SUPERFAMILY 1.75 HMM library and genome assignments server


Quinoprotein alcohol dehydrogenase-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   8-bladed beta-propeller [ 50997] (3)
Superfamily:   Quinoprotein alcohol dehydrogenase-like [ 50998]
Families:   Quinoprotein alcohol dehydrogenase-like [ 50999] (3)


Superfamily statistics
Genomes (2,225) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 17,545 0 9
Proteins 16,288 0 9


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular macromolecule metabolic process0.85890.102Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.70590.417Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process0.71340.3889Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.93950.9624Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.81360.6118Least InformativeInherited
Biological Process (BP)regulation of cellular process0.037410.9589Least InformativeInherited
Biological Process (BP)single-organism cellular process0.16250.3934Least InformativeInherited
Biological Process (BP)developmental process0.24821Least InformativeInherited
Biological Process (BP)cellular component organization or biogenesis0.37220.4913Least InformativeInherited
Biological Process (BP)response to stimulus0.79911Least InformativeInherited
Biological Process (BP)RNA metabolic process0.022426.162e-05Moderately InformativeInherited
Biological Process (BP)signal transduction0.035110.001277Moderately InformativeInherited
Biological Process (BP)organelle organization0.50520.2395Moderately InformativeInherited
Biological Process (BP)anatomical structure morphogenesis0.028651Moderately InformativeInherited
Biological Process (BP)cellular component biogenesis0.090290.0008208Moderately InformativeInherited
Biological Process (BP)single-organism developmental process0.093090.8557Moderately InformativeInherited
Biological Process (BP)cellular response to stress0.072421.605e-05Moderately InformativeInherited
Biological Process (BP)cellular response to chemical stimulus0.12640.004249Moderately InformativeInherited
Biological Process (BP)response to organic substance0.26610.1388Moderately InformativeInherited
Biological Process (BP)nucleic acid phosphodiester bond hydrolysis0.0026381.343e-05InformativeInherited
Biological Process (BP)programmed cell death0.010680.00174InformativeInherited
Biological Process (BP)intracellular signal transduction3.539e-050.0885InformativeInherited
Biological Process (BP)cell projection organization0.0015310.5482InformativeInherited
Biological Process (BP)cellular component morphogenesis0.0030320.8173InformativeInherited
Biological Process (BP)anatomical structure formation involved in morphogenesis0.017850.7279InformativeInherited
Biological Process (BP)organelle assembly0.00080940.01885InformativeInherited
Biological Process (BP)ER-nucleus signaling pathway6.982e-050Highly InformativeDirect
Biological Process (BP)response to endoplasmic reticulum stress0.00024930Highly InformativeDirect
Biological Process (BP)response to topologically incorrect protein0.00011520Highly InformativeDirect
Biological Process (BP)RNA phosphodiester bond hydrolysis, endonucleolytic1.243e-050.0005721Highly InformativeDirect
Biological Process (BP)intrinsic apoptotic signaling pathway0.018953.316e-06Highly InformativeInherited
Biological Process (BP)cellular component assembly involved in morphogenesis0.00041290.01327Highly InformativeInherited
Biological Process (BP)cell projection assembly0.00067740.003039Highly InformativeInherited
Biological Process (BP)cilium organization0.0011420.000105Highly InformativeInherited
Biological Process (BP)cell projection morphogenesis0.00010680.1756Highly InformativeInherited
Molecular Function (MF)hydrolase activity0.88191Least InformativeInherited
Molecular Function (MF)hydrolase activity, acting on ester bonds0.15920.05725Moderately InformativeInherited
Molecular Function (MF)nuclease activity0.00057351.142e-07InformativeDirect
Molecular Function (MF)endoribonuclease activity5.726e-060.000107Highly InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle0.84941Least InformativeInherited
Cellular Component (CC)cytoplasmic part11Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.50730.0002661Least InformativeInherited
Cellular Component (CC)membrane0.62591Least InformativeInherited
Cellular Component (CC)endoplasmic reticulum0.0018935.2e-08Moderately InformativeInherited
Cellular Component (CC)endomembrane system0.0074066.591e-09Moderately InformativeInherited
Cellular Component (CC)organelle membrane0.091680.0004182Moderately InformativeInherited
Cellular Component (CC)endoplasmic reticulum membrane0.00013575.178e-13InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) heterocycle metabolic process 0.417 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.9589 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.3934 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.4913 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.3889 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.9624 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.6118 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.102 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.2459 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) RNA metabolic process 6.162e-05 Moderately Informative Direct
Biological Process (BP) cellular response to stress 1.605e-05 Moderately Informative Direct
Biological Process (BP) cellular component biogenesis 0.0008208 Moderately Informative Direct
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.8557 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.2395 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 0.004249 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.001277 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.4566 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.9614 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.9846 Moderately Informative Inherited
Biological Process (BP) regulation of catalytic activity 0.1388 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 0.2714 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.9907 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.6735 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 0.1074 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.746 Moderately Informative Inherited
Biological Process (BP) positive regulation of molecular function 0.129 Moderately Informative Inherited
Biological Process (BP) regulation of phosphate metabolic process 0.6338 Moderately Informative Inherited
Biological Process (BP) response to organic substance 0.1388 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.3302 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 0.35 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) immune system process 0.932 Moderately Informative Inherited
Biological Process (BP) organ development 0.2827 Moderately Informative Inherited
Biological Process (BP) tissue development 1 Moderately Informative Inherited
Biological Process (BP) phosphorylation 0.0002495 Informative Direct
Biological Process (BP) ribonucleoprotein complex biogenesis 0.0003554 Informative Direct
Biological Process (BP) nucleic acid phosphodiester bond hydrolysis 1.343e-05 Informative Direct
Biological Process (BP) intracellular signal transduction 0.0885 Informative Inherited
Biological Process (BP) programmed cell death 0.00174 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 0.1483 Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.8173 Informative Inherited
Biological Process (BP) cell projection organization 0.5482 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.7279 Informative Inherited
Biological Process (BP) organelle assembly 0.01885 Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 0.7478 Informative Inherited
Biological Process (BP) positive regulation of macromolecule biosynthetic process 0.9472 Informative Inherited
Biological Process (BP) positive regulation of gene expression 0.905 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 1 Informative Inherited
Biological Process (BP) positive regulation of nitrogen compound metabolic process 0.9909 Informative Inherited
Biological Process (BP) regulation of organelle organization 0.02107 Informative Inherited
Biological Process (BP) negative regulation of cellular component organization 0.04295 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 0.3037 Informative Inherited
Biological Process (BP) posttranscriptional regulation of gene expression 0.02783 Informative Inherited
Biological Process (BP) negative regulation of protein metabolic process 0.1538 Informative Inherited
Biological Process (BP) ncRNA metabolic process 0.1872 Informative Inherited
Biological Process (BP) positive regulation of hydrolase activity 0.08074 Informative Inherited
Biological Process (BP) regulation of protein phosphorylation 0.3226 Informative Inherited
Biological Process (BP) positive regulation of protein modification process 0.01234 Informative Inherited
Biological Process (BP) regulation of kinase activity 0.1104 Informative Inherited
Biological Process (BP) positive regulation of phosphate metabolic process 0.07116 Informative Inherited
Biological Process (BP) hematopoietic or lymphoid organ development 0.06833 Informative Inherited
Biological Process (BP) ossification 0.0001822 Highly Informative Direct
Biological Process (BP) protein phosphorylation 7.259e-06 Highly Informative Direct
Biological Process (BP) ER-nucleus signaling pathway 0 Highly Informative Direct
Biological Process (BP) response to endoplasmic reticulum stress 0 Highly Informative Direct
Biological Process (BP) response to topologically incorrect protein 0 Highly Informative Direct
Biological Process (BP) cilium organization 0.000105 Highly Informative Direct
Biological Process (BP) RNA phosphodiester bond hydrolysis, endonucleolytic 0.0005721 Highly Informative Direct
Biological Process (BP) intrinsic apoptotic signaling pathway 3.316e-06 Highly Informative Direct
Biological Process (BP) transmembrane receptor protein tyrosine kinase signaling pathway 0.0238 Highly Informative Inherited
Biological Process (BP) cell projection morphogenesis 0.1756 Highly Informative Inherited
Biological Process (BP) cellular component assembly involved in morphogenesis 0.01327 Highly Informative Inherited
Biological Process (BP) cell projection assembly 0.003039 Highly Informative Inherited
Biological Process (BP) positive regulation of transcription, DNA-dependent 0.8107 Highly Informative Inherited
Biological Process (BP) regulation of microtubule polymerization or depolymerization 0.04038 Highly Informative Inherited
Biological Process (BP) negative regulation of cytoskeleton organization 0.006775 Highly Informative Inherited
Biological Process (BP) regulation of translation 0.002112 Highly Informative Inherited
Biological Process (BP) positive regulation of protein kinase activity 0.01054 Highly Informative Inherited
Biological Process (BP) cellular response to biotic stimulus 0.001132 Highly Informative Inherited
Biological Process (BP) skeletal system development 0.05157 Highly Informative Inherited
Biological Process (BP) connective tissue development 0.001653 Highly Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.1225 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 0.05725 Moderately Informative Inherited
Molecular Function (MF) nuclease activity 1.142e-07 Informative Direct
Molecular Function (MF) cytoskeletal protein binding 0.006228 Informative Inherited
Molecular Function (MF) kinase activity 0.03751 Informative Inherited
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 0.01523 Informative Inherited
Molecular Function (MF) endoribonuclease activity 0.000107 Highly Informative Direct
Molecular Function (MF) protein kinase activity 0.0009648 Highly Informative Direct
Molecular Function (MF) tubulin binding 0.003102 Highly Informative Inherited
Cellular Component (CC) intracellular organelle part 0.0002661 Least Informative Direct
Cellular Component (CC) protein complex 0.07985 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.01776 Least Informative Inherited
Cellular Component (CC) endoplasmic reticulum 5.2e-08 Moderately Informative Direct
Cellular Component (CC) endomembrane system 6.591e-09 Moderately Informative Direct
Cellular Component (CC) organelle membrane 0.0004182 Moderately Informative Direct
Cellular Component (CC) ribonucleoprotein complex 0.1007 Moderately Informative Inherited
Cellular Component (CC) intrinsic to membrane 0.5245 Moderately Informative Inherited
Cellular Component (CC) cytoskeleton 0.01008 Moderately Informative Inherited
Cellular Component (CC) endoplasmic reticulum membrane 5.178e-13 Informative Direct
Cellular Component (CC) microtubule cytoskeleton 3.46e-06 Informative Direct
Cellular Component (CC) ubiquitin ligase complex 0.001046 Informative Inherited
Cellular Component (CC) integral to membrane 0.4902 Informative Inherited
Cellular Component (CC) spindle 6.427e-09 Highly Informative Direct
Cellular Component (CC) intrinsic to organelle membrane 8.322e-06 Highly Informative Direct
Cellular Component (CC) cullin-RING ubiquitin ligase complex 0.0001827 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases1.049e-06Least InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)With a cytochrome as acceptor1.147e-14Highly InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details) Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell physiology variant0.0136Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.02876Least InformativeInherited
Worm Phenotype (WP)developmental timing variant0.3949Least InformativeInherited
Worm Phenotype (WP)larval development variant0.6469Least InformativeInherited
Worm Phenotype (WP)growth variant0.9682Least InformativeInherited
Worm Phenotype (WP)locomotion variant0.05863Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.1991Moderately InformativeInherited
Worm Phenotype (WP)protein metabolism variant0.0001013InformativeDirect
Worm Phenotype (WP)activity level variant0.001129InformativeInherited
Worm Phenotype (WP)lipid metabolism variant0.09966InformativeInherited
Worm Phenotype (WP)fat content increased0.0005572Highly InformativeDirect
Worm Phenotype (WP)early larval arrest0.0007819Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases3.096e-09Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups9.631e-06Least InformativeDirect
Enzyme Commission (EC)Hydrolases1Least InformativeInherited
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on the CH-OH group of donors2.136e-12Moderately InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase0InformativeDirect
Enzyme Commission (EC)Exoribonucleases producing 5'-phosphomonoesters5.295e-08InformativeDirect
Enzyme Commission (EC)With a cytochrome as acceptor0Highly InformativeDirect
Enzyme Commission (EC)Poly(A)-specific ribonuclease3.032e-10Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport1Least InformativeInherited
Biological processProtein transport0.0008751Moderately InformativeDirect
Biological processUbl conjugation pathway6.285e-10InformativeDirect
Biological processUnfolded protein response0Highly InformativeDirect
Cellular componentNucleus1.683e-07Least InformativeDirect
Cellular componentMembrane3.671e-07Least InformativeDirect
Cellular componentCytoplasm1Least InformativeInherited
Cellular componentCytoskeleton0Moderately InformativeDirect
Cellular componentEndoplasmic reticulum1.227e-09Moderately InformativeDirect
Cellular componentMicrotubule0InformativeDirect
Cellular componentCell outer membrane0InformativeDirect
Cellular componentPeriplasm7.819e-06InformativeDirect
Coding sequence diversityAlternative splicing0.0001585Least InformativeDirect
DomainRepeat3.093e-16Least InformativeDirect
DomainTransmembrane1Least InformativeInherited
DomainWD repeat0InformativeDirect
Molecular functionCalcium1.195e-05Moderately InformativeDirect
Post-translational modificationTransferase1Least InformativeInherited
Post-translational modificationKinase0.002833Moderately InformativeInherited
Post-translational modificationSerine/threonine-protein kinase5.25e-14InformativeDirect
Post-translational modificationPalmitate0Moderately InformativeDirect
Post-translational modificationADP-ribosylation7.124e-06InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)biopolymer metabolism5.094e-15Least InformativeDirect
UniPathway (UP)protein ubiquitination0Moderately InformativeDirect

Document: UP annotation of SCOP domains

InterPro annotation
Cross references IPR011047 SSF50998 Protein matches
Abstract

Quinoprotein alcohol dehydrogenases are a family of proteins found in methylotrophic or autotrophic bacteria. These quinoproteins use pyrroloquinoline quinone as their prosthetic group. There are three types of alcohol dehydrogenases: type I includes methanol dehydrogenase and ethanol dehydrogenase, type II includes soluble quinohaemoprotein with a C-terminal containing haem C, and type III includes quinoprotein alcohol dehydrogenase with a C-terminal cytochrome C domain [PubMed11761326]. These quinoproteins contain an 8-bladed beta-propeller motif, which is present in the N-terminal domain of quinoprotein alcohol dehydrogenase, ethanol dehydrogenase, and the heavy chain (alpha subunit) of methanol dehydrogenase [PubMed11714714, PubMed12686116, PubMed12686102].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Quinoprotein alcohol dehydrogenase-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the Quinoprotein alcohol dehydrogenase-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]