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Nucleic acid-binding proteins superfamily
SCOP classification
| Root: | SCOP hierarchy in SUPERFAMILY [ 0] (11) |
| Class: | All beta proteins [ 48724] (165) |
| Fold: | OB-fold [ 50198] (12) |
| | barrel, closed or partly opened n=5, S=10 or S=8; greek-key |
| Superfamily: | Nucleic acid-binding proteins [ 50249] (14) |
| Families: | Anticodon-binding domain [ 50250] (2) |
| | barrel, closed; n=5, S=10 |
| | RecG "wedge" domain [ 69259] |
| | DNA helicase RuvA subunit, N-terminal domain [ 50259] |
| | barrel, closed; n=5, S=10 |
| | Single strand DNA-binding domain, SSB [ 50263] (12) |
| | barrel, closed; n=5, S=10 |
| | Myf domain [ 50277] (6) |
| | Cold shock DNA-binding domain-like [ 50282] (22) |
| | barrel, closed; n=5, S=8 |
| | TRAM domain [ 101768] (3) |
| | Pfam 01938 |
| | Hypothetical protein MTH1 (MT0001), insert domain [ 74955] |
| | DNA ligase/mRNA capping enzyme postcatalytic domain [ 50307] (5) |
| | Phage ssDNA-binding proteins [ 50315] (3) |
| | barrel, open; n*=5, S*=8; the members' structures vary greater that those from cellular organisms |
| | DNA replication initiator (cdc21/cdc54) N-terminal domain [ 89332] |
| | RNA polymerase subunit RBP8 [ 50321] |
| | duplication; contains tandem repeat of two incomplete OB-folds; forms a single barrel; n=8, S=10 |
| | RecO N-terminal domain-like [ 117204] |
| | N-terminal part of Pfam 02565 |
| | TIP49 domain [ 141315] |
| | N-terminal part of Pfam 06068; the RuvA-like OB-fold domain in RuvB-like eukaryotic proteins |
Superfamily statistics
Functional annotation
| General category | Information |
| Detailed category | DNA replication/repair |
Function annotation of SCOP domain superfamilies
Jump to [ Top of page · SCOP classification · Functional annotation ]
Internal database links
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Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry
out SCOP domain assignments to all genomes at the superfamily level.
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Alignments of sequences to 106 models
in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical
are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.
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Browse and view proteins in genomes which have
different domain combinations including a Nucleic acid-binding proteins domain.
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Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.
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Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.
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There are 106 hidden Markov models representing the Nucleic acid-binding proteins superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.
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Jump to [ Top of page · SCOP classification · Functional annotation · Internal database links ]
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