SUPERFAMILY 1.75 HMM library and genome assignments server


Periplasmic binding protein-like I superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Periplasmic binding protein-like I [ 53821]
Superfamily:   Periplasmic binding protein-like I [ 53822]
Families:   L-arabinose binding protein-like [ 53823] (16)


Superfamily statistics
Genomes (2,625) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 45,729 226,237 47
Proteins 45,126 225,457 47


Functional annotation
General category Regulation
Detailed category DNA-binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)localization9.818e-050.0001474Least InformativeDirect
Biological Process (BP)multicellular organismal process0.21450Least InformativeInherited
Biological Process (BP)single-organism cellular process0.072580Least InformativeInherited
Biological Process (BP)response to stimulus0.87080Least InformativeInherited
Biological Process (BP)system process0.00083350Moderately InformativeDirect
Biological Process (BP)ion transport0.031540Moderately InformativeInherited
Biological Process (BP)organic substance transport5.896e-051Moderately InformativeInherited
Biological Process (BP)anion transport4.466e-071InformativeInherited
Biological Process (BP)organic acid transport2.598e-050.001707InformativeInherited
Biological Process (BP)nitrogen compound transport0.0018620.5394InformativeInherited
Biological Process (BP)defense response0.087470.3239InformativeInherited
Biological Process (BP)single-organism behavior0.0025342.477e-06InformativeInherited
Biological Process (BP)amino acid transport8.466e-112.401e-09Highly InformativeDirect
Molecular Function (MF)hydrolase activity0.058611Least InformativeInherited
Molecular Function (MF)transporter activity3.176e-070Moderately InformativeDirect
Molecular Function (MF)hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1.035e-050.7905Moderately InformativeInherited
Molecular Function (MF)receptor activity2.152e-050InformativeDirect
Molecular Function (MF)molecular transducer activity4.175e-050InformativeDirect
Molecular Function (MF)nucleoside-triphosphatase activity2.843e-060.6753InformativeInherited
Molecular Function (MF)active transmembrane transporter activity0.029041InformativeInherited
Molecular Function (MF)hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances3.956e-061InformativeInherited
Molecular Function (MF)anion transmembrane transporter activity0.010081InformativeInherited
Molecular Function (MF)amino acid transmembrane transporter activity3.185e-119.934e-09Highly InformativeDirect
Cellular Component (CC)protein complex0.018080Least InformativeInherited
Cellular Component (CC)cytoplasmic part11Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle11Least InformativeInherited
Cellular Component (CC)membrane0.010350Least InformativeInherited
Cellular Component (CC)cell projection0.0021330Moderately InformativeInherited
Cellular Component (CC)vesicle0.16863.467e-06Moderately InformativeInherited
Cellular Component (CC)plasma membrane0.026440Moderately InformativeInherited
Cellular Component (CC)intrinsic to membrane0.0047920Moderately InformativeInherited
Cellular Component (CC)synapse part7.451e-120InformativeDirect
Cellular Component (CC)intrinsic to plasma membrane7.079e-060InformativeDirect
Cellular Component (CC)coated vesicle0.00020632.661e-11InformativeDirect
Cellular Component (CC)integral to membrane0.00028490InformativeDirect
Cellular Component (CC)cell surface0.0008680.0002983InformativeDirect
Cellular Component (CC)neuron projection0.07271.802e-09InformativeInherited
Cellular Component (CC)receptor complex3.236e-140Highly InformativeDirect
Cellular Component (CC)ion channel complex2.929e-130Highly InformativeDirect
Cellular Component (CC)postsynaptic membrane2.016e-120.0002929Highly InformativeDirect
Cellular Component (CC)integral to plasma membrane4.364e-060Highly InformativeDirect
Cellular Component (CC)clathrin-coated vesicle0.00010140Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0.0001474 Least Informative Direct
Biological Process (BP) single-organism cellular process 0 Least Informative Direct
Biological Process (BP) multicellular organismal process 0 Least Informative Direct
Biological Process (BP) regulation of cellular process 3.515e-06 Least Informative Direct
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) system process 0 Moderately Informative Direct
Biological Process (BP) ion transport 0 Moderately Informative Direct
Biological Process (BP) signal transduction 0 Moderately Informative Direct
Biological Process (BP) regulation of biological quality 4.777e-05 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) carbohydrate derivative metabolic process 0.09022 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.3375 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.4008 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.09461 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) nucleobase-containing small molecule metabolic process 0.009069 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) reproduction 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.02676 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) regulation of catalytic activity 0.3842 Moderately Informative Inherited
Biological Process (BP) regulation of phosphate metabolic process 0.2605 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.6038 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 0.5741 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.8497 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 0.3994 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.3789 Moderately Informative Inherited
Biological Process (BP) organic substance transport 1 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 0.001356 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.006913 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 0.007253 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 0.007273 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 0.04816 Moderately Informative Inherited
Biological Process (BP) transmembrane transport 0 Informative Direct
Biological Process (BP) single-organism behavior 2.477e-06 Informative Direct
Biological Process (BP) synaptic transmission 0 Informative Direct
Biological Process (BP) regulation of system process 0 Informative Direct
Biological Process (BP) purine-containing compound biosynthetic process 0 Informative Direct
Biological Process (BP) ribose phosphate biosynthetic process 0 Informative Direct
Biological Process (BP) cation homeostasis 0 Informative Direct
Biological Process (BP) response to organonitrogen compound 3.741e-15 Informative Direct
Biological Process (BP) nucleotide biosynthetic process 3.899e-13 Informative Direct
Biological Process (BP) cellular response to nitrogen compound 8.58e-09 Informative Direct
Biological Process (BP) regulation of ion transport 1.981e-08 Informative Direct
Biological Process (BP) regulation of secretion 6.235e-05 Informative Direct
Biological Process (BP) positive regulation of transport 6.4e-05 Informative Direct
Biological Process (BP) response to light stimulus 8.666e-05 Informative Direct
Biological Process (BP) cellular response to oxygen-containing compound 0.0001076 Informative Direct
Biological Process (BP) regulation of response to external stimulus 0.00013 Informative Direct
Biological Process (BP) regulation of purine nucleotide metabolic process 0.0001471 Informative Direct
Biological Process (BP) positive regulation of multicellular organismal process 0.0001736 Informative Direct
Biological Process (BP) cellular response to endogenous stimulus 0.7122 Informative Inherited
Biological Process (BP) metal ion transport 0.1571 Informative Inherited
Biological Process (BP) multi-multicellular organism process 0.1699 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 1 Informative Inherited
Biological Process (BP) regulation of cellular component biogenesis 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 0.03029 Informative Inherited
Biological Process (BP) negative regulation of cell communication 0.03433 Informative Inherited
Biological Process (BP) regulation of nervous system development 0.1622 Informative Inherited
Biological Process (BP) regulation of cell development 0.04741 Informative Inherited
Biological Process (BP) generation of neurons 0.1985 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 0.7997 Informative Inherited
Biological Process (BP) organic acid transport 0.001707 Informative Inherited
Biological Process (BP) anion transport 1 Informative Inherited
Biological Process (BP) purine ribonucleotide metabolic process 0.12 Informative Inherited
Biological Process (BP) negative regulation of cell death 0.2225 Informative Inherited
Biological Process (BP) regulation of apoptotic process 0.02206 Informative Inherited
Biological Process (BP) regulation of body fluid levels 0.9646 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.4415 Informative Inherited
Biological Process (BP) regulation of vesicle-mediated transport 0.9456 Informative Inherited
Biological Process (BP) regulation of organelle organization 1 Informative Inherited
Biological Process (BP) negative regulation of catalytic activity 0.003771 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 0.1171 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 0.1964 Informative Inherited
Biological Process (BP) central nervous system development 0.1642 Informative Inherited
Biological Process (BP) intracellular signal transduction 1 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.1841 Informative Inherited
Biological Process (BP) single organism reproductive process 0.9791 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 1 Informative Inherited
Biological Process (BP) nitrogen compound transport 0.5394 Informative Inherited
Biological Process (BP) defense response 0.3239 Informative Inherited
Biological Process (BP) amino acid transport 2.401e-09 Highly Informative Direct
Biological Process (BP) calcium ion transport 0 Highly Informative Direct
Biological Process (BP) regulation of synaptic transmission 0 Highly Informative Direct
Biological Process (BP) purine ribonucleotide biosynthetic process 0 Highly Informative Direct
Biological Process (BP) adult behavior 0 Highly Informative Direct
Biological Process (BP) response to amino acid stimulus 0 Highly Informative Direct
Biological Process (BP) regulation of membrane potential 0 Highly Informative Direct
Biological Process (BP) regulation of neuron apoptotic process 3.263e-13 Highly Informative Direct
Biological Process (BP) regulation of amine transport 3.59e-13 Highly Informative Direct
Biological Process (BP) negative regulation of response to external stimulus 9.335e-10 Highly Informative Direct
Biological Process (BP) regulation of cyclic nucleotide metabolic process 4.974e-09 Highly Informative Direct
Biological Process (BP) positive regulation of ion transport 5.73e-09 Highly Informative Direct
Biological Process (BP) negative regulation of multicellular organismal process 3.028e-07 Highly Informative Direct
Biological Process (BP) regulation of calcium ion transport 1.883e-05 Highly Informative Direct
Biological Process (BP) learning or memory 1.965e-05 Highly Informative Direct
Biological Process (BP) response to toxic substance 4.629e-05 Highly Informative Direct
Biological Process (BP) telencephalon development 6.175e-05 Highly Informative Direct
Biological Process (BP) negative regulation of neuron death 0.0001169 Highly Informative Direct
Biological Process (BP) G-protein coupled receptor signaling pathway 0.0002457 Highly Informative Direct
Biological Process (BP) detection of light stimulus 0.009092 Highly Informative Inherited
Biological Process (BP) regulation of neuron projection development 0.001622 Highly Informative Inherited
Biological Process (BP) regulation of cell morphogenesis involved in differentiation 0.01329 Highly Informative Inherited
Biological Process (BP) response to alcohol 0.004701 Highly Informative Inherited
Biological Process (BP) negative regulation of apoptotic process 0.09875 Highly Informative Inherited
Biological Process (BP) regulation of transmembrane transport 0.007022 Highly Informative Inherited
Biological Process (BP) regulation of exocytosis 0.08441 Highly Informative Inherited
Biological Process (BP) developmental maturation 0.04456 Highly Informative Inherited
Biological Process (BP) response to alkaloid 0.001563 Highly Informative Inherited
Biological Process (BP) sensory perception 0.9086 Highly Informative Inherited
Biological Process (BP) multi-organism behavior 0.005062 Highly Informative Inherited
Biological Process (BP) neuromuscular process 0.2015 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transporter activity 0 Moderately Informative Direct
Molecular Function (MF) lyase activity 0 Moderately Informative Direct
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.7905 Moderately Informative Inherited
Molecular Function (MF) anion binding 0.04373 Moderately Informative Inherited
Molecular Function (MF) cation binding 0.6022 Moderately Informative Inherited
Molecular Function (MF) receptor activity 0 Informative Direct
Molecular Function (MF) molecular transducer activity 0 Informative Direct
Molecular Function (MF) carboxylic acid binding 0 Informative Direct
Molecular Function (MF) metal ion transmembrane transporter activity 0.0007464 Informative Direct
Molecular Function (MF) inorganic cation transmembrane transporter activity 0.6178 Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.6753 Informative Inherited
Molecular Function (MF) active transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 1 Informative Inherited
Molecular Function (MF) anion transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) amino acid transmembrane transporter activity 9.934e-09 Highly Informative Direct
Molecular Function (MF) calcium ion transmembrane transporter activity 0 Highly Informative Direct
Molecular Function (MF) ion gated channel activity 0 Highly Informative Direct
Molecular Function (MF) amino acid binding 0 Highly Informative Direct
Molecular Function (MF) channel regulator activity 3.294e-08 Highly Informative Direct
Molecular Function (MF) hormone binding 0.0002691 Highly Informative Direct
Molecular Function (MF) protein domain specific binding 0.0005147 Highly Informative Direct
Molecular Function (MF) calcium ion binding 0.0009389 Highly Informative Direct
Molecular Function (MF) cation channel activity 1 Highly Informative Inherited
Molecular Function (MF) G-protein coupled receptor activity 1 Highly Informative Inherited
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) protein complex 0 Least Informative Direct
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.402 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) cell projection 0 Moderately Informative Direct
Cellular Component (CC) intrinsic to membrane 0 Moderately Informative Direct
Cellular Component (CC) plasma membrane 0 Moderately Informative Direct
Cellular Component (CC) endoplasmic reticulum 2.838e-07 Moderately Informative Direct
Cellular Component (CC) vesicle 3.467e-06 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 2.016e-09 Moderately Informative Direct
Cellular Component (CC) synapse part 0 Informative Direct
Cellular Component (CC) intrinsic to plasma membrane 0 Informative Direct
Cellular Component (CC) coated vesicle 2.661e-11 Informative Direct
Cellular Component (CC) integral to membrane 0 Informative Direct
Cellular Component (CC) cell surface 0.0002983 Informative Direct
Cellular Component (CC) neuron projection 1.802e-09 Informative Direct
Cellular Component (CC) external encapsulating structure 0.5076 Informative Inherited
Cellular Component (CC) receptor complex 0 Highly Informative Direct
Cellular Component (CC) ion channel complex 0 Highly Informative Direct
Cellular Component (CC) postsynaptic membrane 0.0002929 Highly Informative Direct
Cellular Component (CC) integral to plasma membrane 0 Highly Informative Direct
Cellular Component (CC) clathrin-coated vesicle 0 Highly Informative Direct
Cellular Component (CC) dendrite 2.069e-12 Highly Informative Direct
Cellular Component (CC) cell body 0 Highly Informative Direct
Cellular Component (CC) cell envelope 5.66e-05 Highly Informative Direct
Cellular Component (CC) external encapsulating structure part 0.0002521 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited
Enzyme Commission (EC)Guanylate cyclase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.0002321Least InformativeDirect
Disease Ontology (DO)disease of mental health2.495e-08Moderately InformativeDirect
Disease Ontology (DO)neurodegenerative disease0.6962Moderately InformativeInherited
Disease Ontology (DO)schizophrenia4.179e-10InformativeDirect
Disease Ontology (DO)motor neuron disease9.518e-05InformativeDirect
Disease Ontology (DO)developmental disorder of mental health0.2817InformativeInherited
Disease Ontology (DO)temporal lobe epilepsy7.924e-10Highly InformativeDirect
Disease Ontology (DO)amyotrophic lateral sclerosis2.134e-07Highly InformativeDirect
Disease Ontology (DO)autistic disorder0.0001348Highly InformativeDirect
Disease Ontology (DO)bipolar disorder0.0004552Highly InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype1.41e-06Least InformativeDirect
Mammalian Phenotype (MP)abnormal nervous system physiology0.00612Moderately InformativeInherited
Mammalian Phenotype (MP)integument phenotype0.07531Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavioral response to xenobiotic8.552e-05InformativeDirect
Mammalian Phenotype (MP)abnormal touch/ nociception0.0009644InformativeDirect
Mammalian Phenotype (MP)abnormal learning/memory/conditioning0.0009711InformativeDirect
Mammalian Phenotype (MP)seizures0.00221InformativeInherited
Mammalian Phenotype (MP)abnormal consumption behavior0.4056InformativeInherited
Mammalian Phenotype (MP)decreased alcohol consumption3.914e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal glutamate-mediated receptor currents0.0001759Highly InformativeDirect
Mammalian Phenotype (MP)absence seizures0.0009757Highly InformativeDirect
Mammalian Phenotype (MP)taste/olfaction phenotype0.007094Highly InformativeInherited
Mammalian Phenotype (MP)abnormal synaptic depression0.1669Highly InformativeInherited
Mammalian Phenotype (MP)abnormal avoidance learning behavior0.59Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant2.67e-08Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.6948Least InformativeInherited
Worm Phenotype (WP)chemical response variant0.0004527Moderately InformativeDirect
Worm Phenotype (WP)chemotaxis variant0InformativeDirect
Worm Phenotype (WP)electrophysiology variant1.192e-05InformativeDirect
Worm Phenotype (WP)lipid metabolism variant0.001162InformativeInherited
Worm Phenotype (WP)metabolic pathway variant1.82e-06Highly InformativeDirect
Worm Phenotype (WP)carbon dioxide avoidance variant6.777e-06Highly InformativeDirect
Worm Phenotype (WP)pharyngeal pumping variant8.007e-06Highly InformativeDirect
Worm Phenotype (WP)isothermal tracking behavior variant2.023e-05Highly InformativeDirect
Worm Phenotype (WP)aqueous positive chemotaxis defective0.009618Highly InformativeInherited
Worm Phenotype (WP)odorant positive chemotaxis variant0.9973Highly InformativeInherited
Worm Phenotype (WP)negative chemotaxis variant1Highly InformativeInherited

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)peripheral nervous system0Moderately InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processIon transport0Moderately InformativeDirect
Biological processTranscription regulation0Moderately InformativeDirect
Biological processCarbohydrate metabolism1Moderately InformativeInherited
Biological processPurine biosynthesis0InformativeDirect
Biological processSensory transduction0InformativeDirect
Biological processCell shape1.915e-10InformativeDirect
Biological processChemotaxis6.876e-08InformativeDirect
Biological processAmino-acid transport0Highly InformativeDirect
Biological processPeptidoglycan synthesis7.625e-11Highly InformativeDirect
Biological processOsteogenesis7.791e-08Highly InformativeDirect
Biological processSugar transport0.0007771Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentCell junction0Moderately InformativeDirect
Cellular componentCell projection2.561e-11Moderately InformativeDirect
Cellular componentCell membrane2.056e-09Moderately InformativeDirect
Cellular componentEndoplasmic reticulum8.662e-05Moderately InformativeDirect
Cellular componentPeriplasm0InformativeDirect
Cellular componentSynapse0InformativeDirect
Cellular componentCell outer membrane7.368e-14InformativeDirect
Cellular componentPostsynaptic cell membrane0Highly InformativeDirect
Coding sequence diversityRNA editing5.868e-07Moderately InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane0Least InformativeDirect
Molecular functionNucleotide-binding1Least InformativeInherited
Molecular functionDNA-binding0Moderately InformativeDirect
Molecular functionCalcium3.661e-15Moderately InformativeDirect
Molecular functionGTP-binding0.0004731InformativeDirect
Molecular functionChloride2.702e-05Highly InformativeDirect
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationRepressor0Moderately InformativeDirect
Post-translational modificationIon channel0InformativeDirect
Post-translational modificationTransducer0InformativeDirect
Post-translational modificationG-protein coupled receptor0Highly InformativeDirect
Post-translational modificationLigand-gated ion channel0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationDisulfide bond0.0003762Least InformativeDirect
Post-translational modificationPalmitate9.083e-16Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 18 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Periplasmic binding protein-like I domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 18 hidden Markov models representing the Periplasmic binding protein-like I superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]