SUPERFAMILY 1.75 HMM library and genome assignments server


Phosphohistidine domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   The "swivelling" beta/beta/alpha domain [ 52008] (10)
Superfamily:   Phosphohistidine domain [ 52009] (2)
Families:   Pyruvate phosphate dikinase, central domain [ 52010]
  N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system [ 52013]


Superfamily statistics
Genomes (2,751) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 6,590 43,444 12
Proteins 6,589 43,438 12


Functional annotation
General category Regulation
Detailed category Kinases/phosphatases

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.006546 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0.0001759 Moderately Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 1.751e-06 Informative Direct
Biological Process (BP) hexose metabolic process 5.918e-08 Informative Direct
Biological Process (BP) monosaccharide biosynthetic process 1.027e-10 Highly Informative Direct
Molecular Function (MF) transferase activity 1.016e-06 Least Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 4.556e-09 Moderately Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep1Moderately InformativeInherited
Enzyme Commission (EC)Phosphotransferases with a nitrogenous group as ac0InformativeDirect
Enzyme Commission (EC)Pyruvate kinase0Highly InformativeDirect
Enzyme Commission (EC)Phosphoenolpyruvate--protein phosphotransferase0Highly InformativeDirect
Enzyme Commission (EC)Pyruvate, phosphate dikinase8.653e-09Highly InformativeDirect
Enzyme Commission (EC)Pyruvate, water dikinase7.34e-07Highly InformativeDirect

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor1Moderately InformativeInherited
Enzyme Commission (EC)Phosphotransferases with a nitrogenous group as acceptor0Highly InformativeDirect
Enzyme Commission (EC)Phosphotransferases with paired acceptors0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processGlycolysis1.005e-08InformativeDirect
Biological processPhotosynthesis1.129e-05InformativeDirect
Biological processSugar transport0Highly InformativeDirect
Biological processPhosphotransferase system0Highly InformativeDirect
Cellular componentCytoplasm1.604e-05Least InformativeDirect
DomainTransit peptide0.0001598Moderately InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionNucleotide-binding0.001738Least InformativeInherited
Molecular functionMagnesium0Moderately InformativeDirect
Molecular functionATP-binding5.222e-11Moderately InformativeDirect
Molecular functionPotassium4.432e-10InformativeDirect
Molecular functionPyruvate0Highly InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationKinase0Moderately InformativeDirect
Post-translational modificationPhosphoprotein4.593e-12Least InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR008279 SSF52009 Protein matches
Abstract A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [PubMed7686067, PubMed8973315, PubMed2176881, PubMed1557039]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it [PubMed12083528]. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain at its N-terminus.

InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Phosphohistidine domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Phosphohistidine domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]