SUPERFAMILY 1.75 HMM library and genome assignments server


Ribosomal protein L7/12, oligomerisation (N-terminal) domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Ribosomal protein L7/12, oligomerisation (N-terminal) domain [ 48299]
Superfamily:   Ribosomal protein L7/12, oligomerisation (N-terminal) domain [ 48300]
Families:   Ribosomal protein L7/12, oligomerisation (N-terminal) domain [ 48301]


Superfamily statistics
Genomes (2,989) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 3,189 16,599 8
Proteins 3,189 16,599 8


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 2.306e-05 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.004462 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.00581 Least Informative Inherited
Biological Process (BP) gene expression 2.858e-09 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 1.069e-09 Moderately Informative Direct
Biological Process (BP) translation 9.739e-09 Informative Direct
Molecular Function (MF) structural molecule activity 4.04e-09 Moderately Informative Direct
Molecular Function (MF) structural constituent of ribosome 4.683e-12 Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 2.01e-06 Least Informative Direct
Cellular Component (CC) cytoplasmic part 2.889e-08 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0002921 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.5633 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 6.428e-12 Moderately Informative Direct
Cellular Component (CC) mitochondrial part 4.06e-07 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.1089 Moderately Informative Inherited
Cellular Component (CC) mitochondrial matrix 2.496e-14 Informative Direct
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) mitochondrial ribosome 9.908e-05 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR008932 SSF48300 Protein matches
Abstract

Ribosomal protein L7/12 consists of two domains that are connected by a flexible region. The N-terminal domain is required for dimer formation and for anchoring the protein to the ribosome by binding to ribosomal protein L10, while the C-terminal domain is required for translation factors binding [PubMed11231892].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L7/12, oligomerisation (N-terminal) domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Ribosomal protein L7/12, oligomerisation (N-terminal) domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]