SUPERFAMILY 1.75 HMM library and genome assignments server


Ribosomal protein L32e superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Barstar-like [ 52037] (2)
Superfamily:   Ribosomal protein L32e [ 52042]
Families:   Ribosomal protein L32e [ 52043]


Superfamily statistics
Genomes (586) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 1,017 1,188 5
Proteins 1,012 1,182 5


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process1.642e-051.694e-05Least InformativeDirect
Biological Process (BP)protein metabolic process3.822e-062.124e-05Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process2.24e-050.000254Least InformativeDirect
Biological Process (BP)gene expression8.756e-091.688e-07Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process4.952e-099.304e-08Moderately InformativeDirect
Biological Process (BP)translation3.9e-126.027e-12InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle1.753e-057.719e-05Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.00041980.001204Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.092490.02313Least InformativeInherited
Cellular Component (CC)cytosol8.625e-084.04e-08Moderately InformativeDirect
Cellular Component (CC)ribonucleoprotein complex3.231e-063.26e-06Moderately InformativeDirect
Cellular Component (CC)large ribosomal subunit2.883e-127.803e-13InformativeDirect
Cellular Component (CC)cytosolic ribosome8.528e-113.591e-12InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 1.694e-05 Least Informative Direct
Biological Process (BP) protein metabolic process 2.124e-05 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.000254 Least Informative Direct
Biological Process (BP) gene expression 1.688e-07 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 9.304e-08 Moderately Informative Direct
Biological Process (BP) translation 6.027e-12 Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 7.719e-05 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.001204 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.02313 Least Informative Inherited
Cellular Component (CC) cytosol 4.04e-08 Moderately Informative Direct
Cellular Component (CC) ribonucleoprotein complex 3.26e-06 Moderately Informative Direct
Cellular Component (CC) large ribosomal subunit 7.803e-13 Informative Direct
Cellular Component (CC) cytosolic ribosome 3.591e-12 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR001515 SSF52042 Protein matches
Abstract

The L32e family consists of proteins that have 135 to 240 amino-acid residues.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L32e domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Ribosomal protein L32e superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]