SUPERFAMILY 1.75 HMM library and genome assignments server


Nucleotide-diphospho-sugar transferases superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Nucleotide-diphospho-sugar transferases [ 53447]
Superfamily:   Nucleotide-diphospho-sugar transferases [ 53448] (19)
Families:   Spore coat polysaccharide biosynthesis protein SpsA [ 53449]
  beta 1,4 galactosyltransferase (b4GalT1) [ 53452]
  Galactosyltransferase LgtC [ 53458]
  Glycogenin [ 75273]
  alpha-1,3-galactosyltransferase-like [ 64131] (3)
  UDP-glucose pyrophosphorylase [ 53461] (3)
  glucose-1-phosphate thymidylyltransferase [ 53464] (3)
  1,3-glucuronyltransferase [ 53467] (2)
  N-acetylglucosaminyltransferase I [ 64136]
  Exostosin [ 89760]
  Molybdenum cofactor biosynthesis protein MobA [ 53470]
  Cytidylytransferase [ 68901] (6)
  Glycolipid 2-alpha-mannosyltransferase [ 102609]
  Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain [ 117702]
  MGS-like [ 142691]
  TTHA0179-like [ 159717]
  mannose-1-phosphate guanylyl transferase [ 159720]
  MM2497-like [ 159723]
  Glycosylating toxin catalytic domain-like [ 159726] (3)


Superfamily statistics
Genomes (2,459) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 73,377 185,037 97
Proteins 72,134 181,662 97


Functional annotation
General category Metabolism
Detailed category Transferases

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process00Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process2.756e-064.047e-09Least InformativeDirect
Biological Process (BP)single-organism metabolic process0.00022494.558e-06Least InformativeDirect
Biological Process (BP)nitrogen compound metabolic process0.46811Least InformativeInherited
Biological Process (BP)regulation of cellular process11Least InformativeInherited
Biological Process (BP)cellular component organization or biogenesis0.38270.8864Least InformativeInherited
Biological Process (BP)multicellular organismal process11Least InformativeInherited
Biological Process (BP)developmental process11Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process11Least InformativeInherited
Biological Process (BP)heterocycle metabolic process11Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process11Least InformativeInherited
Biological Process (BP)single-organism cellular process11Least InformativeInherited
Biological Process (BP)protein metabolic process0.2140.0005348Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process00Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process00Moderately InformativeDirect
Biological Process (BP)cellular lipid metabolic process9.762e-126.457e-05Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process00Moderately InformativeDirect
Biological Process (BP)organonitrogen compound biosynthetic process0.3820.002838Moderately InformativeInherited
Biological Process (BP)negative regulation of cellular process0.82441Moderately InformativeInherited
Biological Process (BP)cellular component biogenesis0.51150.0002553Moderately InformativeInherited
Biological Process (BP)organic hydroxy compound metabolic process0.74831Moderately InformativeInherited
Biological Process (BP)nucleobase-containing small molecule metabolic process0.0032763.763e-11Moderately InformativeInherited
Biological Process (BP)lipid biosynthetic process4.742e-051Moderately InformativeInherited
Biological Process (BP)phosphate-containing compound metabolic process3.259e-060.001799Moderately InformativeInherited
Biological Process (BP)organophosphate metabolic process2.103e-050.002805Moderately InformativeInherited
Biological Process (BP)cellular protein modification process0.062040.000532Moderately InformativeInherited
Biological Process (BP)polysaccharide metabolic process5.075e-090InformativeDirect
Biological Process (BP)membrane lipid metabolic process8.522e-140InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process8.503e-080InformativeDirect
Biological Process (BP)cellular carbohydrate metabolic process2.011e-090InformativeDirect
Biological Process (BP)sulfur compound biosynthetic process0.058483.962e-06InformativeInherited
Biological Process (BP)regulation of cell proliferation0.065181InformativeInherited
Biological Process (BP)peptidyl-amino acid modification0.37120.7025InformativeInherited
Biological Process (BP)alcohol metabolic process0.26131InformativeInherited
Biological Process (BP)isoprenoid metabolic process0.60681InformativeInherited
Biological Process (BP)phospholipid metabolic process0.00015680.05428InformativeInherited
Biological Process (BP)glycerolipid metabolic process0.36131InformativeInherited
Biological Process (BP)hexose metabolic process0.070280.1733InformativeInherited
Biological Process (BP)aminoglycan biosynthetic process00Highly InformativeDirect
Biological Process (BP)protein glycosylation00Highly InformativeDirect
Biological Process (BP)nucleotide-sugar metabolic process2.28e-090Highly InformativeDirect
Biological Process (BP)extracellular matrix organization1.757e-071.456e-10Highly InformativeDirect
Biological Process (BP)cell wall biogenesis5.83e-090Highly InformativeDirect
Biological Process (BP)post-translational protein modification3.665e-050Highly InformativeDirect
Biological Process (BP)cell wall macromolecule metabolic process0.00083780Highly InformativeDirect
Biological Process (BP)membrane lipid biosynthetic process6.09e-150Highly InformativeDirect
Biological Process (BP)phosphatidylinositol metabolic process4.565e-100.0004225Highly InformativeDirect
Biological Process (BP)cellular component macromolecule biosynthetic process7.608e-050Highly InformativeDirect
Biological Process (BP)glycosaminoglycan metabolic process00.7255Highly InformativeInherited
Biological Process (BP)negative regulation of cell proliferation0.0013680.6638Highly InformativeInherited
Biological Process (BP)glycosphingolipid metabolic process0.023860.0002838Highly InformativeInherited
Biological Process (BP)glycerophospholipid biosynthetic process0.14310.1247Highly InformativeInherited
Molecular Function (MF)transferase activity00Least InformativeDirect
Molecular Function (MF)binding11Least InformativeInherited
Molecular Function (MF)transferase activity, transferring phosphorus-containing groups11Moderately InformativeInherited
Molecular Function (MF)cation binding0.29250.7806Moderately InformativeInherited
Molecular Function (MF)transferase activity, transferring glycosyl groups00InformativeDirect
Molecular Function (MF)nucleotidyltransferase activity00InformativeDirect
Molecular Function (MF)magnesium ion binding0.00028990.0004144Highly InformativeDirect
Molecular Function (MF)transferase activity, transferring hexosyl groups1.107e-070Highly InformativeDirect
Molecular Function (MF)UDP-glycosyltransferase activity0.0012720Highly InformativeInherited
Cellular Component (CC)intracellular organelle part0.69880.9792Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle0.18410.3849Least InformativeInherited
Cellular Component (CC)protein complex11Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.038893.129e-15Least InformativeInherited
Cellular Component (CC)membrane0.00033770.001274Least InformativeInherited
Cellular Component (CC)endoplasmic reticulum2.223e-063.129e-15Moderately InformativeDirect
Cellular Component (CC)endomembrane system1.834e-100Moderately InformativeDirect
Cellular Component (CC)organelle membrane1.108e-066.149e-15Moderately InformativeDirect
Cellular Component (CC)intrinsic to membrane0.018140.0005637Moderately InformativeInherited
Cellular Component (CC)Golgi apparatus00InformativeDirect
Cellular Component (CC)integral to membrane1.714e-059.876e-05InformativeDirect
Cellular Component (CC)Golgi membrane2.083e-100Highly InformativeDirect
Cellular Component (CC)cis-Golgi network3.294e-059.045e-06Highly InformativeDirect
Cellular Component (CC)integral to organelle membrane0.063746.062e-06Highly InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0 Least Informative Direct
Biological Process (BP) protein metabolic process 0.0005348 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 4.047e-09 Least Informative Direct
Biological Process (BP) single-organism metabolic process 4.558e-06 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.8864 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular protein modification process 0.000532 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) cellular component biogenesis 0.0002553 Moderately Informative Direct
Biological Process (BP) cellular lipid metabolic process 6.457e-05 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 3.763e-11 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0 Moderately Informative Direct
Biological Process (BP) system process 1 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 0.002838 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) organic hydroxy compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 1 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) tissue development 0.279 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) lipid biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.001799 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.002805 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 1 Moderately Informative Inherited
Biological Process (BP) gene expression 1 Moderately Informative Inherited
Biological Process (BP) oxidation-reduction process 1 Moderately Informative Inherited
Biological Process (BP) homeostatic process 0.6968 Moderately Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0 Informative Direct
Biological Process (BP) membrane lipid metabolic process 0 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0 Informative Direct
Biological Process (BP) sulfur compound biosynthetic process 3.962e-06 Informative Direct
Biological Process (BP) regulation of body fluid levels 1.484e-05 Informative Direct
Biological Process (BP) organ morphogenesis 1 Informative Inherited
Biological Process (BP) regulation of cell proliferation 1 Informative Inherited
Biological Process (BP) regulation of anatomical structure size 0.01744 Informative Inherited
Biological Process (BP) growth 0.01503 Informative Inherited
Biological Process (BP) peptidyl-amino acid modification 0.7025 Informative Inherited
Biological Process (BP) alcohol metabolic process 1 Informative Inherited
Biological Process (BP) isoprenoid metabolic process 1 Informative Inherited
Biological Process (BP) central nervous system development 0.5391 Informative Inherited
Biological Process (BP) cellular metabolic compound salvage 1 Informative Inherited
Biological Process (BP) nucleotide biosynthetic process 0.5811 Informative Inherited
Biological Process (BP) embryonic morphogenesis 0.08038 Informative Inherited
Biological Process (BP) tube development 0.1034 Informative Inherited
Biological Process (BP) tissue morphogenesis 0.01659 Informative Inherited
Biological Process (BP) epithelium development 0.2178 Informative Inherited
Biological Process (BP) glycerolipid metabolic process 1 Informative Inherited
Biological Process (BP) phospholipid metabolic process 0.05428 Informative Inherited
Biological Process (BP) posttranscriptional regulation of gene expression 0.7267 Informative Inherited
Biological Process (BP) energy derivation by oxidation of organic compounds 0.06151 Informative Inherited
Biological Process (BP) hexose metabolic process 0.1733 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.3751 Informative Inherited
Biological Process (BP) aminoglycan biosynthetic process 0 Highly Informative Direct
Biological Process (BP) amino sugar metabolic process 2.434e-07 Highly Informative Direct
Biological Process (BP) energy reserve metabolic process 1.132e-06 Highly Informative Direct
Biological Process (BP) translational initiation 4.008e-15 Highly Informative Direct
Biological Process (BP) protein glycosylation 0 Highly Informative Direct
Biological Process (BP) glycosphingolipid metabolic process 0.0002838 Highly Informative Direct
Biological Process (BP) nucleotide-sugar metabolic process 0 Highly Informative Direct
Biological Process (BP) photorespiration 0.0004397 Highly Informative Direct
Biological Process (BP) glial cell differentiation 0.0001448 Highly Informative Direct
Biological Process (BP) extracellular matrix organization 1.456e-10 Highly Informative Direct
Biological Process (BP) cell wall biogenesis 0 Highly Informative Direct
Biological Process (BP) post-translational protein modification 0 Highly Informative Direct
Biological Process (BP) cell wall macromolecule metabolic process 0 Highly Informative Direct
Biological Process (BP) external encapsulating structure organization 0 Highly Informative Direct
Biological Process (BP) membrane lipid biosynthetic process 0 Highly Informative Direct
Biological Process (BP) phosphatidylinositol metabolic process 0.0004225 Highly Informative Direct
Biological Process (BP) cellular component macromolecule biosynthetic process 0 Highly Informative Direct
Biological Process (BP) epidermis development 0.06744 Highly Informative Inherited
Biological Process (BP) negative regulation of cell proliferation 0.6638 Highly Informative Inherited
Biological Process (BP) oligosaccharide metabolic process 0.6617 Highly Informative Inherited
Biological Process (BP) epithelial tube morphogenesis 0.3942 Highly Informative Inherited
Biological Process (BP) morphogenesis of a branching epithelium 0.1749 Highly Informative Inherited
Biological Process (BP) glycerophospholipid biosynthetic process 0.1247 Highly Informative Inherited
Biological Process (BP) regulation of translation 0.1128 Highly Informative Inherited
Biological Process (BP) glycosaminoglycan metabolic process 0.7255 Highly Informative Inherited
Biological Process (BP) tube formation 0.001742 Highly Informative Inherited
Biological Process (BP) morphogenesis of embryonic epithelium 0.1218 Highly Informative Inherited
Molecular Function (MF) transferase activity 0 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) enzyme regulator activity 0.8101 Moderately Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 1 Moderately Informative Inherited
Molecular Function (MF) organic cyclic compound binding 1 Moderately Informative Inherited
Molecular Function (MF) heterocyclic compound binding 1 Moderately Informative Inherited
Molecular Function (MF) cation binding 0.7806 Moderately Informative Inherited
Molecular Function (MF) transferase activity, transferring glycosyl groups 0 Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct
Molecular Function (MF) GTPase regulator activity 0.001585 Informative Inherited
Molecular Function (MF) RNA binding 0.2933 Informative Inherited
Molecular Function (MF) magnesium ion binding 0.0004144 Highly Informative Direct
Molecular Function (MF) guanyl-nucleotide exchange factor activity 3.154e-07 Highly Informative Direct
Molecular Function (MF) translation factor activity, nucleic acid binding 6.135e-13 Highly Informative Direct
Molecular Function (MF) UDP-glycosyltransferase activity 0 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring hexosyl groups 0 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring pentosyl groups 1 Highly Informative Inherited
Molecular Function (MF) adenylyltransferase activity 1 Highly Informative Inherited
Cellular Component (CC) cytoplasmic part 3.129e-15 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.3849 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.9792 Least Informative Inherited
Cellular Component (CC) protein complex 1 Least Informative Inherited
Cellular Component (CC) membrane 0.001274 Least Informative Inherited
Cellular Component (CC) endoplasmic reticulum 3.129e-15 Moderately Informative Direct
Cellular Component (CC) endomembrane system 0 Moderately Informative Direct
Cellular Component (CC) organelle membrane 6.149e-15 Moderately Informative Direct
Cellular Component (CC) intrinsic to membrane 0.0005637 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 1 Moderately Informative Inherited
Cellular Component (CC) Golgi apparatus 0 Informative Direct
Cellular Component (CC) integral to membrane 9.876e-05 Informative Direct
Cellular Component (CC) contractile fiber part 0.2283 Informative Inherited
Cellular Component (CC) Golgi membrane 0 Highly Informative Direct
Cellular Component (CC) cis-Golgi network 9.045e-06 Highly Informative Direct
Cellular Component (CC) trans-Golgi network 3.464e-11 Highly Informative Direct
Cellular Component (CC) integral to organelle membrane 6.062e-06 Highly Informative Direct
Cellular Component (CC) organelle subcompartment 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect
Enzyme Commission (EC)Isomerases1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Transferring groups other than amino-acyl groups0Moderately InformativeDirect
Enzyme Commission (EC)Glycosyltransferases7.521e-11Moderately InformativeDirect
Enzyme Commission (EC)Intramolecular oxidoreductases1Moderately InformativeInherited
Enzyme Commission (EC)Acting on paired donors, with incorporation or red0.8741Moderately InformativeInherited
Enzyme Commission (EC)Transferring other groups1InformativeInherited
Enzyme Commission (EC)Interconverting aldoses and ketoses, and related c1InformativeInherited
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited
Enzyme Commission (EC)Cellulose synthase (UDP-forming)0Highly InformativeDirect
Enzyme Commission (EC)With 2-oxoglutarate as one donor, and incorporatio1.082e-08Highly InformativeDirect
Enzyme Commission (EC)Transferases for other substituted phosphate group0.3125Highly InformativeInherited

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of skeletal morphology0.0001417Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of head and neck0.0002176Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the lower limb0.0001768Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal joint morphology0.1037Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the anterior segment of the eye0.6057Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the cornea0.1474InformativeInherited
Phenotypic Abnormality (PA)Abnormality of joint mobility0.1675InformativeInherited
Phenotypic Abnormality (PA)Microcornea0.0006356Highly InformativeDirect
Phenotypic Abnormality (PA)Joint hypermobility0.3031Highly InformativeInherited

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)early embryonic lethal0.1426Moderately InformativeInherited
Worm Phenotype (WP)reproductive system morphology variant0.4931Moderately InformativeInherited
Worm Phenotype (WP)organ system development variant0.7507Moderately InformativeInherited
Worm Phenotype (WP)alimentary system development variant0.02712InformativeInherited
Worm Phenotype (WP)vulva development variant0.08713InformativeInherited
Worm Phenotype (WP)one cell arrest early emb0.0002376Highly InformativeDirect
Worm Phenotype (WP)pharyngeal development variant0.000365Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)morphology0.1978Moderately InformativeInherited
Yeast Phenotype (YP)subcellular morphology0.3354InformativeInherited
Yeast Phenotype (YP)chitin deposition0.0004244Highly InformativeDirect

Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system0.105Least InformativeInherited
Fly Anatomy (FA)larva0.3167Least InformativeInherited
Fly Anatomy (FA)anatomical group0.01073Moderately InformativeInherited
Fly Anatomy (FA)cuticle0.5523Moderately InformativeInherited
Fly Anatomy (FA)embryonic/larval cuticle0.002765InformativeInherited
Fly Anatomy (FA)denticle belt2.503e-05Highly InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)head0.1357Least InformativeInherited
Zebrafish Anatomy (ZA)multi-tissue structure0.1475Least InformativeInherited
Zebrafish Anatomy (ZA)cell0.3908Least InformativeInherited
Zebrafish Anatomy (ZA)cranium0.0007473Moderately InformativeDirect
Zebrafish Anatomy (ZA)skeletal element0.001218Moderately InformativeInherited
Zebrafish Anatomy (ZA)pharyngeal arch0.003271Moderately InformativeInherited
Zebrafish Anatomy (ZA)anatomical cluster0.01392Moderately InformativeInherited
Zebrafish Anatomy (ZA)digestive system0.1183Moderately InformativeInherited
Zebrafish Anatomy (ZA)surface structure0.1222Moderately InformativeInherited
Zebrafish Anatomy (ZA)pharyngeal arch 3-70.0005679InformativeDirect
Zebrafish Anatomy (ZA)ventral mandibular arch0.01411InformativeInherited
Zebrafish Anatomy (ZA)pharyngeal arch cartilage0.1515InformativeInherited
Zebrafish Anatomy (ZA)stromal cell7.624e-05Highly InformativeDirect
Zebrafish Anatomy (ZA)Meckel's cartilage0.0006998Highly InformativeDirect

Document: ZA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)plant cell0.1331Least InformativeInherited
Plant ANatomical entity (PAN)portion of vascular tissue2.531e-11InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue5.384e-09InformativeDirect
Plant ANatomical entity (PAN)trichome4.506e-11Highly InformativeDirect
Plant ANatomical entity (PAN)leaf mesophyll1.113e-06Highly InformativeDirect
Plant ANatomical entity (PAN)leaf epidermis2.901e-06Highly InformativeDirect
Plant ANatomical entity (PAN)phloem0.0001027Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Acyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Glycosyltransferases7.389e-08Moderately InformativeDirect
Enzyme Commission (EC)Isomerases1Moderately InformativeInherited
Enzyme Commission (EC)Hexosyltransferases0InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or reduction of molecular oxygen1InformativeInherited
Enzyme Commission (EC)Intramolecular oxidoreductases1InformativeInherited
Enzyme Commission (EC)Intramolecular transferases (mutases)1InformativeInherited
Enzyme Commission (EC)With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.034e-08Highly InformativeDirect
Enzyme Commission (EC)Transferases for other substituted phosphate groups0.5565Highly InformativeInherited
Enzyme Commission (EC)Interconverting aldoses and ketoses, and related compounds1Highly InformativeInherited

Document: EC annotation of SCOP domains

DrugBank ATC (DB)

(show details)
DB termFDR (all)SDDB levelAnnotation (direct or inherited)
Drugbank ATC_code (DB)vitamins0.04905Least InformativeInherited
Drugbank ATC_code (DB)genito urinary system and sex hormones0.01497Moderately InformativeInherited
Drugbank ATC_code (DB)other ophthalmologicals1Moderately InformativeInherited
Drugbank ATC_code (DB)antiinflammatory and antirheumatic products, non-steroids1.318e-05InformativeDirect
Drugbank ATC_code (DB)ascorbic acid (vitamin c), incl. combinations0.0002116InformativeDirect
Drugbank ATC_code (DB)ascorbic acid0.0002116InformativeDirect
Drugbank ATC_code (DB)ascorbic acid0.0002116InformativeDirect
Drugbank ATC_code (DB)glucosamine1.022e-07Highly InformativeDirect

Document: DB annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processLipid metabolism1Moderately InformativeInherited
Biological processCell shape0InformativeDirect
Biological processCell wall biogenesis/degradation0InformativeDirect
Biological processAntibiotic resistance1.375e-15InformativeDirect
Biological processLipid biosynthesis0.2437InformativeInherited
Biological processGlycogen biosynthesis0Highly InformativeDirect
Biological processGlycogen metabolism0Highly InformativeDirect
Biological processIsoprene biosynthesis0Highly InformativeDirect
Biological processLipopolysaccharide biosynthesis0Highly InformativeDirect
Biological processMolybdenum cofactor biosynthesis0Highly InformativeDirect
Biological processNodulation7.145e-10Highly InformativeDirect
Biological processLipid A biosynthesis3.44e-09Highly InformativeDirect
Biological processSphingolipid metabolism3.726e-07Highly InformativeDirect
Biological processPeptidoglycan synthesis3.419e-06Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentCytoplasm3.634e-06Least InformativeDirect
Cellular componentGolgi apparatus0Moderately InformativeDirect
Cellular componentEndoplasmic reticulum6.395e-16Moderately InformativeDirect
Cellular componentPlastid1Moderately InformativeInherited
DomainTransmembrane0Least InformativeDirect
DomainRepeat5.738e-14Least InformativeDirect
DomainSignal-anchor0Moderately InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionNucleotide-binding1Least InformativeInherited
Molecular functionMagnesium0Moderately InformativeDirect
Molecular functionManganese0Moderately InformativeDirect
Molecular functionCalcium6.3e-06Moderately InformativeDirect
Molecular functionGTP-binding0InformativeDirect
Molecular functionLectin0InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationNucleotidyltransferase0Moderately InformativeDirect
Post-translational modificationAcyltransferase0InformativeDirect
Post-translational modificationGlycosyltransferase0InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)biopolymer metabolism0Least InformativeDirect
UniPathway (UP)carbohydrate metabolism0Least InformativeDirect
UniPathway (UP)lipid metabolism0Least InformativeDirect
UniPathway (UP)cofactor metabolism1Least InformativeInherited
UniPathway (UP)biopolymer biosynthesis0Moderately InformativeDirect
UniPathway (UP)metabolic intermediate biosynthesis0Moderately InformativeDirect
UniPathway (UP)lipid biosynthesis0Moderately InformativeDirect
UniPathway (UP)glycan metabolism0Moderately InformativeDirect
UniPathway (UP)nucleotide metabolism0Moderately InformativeDirect
UniPathway (UP)cellular component biogenesis0Moderately InformativeDirect
UniPathway (UP)membrane lipid metabolism0Moderately InformativeDirect
UniPathway (UP)carbohydrate biosynthesis1Moderately InformativeInherited
UniPathway (UP)cell wall metabolism1Moderately InformativeInherited
UniPathway (UP)protein glycosylation0InformativeDirect
UniPathway (UP)isoprenoid biosynthesis0InformativeDirect
UniPathway (UP)lipopolysaccharide biosynthesis2.8e-08InformativeDirect
UniPathway (UP)nucleotide-sugar biosynthesis0.9654InformativeInherited
UniPathway (UP)pigment biosynthesis1InformativeInherited
UniPathway (UP)glycolipid biosynthesis1InformativeInherited
UniPathway (UP)coenzyme F420 biosynthesis0Highly InformativeDirect
UniPathway (UP)UDP-N-acetyl-alpha-D-glucosamine biosynthesis0Highly InformativeDirect
UniPathway (UP)LPS oligosaccharide biosynthesis0Highly InformativeDirect
UniPathway (UP)glycosaminoglycan metabolism0.0002679Highly InformativeDirect
UniPathway (UP)carotenoid biosynthesis1Highly InformativeInherited

Document: UP annotation of SCOP domains

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 43 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Nucleotide-diphospho-sugar transferases domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 43 hidden Markov models representing the Nucleotide-diphospho-sugar transferases superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · DrugBank ATC (DB) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]