SUPERFAMILY 1.75 HMM library and genome assignments server


ALDH-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   ALDH-like [ 53719]
Superfamily:   ALDH-like [ 53720] (2)
Families:   ALDH-like [ 53721] (5)
  L-histidinol dehydrogenase HisD [ 69602]


Superfamily statistics
Genomes (3,019) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 34,956 176,906 20
Proteins 34,496 176,078 20


Functional annotation
General category Metabolism
Detailed category Redox

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)single-organism metabolic process00Least InformativeDirect
Biological Process (BP)developmental process0.61751Least InformativeInherited
Biological Process (BP)multicellular organismal process0.93291Least InformativeInherited
Biological Process (BP)cellular component organization or biogenesis11Least InformativeInherited
Biological Process (BP)single-organism cellular process11Least InformativeInherited
Biological Process (BP)response to stimulus0.56911Least InformativeInherited
Biological Process (BP)heterocycle metabolic process11Least InformativeInherited
Biological Process (BP)biosynthetic process0.78950.6532Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.055628.182e-05Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process11Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process11Least InformativeInherited
Biological Process (BP)cellular amino acid metabolic process2.087e-100Moderately InformativeDirect
Biological Process (BP)organic hydroxy compound metabolic process1.234e-071.016e-05Moderately InformativeDirect
Biological Process (BP)organ development0.10151Moderately InformativeInherited
Biological Process (BP)macromolecular complex subunit organization0.4610.422Moderately InformativeInherited
Biological Process (BP)cellular component biogenesis0.84341Moderately InformativeInherited
Biological Process (BP)cellular nitrogen compound biosynthetic process0.86411Moderately InformativeInherited
Biological Process (BP)monocarboxylic acid metabolic process0.012340.5678Moderately InformativeInherited
Biological Process (BP)sulfur compound metabolic process0.81450.3458Moderately InformativeInherited
Biological Process (BP)system process0.1330.8331Moderately InformativeInherited
Biological Process (BP)response to abiotic stimulus0.019660.2298Moderately InformativeInherited
Biological Process (BP)response to oxygen-containing compound0.28350.2226Moderately InformativeInherited
Biological Process (BP)cellular catabolic process0.67620.006042Moderately InformativeInherited
Biological Process (BP)organic substance catabolic process0.33790.001025Moderately InformativeInherited
Biological Process (BP)lipid metabolic process0.17510.3351Moderately InformativeInherited
Biological Process (BP)nucleobase-containing small molecule metabolic process11Moderately InformativeInherited
Biological Process (BP)regulation of biological quality0.012590.8846Moderately InformativeInherited
Biological Process (BP)anatomical structure morphogenesis0.64431Moderately InformativeInherited
Biological Process (BP)tissue development0.21011Moderately InformativeInherited
Biological Process (BP)heterocycle biosynthetic process0.47660.2829Moderately InformativeInherited
Biological Process (BP)organic cyclic compound biosynthetic process0.45850.5075Moderately InformativeInherited
Biological Process (BP)organonitrogen compound biosynthetic process0.47150.02028Moderately InformativeInherited
Biological Process (BP)single-organism biosynthetic process0.0040821.891e-06Moderately InformativeInherited
Biological Process (BP)aromatic compound biosynthetic process0.94041Moderately InformativeInherited
Biological Process (BP)cellular aldehyde metabolic process00InformativeDirect
Biological Process (BP)isoprenoid metabolic process9.5e-154.624e-12InformativeDirect
Biological Process (BP)regulation of hormone levels2.04e-121.502e-10InformativeDirect
Biological Process (BP)protein oligomerization0.0013491.279e-06InformativeInherited
Biological Process (BP)sensory organ development0.00028960.2943InformativeInherited
Biological Process (BP)embryonic organ development9.646e-060.03963InformativeInherited
Biological Process (BP)embryonic morphogenesis0.00011480.2825InformativeInherited
Biological Process (BP)sulfur compound biosynthetic process0.20230.1317InformativeInherited
Biological Process (BP)secondary metabolic process0.5251InformativeInherited
Biological Process (BP)synaptic transmission0.13370.5442InformativeInherited
Biological Process (BP)alcohol metabolic process0.14420.9688InformativeInherited
Biological Process (BP)amide biosynthetic process0.0054230.001554InformativeInherited
Biological Process (BP)response to inorganic substance0.29030.04436InformativeInherited
Biological Process (BP)carboxylic acid catabolic process0.72030.007783InformativeInherited
Biological Process (BP)organonitrogen compound catabolic process0.0027751.8e-05InformativeInherited
Biological Process (BP)cellular biogenic amine metabolic process11InformativeInherited
Biological Process (BP)pyrimidine-containing compound metabolic process0.0060940.003463InformativeInherited
Biological Process (BP)monocarboxylic acid biosynthetic process0.03360.6662InformativeInherited
Biological Process (BP)organ morphogenesis0.0050520.9596InformativeInherited
Biological Process (BP)anatomical structure formation involved in morphogenesis0.071110.9999InformativeInherited
Biological Process (BP)tissue morphogenesis0.0015660.4398InformativeInherited
Biological Process (BP)epithelium development0.032030.8384InformativeInherited
Biological Process (BP)alpha-amino acid biosynthetic process11InformativeInherited
Biological Process (BP)retinoid metabolic process00Highly InformativeDirect
Biological Process (BP)amino-acid betaine metabolic process1.688e-150Highly InformativeDirect
Biological Process (BP)polyamine metabolic process8.561e-050.0001131Highly InformativeDirect
Biological Process (BP)isoprenoid biosynthetic process7.953e-073.082e-05Highly InformativeDirect
Biological Process (BP)glutamine family amino acid catabolic process0.00025071.743e-06Highly InformativeDirect
Biological Process (BP)response to water deprivation0.00011321.168e-05Highly InformativeDirect
Biological Process (BP)primary alcohol metabolic process4.486e-071.367e-11Highly InformativeDirect
Biological Process (BP)cellular hormone metabolic process3.375e-111.416e-11Highly InformativeDirect
Biological Process (BP)protein tetramerization7.409e-051.399e-11Highly InformativeDirect
Biological Process (BP)imidazole-containing compound metabolic process0.00013864.385e-07Highly InformativeDirect
Biological Process (BP)embryonic organ morphogenesis1.084e-070.003163Highly InformativeInherited
Biological Process (BP)eye morphogenesis3.993e-060.006275Highly InformativeInherited
Biological Process (BP)antibiotic biosynthetic process0.0020140.0002106Highly InformativeInherited
Biological Process (BP)secondary metabolite biosynthetic process0.22280.9491Highly InformativeInherited
Biological Process (BP)regulation of neurotransmitter levels0.03070.004183Highly InformativeInherited
Biological Process (BP)nucleobase metabolic process0.00085750.01038Highly InformativeInherited
Biological Process (BP)cellular biogenic amine catabolic process0.18710.04941Highly InformativeInherited
Biological Process (BP)branched-chain amino acid metabolic process0.00072180.1136Highly InformativeInherited
Biological Process (BP)glutamate metabolic process0.072850.0004669Highly InformativeInherited
Biological Process (BP)morphogenesis of embryonic epithelium0.00018890.004062Highly InformativeInherited
Molecular Function (MF)binding11Least InformativeInherited
Molecular Function (MF)oxidoreductase activity00Moderately InformativeDirect
Molecular Function (MF)anion binding0.01330.03384Moderately InformativeInherited
Molecular Function (MF)cofactor binding9.065e-140InformativeDirect
Molecular Function (MF)nucleotide binding0.45730.5234InformativeInherited
Molecular Function (MF)oxidoreductase activity, acting on CH-OH group of donors11InformativeInherited
Molecular Function (MF)oxidoreductase activity, acting on the aldehyde or oxo group of donors00Highly InformativeDirect
Molecular Function (MF)hormone binding1.597e-056.892e-05Highly InformativeDirect
Molecular Function (MF)NAD binding1.259e-102.633e-12Highly InformativeDirect
Molecular Function (MF)oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor0.7350.2219Highly InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle0.2060.4211Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.0010543.002e-09Least InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) nitrogen compound metabolic process 8.182e-05 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0 Least Informative Direct
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.6532 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 0 Moderately Informative Direct
Biological Process (BP) single-organism biosynthetic process 1.891e-06 Moderately Informative Direct
Biological Process (BP) organic hydroxy compound metabolic process 1.016e-05 Moderately Informative Direct
Biological Process (BP) cellular response to chemical stimulus 0.8365 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) macromolecular complex subunit organization 0.422 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 1 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) monocarboxylic acid metabolic process 0.5678 Moderately Informative Inherited
Biological Process (BP) sulfur compound metabolic process 0.3458 Moderately Informative Inherited
Biological Process (BP) system process 0.8331 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 0.2298 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.2226 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.006042 Moderately Informative Inherited
Biological Process (BP) organic substance catabolic process 0.001025 Moderately Informative Inherited
Biological Process (BP) lipid metabolic process 0.3351 Moderately Informative Inherited
Biological Process (BP) nucleobase-containing small molecule metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 0.8846 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) tissue development 1 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 0.2829 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 0.5075 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 0.02028 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cellular aldehyde metabolic process 0 Informative Direct
Biological Process (BP) isoprenoid metabolic process 4.624e-12 Informative Direct
Biological Process (BP) regulation of hormone levels 1.502e-10 Informative Direct
Biological Process (BP) protein oligomerization 1.279e-06 Informative Direct
Biological Process (BP) organonitrogen compound catabolic process 1.8e-05 Informative Direct
Biological Process (BP) sensory organ development 0.2943 Informative Inherited
Biological Process (BP) embryonic organ development 0.03963 Informative Inherited
Biological Process (BP) embryonic morphogenesis 0.2825 Informative Inherited
Biological Process (BP) vesicle-mediated transport 0.7721 Informative Inherited
Biological Process (BP) sulfur compound biosynthetic process 0.1317 Informative Inherited
Biological Process (BP) secondary metabolic process 1 Informative Inherited
Biological Process (BP) synaptic transmission 0.5442 Informative Inherited
Biological Process (BP) alcohol metabolic process 0.9688 Informative Inherited
Biological Process (BP) amide biosynthetic process 0.001554 Informative Inherited
Biological Process (BP) response to inorganic substance 0.04436 Informative Inherited
Biological Process (BP) carboxylic acid catabolic process 0.007783 Informative Inherited
Biological Process (BP) cellular biogenic amine metabolic process 1 Informative Inherited
Biological Process (BP) pyrimidine-containing compound metabolic process 0.003463 Informative Inherited
Biological Process (BP) monocarboxylic acid biosynthetic process 0.6662 Informative Inherited
Biological Process (BP) organ morphogenesis 0.9596 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.9999 Informative Inherited
Biological Process (BP) tissue morphogenesis 0.4398 Informative Inherited
Biological Process (BP) epithelium development 0.8384 Informative Inherited
Biological Process (BP) alpha-amino acid biosynthetic process 1 Informative Inherited
Biological Process (BP) retinoid metabolic process 0 Highly Informative Direct
Biological Process (BP) glutamate metabolic process 0.0004669 Highly Informative Direct
Biological Process (BP) amino-acid betaine metabolic process 0 Highly Informative Direct
Biological Process (BP) polyamine metabolic process 0.0001131 Highly Informative Direct
Biological Process (BP) isoprenoid biosynthetic process 3.082e-05 Highly Informative Direct
Biological Process (BP) glutamine family amino acid catabolic process 1.743e-06 Highly Informative Direct
Biological Process (BP) response to water deprivation 1.168e-05 Highly Informative Direct
Biological Process (BP) antibiotic biosynthetic process 0.0002106 Highly Informative Direct
Biological Process (BP) primary alcohol metabolic process 1.367e-11 Highly Informative Direct
Biological Process (BP) cellular hormone metabolic process 1.416e-11 Highly Informative Direct
Biological Process (BP) protein tetramerization 1.399e-11 Highly Informative Direct
Biological Process (BP) imidazole-containing compound metabolic process 4.385e-07 Highly Informative Direct
Biological Process (BP) protein homooligomerization 0.01168 Highly Informative Inherited
Biological Process (BP) embryonic organ morphogenesis 0.003163 Highly Informative Inherited
Biological Process (BP) eye morphogenesis 0.006275 Highly Informative Inherited
Biological Process (BP) secondary metabolite biosynthetic process 0.9491 Highly Informative Inherited
Biological Process (BP) regulation of neurotransmitter levels 0.004183 Highly Informative Inherited
Biological Process (BP) nucleobase metabolic process 0.01038 Highly Informative Inherited
Biological Process (BP) cellular biogenic amine catabolic process 0.04941 Highly Informative Inherited
Biological Process (BP) branched-chain amino acid metabolic process 0.1136 Highly Informative Inherited
Biological Process (BP) morphogenesis of embryonic epithelium 0.004062 Highly Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transferase activity 1 Least Informative Inherited
Molecular Function (MF) oxidoreductase activity 0 Moderately Informative Direct
Molecular Function (MF) anion binding 0.03384 Moderately Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 1 Moderately Informative Inherited
Molecular Function (MF) cofactor binding 0 Informative Direct
Molecular Function (MF) nucleotide binding 0.5234 Informative Inherited
Molecular Function (MF) oxidoreductase activity, acting on CH-OH group of donors 1 Informative Inherited
Molecular Function (MF) kinase activity 1 Informative Inherited
Molecular Function (MF) oxidoreductase activity, acting on the aldehyde or oxo group of donors 0 Highly Informative Direct
Molecular Function (MF) hormone binding 6.892e-05 Highly Informative Direct
Molecular Function (MF) NAD binding 2.633e-12 Highly Informative Direct
Molecular Function (MF) oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.2219 Highly Informative Inherited
Molecular Function (MF) oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 0.005245 Highly Informative Inherited
Cellular Component (CC) cytoplasmic part 3.002e-09 Least Informative Direct
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.4211 Least Informative Inherited
Cellular Component (CC) mitochondrial part 0.001 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 1 Moderately Informative Inherited
Cellular Component (CC) mitochondrial matrix 0.0002237 Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Acting on the aldehyde or oxo group of donors0Moderately InformativeDirect
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0Moderately InformativeDirect
Enzyme Commission (EC)Acting on the CH-NH group of donors1Moderately InformativeInherited
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0InformativeDirect
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0InformativeDirect
Enzyme Commission (EC)Phosphotransferases with a carboxyl group as accep0.9278InformativeInherited
Enzyme Commission (EC)Histidinol dehydrogenase0Highly InformativeDirect
Enzyme Commission (EC)Formyltetrahydrofolate dehydrogenase1.588e-10Highly InformativeDirect
Enzyme Commission (EC)Glutamate 5-kinase4.896e-05Highly InformativeDirect

Document: EC annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)growth/size/body phenotype0.2883Least InformativeInherited
Mammalian Phenotype (MP)abnormal eye morphology0.001298Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal embryogenesis/ development1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal eye development0.007017InformativeInherited
Mammalian Phenotype (MP)abnormal anterior eye segment morphology0.1812InformativeInherited
Mammalian Phenotype (MP)abnormal lens morphology0.0006208Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)growth variant0Least InformativeDirect
Worm Phenotype (WP)developmental timing variant0Least InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)alimentary system0Least InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Least InformativeDirect
Xenopus ANatomical entity (XAN)intestine0.0002636Moderately InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)collective phyllome structure0Least InformativeDirect
Plant ANatomical entity (PAN)root system0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0.005805Least InformativeInherited
Plant ANatomical entity (PAN)portion of meristem tissue0.008183Least InformativeInherited
Plant ANatomical entity (PAN)whole plant0.03173Least InformativeInherited
Plant ANatomical entity (PAN)inflorescence0.1793Least InformativeInherited
Plant ANatomical entity (PAN)microsporophyll0.7602Least InformativeInherited
Plant ANatomical entity (PAN)inflorescence meristem0.0007226Moderately InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups1Least InformativeInherited
Enzyme Commission (EC)Acting on the CH-OH group of donors1Moderately InformativeInherited
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0InformativeDirect
Enzyme Commission (EC)Acting on the aldehyde or oxo group of donors0InformativeDirect
Enzyme Commission (EC)Acting on the CH-NH group of donors1InformativeInherited
Enzyme Commission (EC)With a quinone or similar compound as acceptor4.476e-05Highly InformativeDirect
Enzyme Commission (EC)Phosphotransferases with a carboxyl group as acceptor0.8945Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processAmino-acid biosynthesis0Moderately InformativeDirect
Biological processAromatic hydrocarbons catabolism0.0009361InformativeDirect
Biological processArginine metabolism0Highly InformativeDirect
Biological processHistidine biosynthesis6.686e-11Highly InformativeDirect
Biological processLuminescence6.497e-09Highly InformativeDirect
Cellular componentCytoplasm5.071e-15Least InformativeDirect
Cellular componentMitochondrion0.0003908Moderately InformativeDirect
DomainTransit peptide1.817e-11Moderately InformativeDirect
Molecular functionZinc2.583e-05Least InformativeDirect
Molecular functionNAD0Moderately InformativeDirect
Molecular functionNADP0InformativeDirect
Molecular functionPotassium0InformativeDirect
Post-translational modificationOxidoreductase0Moderately InformativeDirect
Post-translational modificationOxidation0Highly InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)amino-acid metabolism0Least InformativeDirect
UniPathway (UP)cofactor metabolism1Least InformativeInherited
UniPathway (UP)lipid metabolism1Least InformativeInherited
UniPathway (UP)proteinogenic amino-acid biosynthesis0Moderately InformativeDirect
UniPathway (UP)amine and polyamine metabolism0Moderately InformativeDirect
UniPathway (UP)alcohol metabolism0Moderately InformativeDirect
UniPathway (UP)amino-acid degradation1.792e-15Moderately InformativeDirect
UniPathway (UP)organic acid metabolism5.8e-05Moderately InformativeDirect
UniPathway (UP)fatty acid metabolism1Moderately InformativeInherited
UniPathway (UP)L-arginine degradation0InformativeDirect
UniPathway (UP)choline metabolism0InformativeDirect
UniPathway (UP)L-histidine biosynthesis3.13e-11InformativeDirect
UniPathway (UP)amine and polyamine biosynthesis3.219e-10InformativeDirect
UniPathway (UP)organic acid degradation1.519e-07InformativeDirect
UniPathway (UP)putrescine metabolism0.789InformativeInherited
UniPathway (UP)amine and polyamine degradation1InformativeInherited
UniPathway (UP)polyol degradation1InformativeInherited
UniPathway (UP)myo-inositol degradation into acetyl-CoA0Highly InformativeDirect
UniPathway (UP)L-proline biosynthesis0Highly InformativeDirect
UniPathway (UP)L-arginine degradation via AST pathway0Highly InformativeDirect
UniPathway (UP)putrescine degradation0Highly InformativeDirect
UniPathway (UP)betaine biosynthesis0Highly InformativeDirect
UniPathway (UP)L-proline degradation1.212e-09Highly InformativeDirect
UniPathway (UP)bacterial bioluminescence1Highly InformativeInherited

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 15 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a ALDH-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 15 hidden Markov models representing the ALDH-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]