SUPERFAMILY 1.75 HMM library and genome assignments server


14-3-3 protein superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   14-3-3 protein [ 48445]
Families:   14-3-3 protein [ 48446] (4)


Superfamily statistics
Genomes (444) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 2,488 2,618 8
Proteins 2,442 2,596 8


Functional annotation
General category coiled coil
Detailed category This is a complex coiled arrangement. The details of which will appear on this page shortly (some coiled coil details are being checked before they are included on the site). If you want to see examples of the states please click here here. If you require further details urgently please contact Owen Rackham

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)developmental process1.346e-060.0007279Least InformativeDirect
Biological Process (BP)single-organism cellular process9.911e-094.802e-06Least InformativeDirect
Biological Process (BP)localization1.21e-071.945e-08Least InformativeDirect
Biological Process (BP)response to stimulus0.064040.006228Least InformativeInherited
Biological Process (BP)multicellular organismal process6.413e-070.007389Least InformativeInherited
Biological Process (BP)regulation of metabolic process0.20920.6031Least InformativeInherited
Biological Process (BP)regulation of cellular process0.025510.1925Least InformativeInherited
Biological Process (BP)cell differentiation1.559e-102.02e-06Moderately InformativeDirect
Biological Process (BP)macromolecule localization7.886e-117.554e-09Moderately InformativeDirect
Biological Process (BP)cellular localization2.037e-074.951e-09Moderately InformativeDirect
Biological Process (BP)organic substance transport2.014e-054.844e-06Moderately InformativeDirect
Biological Process (BP)regulation of cell communication0.16460.3694Moderately InformativeInherited
Biological Process (BP)regulation of signaling0.092480.3056Moderately InformativeInherited
Biological Process (BP)regulation of response to stimulus0.96950.995Moderately InformativeInherited
Biological Process (BP)regulation of localization0.12610.08846Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process0.94971Moderately InformativeInherited
Biological Process (BP)regulation of cellular component organization0.11160.1112Moderately InformativeInherited
Biological Process (BP)signal transduction0.65830.3276Moderately InformativeInherited
Biological Process (BP)regulation of developmental process0.34650.9195Moderately InformativeInherited
Biological Process (BP)regulation of molecular function0.071550.004954Moderately InformativeInherited
Biological Process (BP)regulation of multicellular organismal process0.62341Moderately InformativeInherited
Biological Process (BP)regulation of protein metabolic process0.013120.0003273Moderately InformativeInherited
Biological Process (BP)regulation of cellular metabolic process0.31350.8879Moderately InformativeInherited
Biological Process (BP)negative regulation of cellular process0.020270.009814Moderately InformativeInherited
Biological Process (BP)negative regulation of metabolic process0.0044530.001272Moderately InformativeInherited
Biological Process (BP)single-organism developmental process0.40850.7086Moderately InformativeInherited
Biological Process (BP)organ development0.64431Moderately InformativeInherited
Biological Process (BP)nervous system development0.00022560.002214Moderately InformativeInherited
Biological Process (BP)apoptotic process3.043e-050.0005701InformativeDirect
Biological Process (BP)protein transport01.047e-05InformativeDirect
Biological Process (BP)regulation of intracellular transport0.00021950.0001595InformativeDirect
Biological Process (BP)regulation of protein localization0.00043470.000105InformativeDirect
Biological Process (BP)regulation of kinase activity7.877e-050.0006139InformativeDirect
Biological Process (BP)generation of neurons3.202e-113.497e-06InformativeDirect
Biological Process (BP)positive regulation of cellular component organization0.00016730.0001606InformativeDirect
Biological Process (BP)regulation of nervous system development1.74e-060.0009496InformativeDirect
Biological Process (BP)regulation of apoptotic process0.00084820.01515InformativeInherited
Biological Process (BP)regulation of organelle organization0.042960.05586InformativeInherited
Biological Process (BP)intracellular signal transduction0.055910.00338InformativeInherited
Biological Process (BP)regulation of protein phosphorylation11InformativeInherited
Biological Process (BP)regulation of cell development1.787e-050.004353InformativeInherited
Biological Process (BP)negative regulation of protein metabolic process0.0035321.296e-05InformativeInherited
Biological Process (BP)negative regulation of cellular metabolic process0.0018980.0001372InformativeInherited
Biological Process (BP)central nervous system development0.004390.02173InformativeInherited
Biological Process (BP)cellular component movement0.023040.0942InformativeInherited
Biological Process (BP)locomotion1.152e-050.003075InformativeInherited
Biological Process (BP)localization of cell0.0073810.163InformativeInherited
Biological Process (BP)regulation of mitochondrion organization3.299e-102.314e-06Highly InformativeDirect
Biological Process (BP)telencephalon development1.369e-056.333e-05Highly InformativeDirect
Biological Process (BP)negative regulation of protein modification process0.00032596.734e-06Highly InformativeDirect
Biological Process (BP)regulation of neuron differentiation2.714e-070.0001249Highly InformativeDirect
Biological Process (BP)apoptotic signaling pathway3.884e-065.952e-05Highly InformativeDirect
Biological Process (BP)regulation of apoptotic signaling pathway9.625e-106.612e-09Highly InformativeDirect
Biological Process (BP)positive regulation of organelle organization7.961e-080.004059Highly InformativeInherited
Molecular Function (MF)binding6.715e-169.476e-13Least InformativeDirect
Molecular Function (MF)protein binding6.034e-060.0007173Moderately InformativeDirect
Cellular Component (CC)intracellular organelle part0.30240.6548Least InformativeInherited
Cellular Component (CC)membrane0.077270.02601Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.033370.0008381Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle2.482e-080.02425Least InformativeInherited
Cellular Component (CC)endomembrane system0.00011670.0009426Moderately InformativeDirect
Cellular Component (CC)vesicle0.00043570.001368Moderately InformativeInherited
Cellular Component (CC)organelle membrane0.0017550.003141Moderately InformativeInherited
Cellular Component (CC)cell junction0.0017590.003724InformativeInherited
Cellular Component (CC)cell-cell junction0.00051930.0004263Highly InformativeDirect
Cellular Component (CC)vesicle membrane3.169e-104.36e-08Highly InformativeDirect
Cellular Component (CC)cytoplasmic vesicle part6.097e-095.154e-07Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) developmental process 0.0007279 Least Informative Direct
Biological Process (BP) single-organism cellular process 4.802e-06 Least Informative Direct
Biological Process (BP) localization 1.945e-08 Least Informative Direct
Biological Process (BP) response to stimulus 0.006228 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.007389 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 0.6031 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.1925 Least Informative Inherited
Biological Process (BP) cell differentiation 2.02e-06 Moderately Informative Direct
Biological Process (BP) macromolecule localization 7.554e-09 Moderately Informative Direct
Biological Process (BP) regulation of protein metabolic process 0.0003273 Moderately Informative Direct
Biological Process (BP) cellular localization 4.951e-09 Moderately Informative Direct
Biological Process (BP) organic substance transport 4.844e-06 Moderately Informative Direct
Biological Process (BP) regulation of cell communication 0.3694 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 0.3056 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 0.995 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.08846 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 0.1112 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.3276 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 0.9195 Moderately Informative Inherited
Biological Process (BP) regulation of molecular function 0.004954 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 0.8879 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.009814 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.001272 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.7086 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.002214 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 0.02398 Moderately Informative Inherited
Biological Process (BP) apoptotic process 0.0005701 Informative Direct
Biological Process (BP) protein transport 1.047e-05 Informative Direct
Biological Process (BP) negative regulation of cellular metabolic process 0.0001372 Informative Direct
Biological Process (BP) regulation of intracellular transport 0.0001595 Informative Direct
Biological Process (BP) regulation of protein localization 0.000105 Informative Direct
Biological Process (BP) regulation of kinase activity 0.0006139 Informative Direct
Biological Process (BP) generation of neurons 3.497e-06 Informative Direct
Biological Process (BP) positive regulation of cellular component organization 0.0001606 Informative Direct
Biological Process (BP) negative regulation of protein metabolic process 1.296e-05 Informative Direct
Biological Process (BP) regulation of nervous system development 0.0009496 Informative Direct
Biological Process (BP) regulation of apoptotic process 0.01515 Informative Inherited
Biological Process (BP) regulation of organelle organization 0.05586 Informative Inherited
Biological Process (BP) intracellular signal transduction 0.00338 Informative Inherited
Biological Process (BP) regulation of protein phosphorylation 1 Informative Inherited
Biological Process (BP) regulation of cell development 0.004353 Informative Inherited
Biological Process (BP) regulation of cell cycle process 0.3464 Informative Inherited
Biological Process (BP) central nervous system development 0.02173 Informative Inherited
Biological Process (BP) cellular component movement 0.0942 Informative Inherited
Biological Process (BP) locomotion 0.003075 Informative Inherited
Biological Process (BP) localization of cell 0.163 Informative Inherited
Biological Process (BP) response to DNA damage stimulus 0.02464 Informative Inherited
Biological Process (BP) DNA damage checkpoint 1.407e-05 Highly Informative Direct
Biological Process (BP) regulation of mitochondrion organization 2.314e-06 Highly Informative Direct
Biological Process (BP) telencephalon development 6.333e-05 Highly Informative Direct
Biological Process (BP) negative regulation of protein modification process 6.734e-06 Highly Informative Direct
Biological Process (BP) regulation of neuron differentiation 0.0001249 Highly Informative Direct
Biological Process (BP) apoptotic signaling pathway 5.952e-05 Highly Informative Direct
Biological Process (BP) regulation of apoptotic signaling pathway 6.612e-09 Highly Informative Direct
Biological Process (BP) positive regulation of organelle organization 0.004059 Highly Informative Inherited
Molecular Function (MF) binding 9.476e-13 Least Informative Direct
Molecular Function (MF) protein binding 0.0007173 Moderately Informative Direct
Molecular Function (MF) enzyme regulator activity 0.001011 Moderately Informative Inherited
Molecular Function (MF) enzyme inhibitor activity 0.0009856 Informative Direct
Cellular Component (CC) cytoplasmic part 0.0008381 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.6548 Least Informative Inherited
Cellular Component (CC) membrane 0.02601 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.02425 Least Informative Inherited
Cellular Component (CC) endomembrane system 0.0009426 Moderately Informative Direct
Cellular Component (CC) vesicle 0.001368 Moderately Informative Inherited
Cellular Component (CC) organelle membrane 0.003141 Moderately Informative Inherited
Cellular Component (CC) cell junction 0.003724 Informative Inherited
Cellular Component (CC) cell-cell junction 0.0004263 Highly Informative Direct
Cellular Component (CC) vesicle membrane 4.36e-08 Highly Informative Direct
Cellular Component (CC) cytoplasmic vesicle part 5.154e-07 Highly Informative Direct

Document: GO annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0Least InformativeDirect
Disease Ontology (DO)nervous system cancer0Moderately InformativeDirect
Disease Ontology (DO)cognitive disorder0.000665Moderately InformativeDirect
Disease Ontology (DO)meningioma0InformativeDirect

Document: DO annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Least InformativeDirect
Xenopus ANatomical entity (XAN)portion of tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)ectoderm0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)surface structure0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)embryonic structure0.002902Moderately InformativeInherited
Xenopus ANatomical entity (XAN)skin0InformativeDirect
Xenopus ANatomical entity (XAN)fin0.0002167Highly InformativeDirect
Xenopus ANatomical entity (XAN)marginal zone0.0002254Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)seed development stage8.66e-08InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentCytoplasm1.801e-11Least InformativeDirect
Coding sequence diversityAlternative initiation6.335e-06Moderately InformativeDirect
Post-translational modificationPhosphoprotein9.053e-07Least InformativeDirect
Post-translational modificationAcetylation0Moderately InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000308 SSF48445 Protein matches
Abstract

The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [PubMed1671102, PubMed11911880]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides.

14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a 14-3-3 protein domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the 14-3-3 protein superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]