component (CC)ion channel complex1.74e-130Highly InformativeDirect
Cellular Component (CC)synaptic membrane1.306e-060Highly InformativeDirect
Cellular Component (CC)integral to plasma membrane4.684e-060Highly InformativeDirect
Cellular Component (CC)neuron spine6.017e-060Highly InformativeDirect
Cellular Component (CC)clathrin-coated vesicle8.432e-050Highly InformativeDirect
Cellular Component (CC)axon part0.0029770.002332Highly InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 5.604e-05 Least Informative Direct
Biological Process (BP) single-organism cellular process 0 Least Informative Direct
Biological Process (BP) multicellular organismal process 0 Least Informative Direct
Biological Process (BP) regulation of cellular process 2.642e-07 Least Informative Direct
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) system process 0 Moderately Informative Direct
Biological Process (BP) ion transport 0 Moderately Informative Direct
Biological Process (BP) signal transduction 0 Moderately Informative Direct
Biological Process (BP) organonitrogen compound biosynthetic process 0.0004589 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) carbohydrate derivative metabolic process 0.07982 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.285 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) homeostatic process 0.2752 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.4268 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.05565 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) nucleobase-containing small molecule metabolic process 0.003685 Moderately Informative Inherited
Biological Process (BP) regulation of programmed cell death 1 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) reproduction 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.05573 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) regulation of catalytic activity 0.3694 Moderately Informative Inherited
Biological Process (BP) regulation of phosphate metabolic process 0.2391 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.5272 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 0.9529 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 0.4336 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.6772 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 0.4563 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.4192 Moderately Informative Inherited
Biological Process (BP) organic substance transport 1 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.00324 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 0.003663 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 0.00383 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 0.02964 Moderately Informative Inherited
Biological Process (BP) transmission of nerve impulse 0 Informative Direct
Biological Process (BP) transmembrane transport 0 Informative Direct
Biological Process (BP) single-organism behavior 1.873e-06 Informative Direct
Biological Process (BP) cell-cell signaling 0 Informative Direct
Biological Process (BP) regulation of system process 0 Informative Direct
Biological Process (BP) purine-containing compound biosynthetic process 0 Informative Direct
Biological Process (BP) ribose phosphate biosynthetic process 0 Informative Direct
Biological Process (BP) cation homeostasis 0 Informative Direct
Biological Process (BP) response to organonitrogen compound 1.931e-15 Informative Direct
Biological Process (BP) nucleotide biosynthetic process 2.112e-14 Informative Direct
Biological Process (BP) cellular response to nitrogen compound 8.318e-09 Informative Direct
Biological Process (BP) regulation of ion transport 1.294e-08 Informative Direct
Biological Process (BP) positive regulation of transport 1.997e-05 Informative Direct
Biological Process (BP) positive regulation of multicellular organismal process 5.696e-05 Informative Direct
Biological Process (BP) regulation of secretion 6.193e-05 Informative Direct
Biological Process (BP) response to light stimulus 7.334e-05 Informative Direct
Biological Process (BP) regulation of response to external stimulus 8.507e-05 Informative Direct
Biological Process (BP) cellular response to oxygen-containing compound 8.897e-05 Informative Direct
Biological Process (BP) regulation of purine nucleotide metabolic process 0.0001078 Informative Direct
Biological Process (BP) cellular response to endogenous stimulus 0.7572 Informative Inherited
Biological Process (BP) metal ion transport 0.1564 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 1 Informative Inherited
Biological Process (BP) regulation of cellular component biogenesis 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 0.01663 Informative Inherited
Biological Process (BP) negative regulation of cell communication 0.01793 Informative Inherited
Biological Process (BP) regulation of nervous system development 0.1381 Informative Inherited
Biological Process (BP) generation of neurons 0.1657 Informative Inherited
Biological Process (BP) regulation of cell development 0.2736 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 0.7783 Informative Inherited
Biological Process (BP) organic acid transport 0.002243 Informative Inherited
Biological Process (BP) anion transport 1 Informative Inherited
Biological Process (BP) purine ribonucleotide metabolic process 0.3692 Informative Inherited
Biological Process (BP) negative regulation of cell death 0.1493 Informative Inherited
Biological Process (BP) regulation of body fluid levels 0.9609 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.3255 Informative Inherited
Biological Process (BP) regulation of organelle organization 1 Informative Inherited
Biological Process (BP) negative regulation of catalytic activity 0.003466 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 0.09783 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 0.1674 Informative Inherited
Biological Process (BP) central nervous system development 0.1329 Informative Inherited
Biological Process (BP) intracellular signal transduction 1 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.1803 Informative Inherited
Biological Process (BP) single organism reproductive process 1 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 1 Informative Inherited
Biological Process (BP) nitrogen compound transport 0.5527 Informative Inherited
Biological Process (BP) defense response 0.278 Informative Inherited
Biological Process (BP) amino acid transport 3.154e-09 Highly Informative Direct
Biological Process (BP) G-protein coupled receptor signaling pathway 1.549e-05 Highly Informative Direct
Biological Process (BP) calcium ion transport 0 Highly Informative Direct
Biological Process (BP) regulation of synaptic transmission 0 Highly Informative Direct
Biological Process (BP) purine ribonucleotide biosynthetic process 0 Highly Informative Direct
Biological Process (BP) adult behavior 0 Highly Informative Direct
Biological Process (BP) response to acid 0 Highly Informative Direct
Biological Process (BP) regulation of membrane potential 0 Highly Informative Direct
Biological Process (BP) regulation of neuron apoptotic process 2.323e-13 Highly Informative Direct
Biological Process (BP) ion transmembrane transport 7.957e-10 Highly Informative Direct
Biological Process (BP) negative regulation of response to external stimulus 9.182e-10 Highly Informative Direct
Biological Process (BP) positive regulation of ion transport 7.232e-09 Highly Informative Direct
Biological Process (BP) regulation of cyclic nucleotide metabolic process 9.92e-09 Highly Informative Direct
Biological Process (BP) negative regulation of multicellular organismal process 1.75e-07 Highly Informative Direct
Biological Process (BP) regulation of calcium ion transport 9.554e-06 Highly Informative Direct
Biological Process (BP) response to toxic substance 2.677e-05 Highly Informative Direct
Biological Process (BP) telencephalon development 4.776e-05 Highly Informative Direct
Biological Process (BP) negative regulation of neuron death 7.906e-05 Highly Informative Direct
Biological Process (BP) response to ethanol 8.501e-05 Highly Informative Direct
Biological Process (BP) detection of light stimulus 0.01022 Highly Informative Inherited
Biological Process (BP) regulation of neuron projection development 0.001287 Highly Informative Inherited
Biological Process (BP) regulation of cell morphogenesis involved in differentiation 0.007197 Highly Informative Inherited
Biological Process (BP) regulation of transmembrane transport 0.003309 Highly Informative Inherited
Biological Process (BP) regulation of vesicle-mediated transport 0.9066 Highly Informative Inherited
Biological Process (BP) developmental maturation 0.04503 Highly Informative Inherited
Biological Process (BP) response to alkaloid 0.001131 Highly Informative Inherited
Biological Process (BP) positive regulation of secretion 0.009975 Highly Informative Inherited
Biological Process (BP) sensory perception 0.9687 Highly Informative Inherited
Biological Process (BP) multi-organism behavior 0.006338 Highly Informative Inherited
Biological Process (BP) neuromuscular process 0.1598 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transporter activity 0 Moderately Informative Direct
Molecular Function (MF) lyase activity 0 Moderately Informative Direct
Molecular Function (MF) anion binding 0.05371 Moderately Informative Inherited
Molecular Function (MF) cation binding 0.5677 Moderately Informative Inherited
Molecular Function (MF) receptor activity 0 Informative Direct
Molecular Function (MF) molecular transducer activity 0 Informative Direct
Molecular Function (MF) carboxylic acid binding 0 Informative Direct
Molecular Function (MF) metal ion transmembrane transporter activity 0.0006105 Informative Direct
Molecular Function (MF) inorganic cation transmembrane transporter activity 0.5993 Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.6656 Informative Inherited
Molecular Function (MF) active transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) anion transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) amino acid transmembrane transporter activity 1.327e-08 Highly Informative Direct
Molecular Function (MF) ion gated channel activity 0 Highly Informative Direct
Molecular Function (MF) amino acid binding 0 Highly Informative Direct
Molecular Function (MF) ion channel activity 0 Highly Informative Direct
Molecular Function (MF) channel regulator activity 1.115e-08 Highly Informative Direct
Molecular Function (MF) hormone binding 0.0002146 Highly Informative Direct
Molecular Function (MF) G-protein coupled receptor activity 1 Highly Informative Inherited
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) protein complex 0 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.06506 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) plasma membrane part 0 Moderately Informative Direct
Cellular Component (CC) cell projection 0 Moderately Informative Direct
Cellular Component (CC) intrinsic to membrane 0 Moderately Informative Direct
Cellular Component (CC) endoplasmic reticulum 1.591e-07 Moderately Informative Direct
Cellular Component (CC) vesicle 1.541e-07 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 1.459e-10 Moderately Informative Direct
Cellular Component (CC) synapse part 0 Informative Direct
Cellular Component (CC) intrinsic to plasma membrane 0 Informative Direct
Cellular Component (CC) coated vesicle 2.145e-11 Informative Direct
Cellular Component (CC) integral to membrane 0 Informative Direct
Cellular Component (CC) cell surface 0.000261 Informative Direct
Cellular Component (CC) neuron projection 1.464e-08 Informative Direct
Cellular Component (CC) external encapsulating structure 0.2492 Informative Inherited
Cellular Component (CC) receptor complex 0 Highly Informative Direct
Cellular Component (CC) ion channel complex 0 Highly Informative Direct
Cellular Component (CC) synaptic membrane 0 Highly Informative Direct
Cellular Component (CC) integral to plasma membrane 0 Highly Informative Direct
Cellular Component (CC) neuron spine 0 Highly Informative Direct
Cellular Component (CC) clathrin-coated vesicle 0 Highly Informative Direct
Cellular Component (CC) dendrite 7.332e-12 Highly Informative Direct
Cellular Component (CC) cell body 0 Highly Informative Direct
Cellular Component (CC) cell envelope 5.883e-05 Highly Informative Direct
Cellular Component (CC) periplasmic space 0.0003166 Highly Informative Direct
Cellular Component (CC) external encapsulating structure part 0.0003217 Highly Informative Direct
Cellular Component (CC) axon part 0.002332 Highly Informative Inherited
Cellular Component (CC) cilium 0.01773 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited
Enzyme Commission (EC)Guanylate cyclase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.0003154Least InformativeDirect
Disease Ontology (DO)disease of mental health2.052e-08Moderately InformativeDirect
Disease Ontology (DO)brain disease0.04502Moderately InformativeInherited
Disease Ontology (DO)neurodegenerative disease0.6519Moderately InformativeInherited
Disease Ontology (DO)schizophrenia3.662e-10InformativeDirect
Disease Ontology (DO)motor neuron disease0.0001036InformativeDirect
Disease Ontology (DO)focal epilepsy0.004213InformativeInherited
Disease Ontology (DO)developmental disorder of mental health0.2856InformativeInherited
Disease Ontology (DO)temporal lobe epilepsy7.75e-10Highly InformativeDirect
Disease Ontology (DO)amyotrophic lateral sclerosis2.167e-07Highly InformativeDirect
Disease Ontology (DO)autistic disorder0.0001374Highly InformativeDirect
Disease Ontology (DO)bipolar disorder0.0004361Highly InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype7.316e-06Least InformativeDirect
Mammalian Phenotype (MP)abnormal nervous system physiology0.002375Moderately InformativeInherited
Mammalian Phenotype (MP)integument phenotype0.07746Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavioral response to xenobiotic8.82e-05InformativeDirect
Mammalian Phenotype (MP)abnormal touch/ nociception0.0009964InformativeDirect
Mammalian Phenotype (MP)abnormal learning/memory/conditioning0.001015InformativeInherited
Mammalian Phenotype (MP)abnormal CNS synaptic transmission0.1316InformativeInherited
Mammalian Phenotype (MP)abnormal glutamate-mediated receptor currents0.0002146Highly InformativeDirect
Mammalian Phenotype (MP)taste/olfaction phenotype0.006808Highly InformativeInherited
Mammalian Phenotype (MP)abnormal synaptic depression0.164Highly InformativeInherited
Mammalian Phenotype (MP)abnormal avoidance learning behavior0.592Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant2.67e-08Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.6948Least InformativeInherited
Worm Phenotype (WP)chemical response variant0.0004527Moderately InformativeDirect
Worm Phenotype (WP)chemotaxis variant0InformativeDirect
Worm Phenotype (WP)electrophysiology variant1.192e-05InformativeDirect
Worm Phenotype (WP)lipid metabolism variant0.001162InformativeInherited
Worm Phenotype (WP)metabolic pathway variant1.82e-06Highly InformativeDirect
Worm Phenotype (WP)carbon dioxide avoidance variant6.777e-06Highly InformativeDirect
Worm Phenotype (WP)pharyngeal pumping variant8.007e-06Highly InformativeDirect
Worm Phenotype (WP)isothermal tracking behavior variant2.023e-05Highly InformativeDirect
Worm Phenotype (WP)aqueous positive chemotaxis defective0.009618Highly InformativeInherited
Worm Phenotype (WP)odorant positive chemotaxis variant0.9973Highly InformativeInherited
Worm Phenotype (WP)negative chemotaxis variant1Highly InformativeInherited

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system0Least InformativeDirect
Fly Anatomy (FA)cell0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)peripheral nervous system0Moderately InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processIon transport0Moderately InformativeDirect
Biological processTranscription regulation0Moderately InformativeDirect
Biological processCarbohydrate metabolism1Moderately InformativeInherited
Biological processPurine biosynthesis0InformativeDirect
Biological processSensory transduction0InformativeDirect
Biological processCell shape2.01e-10InformativeDirect
Biological processChemotaxis4.632e-07InformativeDirect
Biological processAmino-acid transport0Highly InformativeDirect
Biological processPeptidoglycan synthesis8.011e-11Highly InformativeDirect
Biological processOsteogenesis7.926e-08Highly InformativeDirect
Biological processSugar transport0.0007934Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentCell junction0Moderately InformativeDirect
Cellular componentCell projection1.745e-11Moderately InformativeDirect
Cellular componentCell membrane1.931e-09Moderately InformativeDirect
Cellular componentEndoplasmic reticulum6.928e-05Moderately InformativeDirect
Cellular componentPeriplasm0InformativeDirect
Cellular componentSynapse0InformativeDirect
Cellular componentCell outer membrane6.19e-14InformativeDirect
Cellular componentPostsynaptic cell membrane0Highly InformativeDirect
Coding sequence diversityRNA editing6.209e-07Moderately InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane0Least InformativeDirect
Molecular functionDNA-binding0Least InformativeDirect
Molecular functionNucleotide-binding1Least InformativeInherited
Molecular functionCalcium2.29e-15Moderately InformativeDirect
Molecular functionGTP-binding0.0004754InformativeDirect
Molecular functionChloride2.684e-05Highly InformativeDirect
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationRepressor0Moderately InformativeDirect
Post-translational modificationIon channel0InformativeDirect
Post-translational modificationTransducer0InformativeDirect
Post-translational modificationG-protein coupled receptor0Highly InformativeDirect
Post-translational modificationLigand-gated ion channel0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationDisulfide bond0.0003915Least InformativeDirect
Post-translational modificationPalmitate9.085e-16Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 18 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Periplasmic binding protein-like I domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 18 hidden Markov models representing the Periplasmic binding protein-like I superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]