SUPERFAMILY 1.75 HMM library and genome assignments server

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Cytochrome P450 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Cytochrome P450 [ 48263]
Superfamily:   Cytochrome P450 [ 48264]
Families:   Cytochrome P450 [ 48265] (22)


Superfamily statistics
Genomes (1,306) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 57,789 77,510 76
Proteins 56,410 76,848 76


Functional annotation
General category Metabolism
Detailed category Redox

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.0000000001130Least InformativeDirect
Biological Process (BP)single-organism metabolic process0.000000000000095750Least InformativeDirect
Biological Process (BP)organic cyclic compound metabolic process0.00034450Least InformativeDirect
Biological Process (BP)heterocycle metabolic process11Least InformativeInherited
Biological Process (BP)single-organism cellular process11Least InformativeInherited
Biological Process (BP)response to stimulus0.24811Least InformativeInherited
Biological Process (BP)regulation of metabolic process0.181Least InformativeInherited
Biological Process (BP)regulation of cellular process11Least InformativeInherited
Biological Process (BP)lipid biosynthetic process0.00000000038550Moderately InformativeDirect
Biological Process (BP)monocarboxylic acid metabolic process0.000000000026670Moderately InformativeDirect
Biological Process (BP)cellular lipid metabolic process0.000005050Moderately InformativeDirect
Biological Process (BP)single-organism biosynthetic process00Moderately InformativeDirect
Biological Process (BP)cellular response to chemical stimulus0.00000031850.00000005985Moderately InformativeDirect
Biological Process (BP)organic cyclic compound biosynthetic process0.0000014010Moderately InformativeDirect
Biological Process (BP)organic hydroxy compound metabolic process0.0000000000021430Moderately InformativeDirect
Biological Process (BP)regulation of developmental process0.000046661Moderately InformativeInherited
Biological Process (BP)heterocycle biosynthetic process0.060240.2103Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process0.042241Moderately InformativeInherited
Biological Process (BP)cellular response to stress0.0033411Moderately InformativeInherited
Biological Process (BP)response to abiotic stimulus0.0000024750.8776Moderately InformativeInherited
Biological Process (BP)response to organic substance0.020891Moderately InformativeInherited
Biological Process (BP)response to oxygen-containing compound11Moderately InformativeInherited
Biological Process (BP)regulation of gene expression0.003661Moderately InformativeInherited
Biological Process (BP)regulation of macromolecule biosynthetic process0.006241Moderately InformativeInherited
Biological Process (BP)regulation of nucleobase-containing compound metabolic process0.015891Moderately InformativeInherited
Biological Process (BP)regulation of cellular biosynthetic process0.000078781Moderately InformativeInherited
Biological Process (BP)regulation of multicellular organismal process0.00085031Moderately InformativeInherited
Biological Process (BP)negative regulation of metabolic process0.000036411Moderately InformativeInherited
Biological Process (BP)negative regulation of cellular process0.054531Moderately InformativeInherited
Biological Process (BP)positive regulation of response to stimulus0.00016391Moderately InformativeInherited
Biological Process (BP)regulation of signal transduction0.00068711Moderately InformativeInherited
Biological Process (BP)regulation of biological quality0.046970.0009353Moderately InformativeInherited
Biological Process (BP)organic cyclic compound catabolic process0.026790.8984Moderately InformativeInherited
Biological Process (BP)alcohol metabolic process0.0000000000095590InformativeDirect
Biological Process (BP)regulation of hormone levels0.0000016620InformativeDirect
Biological Process (BP)monocarboxylic acid biosynthetic process0.00000000011220.0001957InformativeDirect
Biological Process (BP)regulation of apoptotic process0.0000061811InformativeInherited
Biological Process (BP)response to cytokine stimulus0.00000077510.04129InformativeInherited
Biological Process (BP)cellular chemical homeostasis0.63521InformativeInherited
Biological Process (BP)cellular response to oxygen-containing compound0.99561InformativeInherited
Biological Process (BP)response to lipid0.94680.03684InformativeInherited
Biological Process (BP)response to organic cyclic compound0.74670.000003282InformativeInherited
Biological Process (BP)regulation of response to external stimulus0.0000000011220.001651InformativeInherited
Biological Process (BP)fatty acid metabolic process0.0015650.0000000001986InformativeInherited
Biological Process (BP)regulation of anatomical structure morphogenesis0.000028890.7619InformativeInherited
Biological Process (BP)positive regulation of developmental process0.00000000040330.4168InformativeInherited
Biological Process (BP)negative regulation of biosynthetic process0.00000040121InformativeInherited
Biological Process (BP)negative regulation of nitrogen compound metabolic process0.0000000017951InformativeInherited
Biological Process (BP)organic hydroxy compound biosynthetic process0.076110.00000000000002112InformativeInherited
Biological Process (BP)positive regulation of signal transduction0.00000040281InformativeInherited
Biological Process (BP)regulation of defense response0.0000000040920.1105InformativeInherited
Biological Process (BP)negative regulation of response to stimulus0.00000012270.7857InformativeInherited
Biological Process (BP)secondary metabolic process0.0032590InformativeInherited
Biological Process (BP)regulation of lipid metabolic process0.058960.2092InformativeInherited
Biological Process (BP)glycosyl compound biosynthetic process0.2230.02199InformativeInherited
Biological Process (BP)vitamin metabolic process0.3820.000000000005603InformativeInherited
Biological Process (BP)isoprenoid metabolic process0.24970.0000000001118InformativeInherited
Biological Process (BP)lipid catabolic process0.0020540.0000008252InformativeInherited
Biological Process (BP)response to hypoxia0.00000000000015590.00003556Highly InformativeDirect
Biological Process (BP)icosanoid metabolic process0.0000000000011320Highly InformativeDirect
Biological Process (BP)steroid biosynthetic process0.00000000043840Highly InformativeDirect
Biological Process (BP)steroid catabolic process0.0000000050760.0000000000001111Highly InformativeDirect
Biological Process (BP)xenobiotic metabolic process0.00000064720Highly InformativeDirect
Biological Process (BP)sterol metabolic process0.00019050.0000008729Highly InformativeDirect
Biological Process (BP)glycoside metabolic process0.000044960.000001022Highly InformativeDirect
Biological Process (BP)antibiotic biosynthetic process0.00000022080.000007335Highly InformativeDirect
Biological Process (BP)negative regulation of response to external stimulus00.0000004365Highly InformativeDirect
Biological Process (BP)unsaturated fatty acid metabolic process0.000000011730Highly InformativeDirect
Biological Process (BP)cellular hormone metabolic process0.00041860Highly InformativeDirect
Biological Process (BP)hormone biosynthetic process0.0000011090Highly InformativeDirect
Biological Process (BP)negative regulation of sequence-specific DNA binding transcription factor activity00.000000000002374Highly InformativeDirect
Biological Process (BP)regulation of nitric oxide biosynthetic process00.00000000000001083Highly InformativeDirect
Biological Process (BP)regulation of angiogenesis00.0000002905Highly InformativeDirect
Biological Process (BP)regulation of steroid biosynthetic process0.0001910.00001379Highly InformativeDirect
Biological Process (BP)fatty acid derivative biosynthetic process0.000000000000095750.00000000000001772Highly InformativeDirect
Biological Process (BP)response to alcohol0.57060.003106Highly InformativeInherited
Biological Process (BP)response to carbohydrate stimulus0.076650.3013Highly InformativeInherited
Biological Process (BP)carbohydrate homeostasis0.012490.2862Highly InformativeInherited
Biological Process (BP)regulation of cellular ketone metabolic process0.010280.1032Highly InformativeInherited
Biological Process (BP)alcohol biosynthetic process0.1420.00000004361Highly InformativeInherited
Biological Process (BP)polyol metabolic process11Highly InformativeInherited
Biological Process (BP)secondary metabolite biosynthetic process0.054990.000266Highly InformativeInherited
Molecular Function (MF)binding11Least InformativeInherited
Molecular Function (MF)oxidoreductase activity00Moderately InformativeDirect
Molecular Function (MF)isomerase activity0.0000003690.01009Moderately InformativeInherited
Molecular Function (MF)intramolecular oxidoreductase activity0.0000000000000039040.000000000000639InformativeDirect
Molecular Function (MF)tetrapyrrole binding00InformativeDirect
Molecular Function (MF)monooxygenase activity00Highly InformativeDirect
Molecular Function (MF)oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxyge00Highly InformativeDirect
Molecular Function (MF)heme binding00Highly InformativeDirect
Cellular Component (CC)membrane0.91341Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle11Least InformativeInherited
Cellular Component (CC)cytoplasmic part11Least InformativeInherited
Cellular Component (CC)endoplasmic reticulum0.0000000000048720Moderately InformativeDirect
Cellular Component (CC)plasma membrane0.38571Moderately InformativeInherited
Cellular Component (CC)membrane raft00.00005259Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0 Least Informative Direct
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) lipid biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) monocarboxylic acid metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular lipid metabolic process 0 Moderately Informative Direct
Biological Process (BP) single-organism biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) regulation of biological quality 0.0009353 Moderately Informative Direct
Biological Process (BP) cellular response to chemical stimulus 0.00000005985 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) organic hydroxy compound metabolic process 0 Moderately Informative Direct
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 1 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 0.8776 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 1 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 1 Moderately Informative Inherited
Biological Process (BP) regulation of macromolecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of signal transduction 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 0.2103 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 0.408 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cofactor metabolic process 0.2736 Moderately Informative Inherited
Biological Process (BP) positive regulation of response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) carbohydrate derivative metabolic process 1 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 1 Moderately Informative Inherited
Biological Process (BP) sulfur compound metabolic process 0.07496 Moderately Informative Inherited
Biological Process (BP) ion transport 1 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound catabolic process 0.8984 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound catabolic process 1 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 1 Moderately Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 1 Moderately Informative Inherited
Biological Process (BP) system process 1 Moderately Informative Inherited
Biological Process (BP) alcohol metabolic process 0 Informative Direct
Biological Process (BP) fatty acid metabolic process 0.0000000001986 Informative Direct
Biological Process (BP) isoprenoid metabolic process 0.0000000001118 Informative Direct
Biological Process (BP) vitamin metabolic process 0.000000000005603 Informative Direct
Biological Process (BP) regulation of hormone levels 0 Informative Direct
Biological Process (BP) response to organic cyclic compound 0.000003282 Informative Direct
Biological Process (BP) lipid catabolic process 0.0000008252 Informative Direct
Biological Process (BP) secondary metabolic process 0 Informative Direct
Biological Process (BP) cellular ketone metabolic process 0 Informative Direct
Biological Process (BP) monocarboxylic acid biosynthetic process 0.0001957 Informative Direct
Biological Process (BP) organic hydroxy compound biosynthetic process 0.00000000000002112 Informative Direct
Biological Process (BP) regulation of apoptotic process 1 Informative Inherited
Biological Process (BP) biological adhesion 1 Informative Inherited
Biological Process (BP) response to cytokine stimulus 0.04129 Informative Inherited
Biological Process (BP) cellular chemical homeostasis 1 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 1 Informative Inherited
Biological Process (BP) response to lipid 0.03684 Informative Inherited
Biological Process (BP) sensory organ development 1 Informative Inherited
Biological Process (BP) cardiovascular system development 1 Informative Inherited
Biological Process (BP) cation homeostasis 1 Informative Inherited
Biological Process (BP) negative regulation of cell communication 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 1 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 0.7619 Informative Inherited
Biological Process (BP) positive regulation of developmental process 0.4168 Informative Inherited
Biological Process (BP) coenzyme biosynthetic process 0.006502 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 1 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 1 Informative Inherited
Biological Process (BP) positive regulation of signal transduction 1 Informative Inherited
Biological Process (BP) carboxylic acid catabolic process 0.3576 Informative Inherited
Biological Process (BP) regulation of defense response 0.1105 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.7857 Informative Inherited
Biological Process (BP) regulation of response to external stimulus 0.001651 Informative Inherited
Biological Process (BP) cellular aldehyde metabolic process 0.009741 Informative Inherited
Biological Process (BP) phospholipid metabolic process 1 Informative Inherited
Biological Process (BP) regulation of lipid metabolic process 0.2092 Informative Inherited
Biological Process (BP) glycosyl compound biosynthetic process 0.02199 Informative Inherited
Biological Process (BP) sulfur compound biosynthetic process 0.4473 Informative Inherited
Biological Process (BP) anion transport 1 Informative Inherited
Biological Process (BP) nitrogen compound transport 1 Informative Inherited
Biological Process (BP) cellular component morphogenesis 1 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 1 Informative Inherited
Biological Process (BP) response to inorganic substance 0.6527 Informative Inherited
Biological Process (BP) response to other organism 1 Informative Inherited
Biological Process (BP) cellular biogenic amine metabolic process 1 Informative Inherited
Biological Process (BP) regulation of body fluid levels 0.02041 Informative Inherited
Biological Process (BP) blood circulation 0.001337 Informative Inherited
Biological Process (BP) response to hypoxia 0.00003556 Highly Informative Direct
Biological Process (BP) tryptophan metabolic process 0.000007958 Highly Informative Direct
Biological Process (BP) icosanoid metabolic process 0 Highly Informative Direct
Biological Process (BP) steroid biosynthetic process 0 Highly Informative Direct
Biological Process (BP) steroid catabolic process 0.0000000000001111 Highly Informative Direct
Biological Process (BP) xenobiotic metabolic process 0 Highly Informative Direct
Biological Process (BP) regulation of blood pressure 0.00001268 Highly Informative Direct
Biological Process (BP) isoprenoid biosynthetic process 0.000003728 Highly Informative Direct
Biological Process (BP) toxin metabolic process 0 Highly Informative Direct
Biological Process (BP) response to toxic substance 0.00004725 Highly Informative Direct
Biological Process (BP) phenylpropanoid metabolic process 0.000001191 Highly Informative Direct
Biological Process (BP) sterol metabolic process 0.0000008729 Highly Informative Direct
Biological Process (BP) glycoside metabolic process 0.000001022 Highly Informative Direct
Biological Process (BP) antibiotic biosynthetic process 0.000007335 Highly Informative Direct
Biological Process (BP) negative regulation of response to external stimulus 0.0000004365 Highly Informative Direct
Biological Process (BP) unsaturated fatty acid metabolic process 0 Highly Informative Direct
Biological Process (BP) cellular hormone metabolic process 0 Highly Informative Direct
Biological Process (BP) quinone cofactor metabolic process 0.00000001073 Highly Informative Direct
Biological Process (BP) cellular biogenic amine catabolic process 0.00036 Highly Informative Direct
Biological Process (BP) indole-containing compound biosynthetic process 0.0000413 Highly Informative Direct
Biological Process (BP) hormone biosynthetic process 0 Highly Informative Direct
Biological Process (BP) negative regulation of sequence-specific DNA binding transcription factor activity 0.000000000002374 Highly Informative Direct
Biological Process (BP) secondary metabolite biosynthetic process 0.000266 Highly Informative Direct
Biological Process (BP) regulation of nitric oxide biosynthetic process 0.00000000000001083 Highly Informative Direct
Biological Process (BP) regulation of angiogenesis 0.0000002905 Highly Informative Direct
Biological Process (BP) alcohol biosynthetic process 0.00000004361 Highly Informative Direct
Biological Process (BP) regulation of steroid biosynthetic process 0.00001379 Highly Informative Direct
Biological Process (BP) regulation of coagulation 0.0000519 Highly Informative Direct
Biological Process (BP) monovalent inorganic cation homeostasis 0.0002013 Highly Informative Direct
Biological Process (BP) regulation of wound healing 0.0005058 Highly Informative Direct
Biological Process (BP) regulation of hemostasis 0.00003203 Highly Informative Direct
Biological Process (BP) fatty acid derivative biosynthetic process 0.00000000000001772 Highly Informative Direct
Biological Process (BP) cell adhesion 1 Highly Informative Inherited
Biological Process (BP) response to alcohol 0.003106 Highly Informative Inherited
Biological Process (BP) response to carbohydrate stimulus 0.3013 Highly Informative Inherited
Biological Process (BP) carbohydrate homeostasis 0.2862 Highly Informative Inherited
Biological Process (BP) regulation of cellular ketone metabolic process 0.1032 Highly Informative Inherited
Biological Process (BP) retina development in camera-type eye 0.2068 Highly Informative Inherited
Biological Process (BP) response to drug 0.01118 Highly Informative Inherited
Biological Process (BP) quinone biosynthetic process 1 Highly Informative Inherited
Biological Process (BP) polyol metabolic process 1 Highly Informative Inherited
Biological Process (BP) fatty acid catabolic process 1 Highly Informative Inherited
Biological Process (BP) retinoid metabolic process 1 Highly Informative Inherited
Biological Process (BP) negative regulation of multicellular organismal process 0.6916 Highly Informative Inherited
Biological Process (BP) inorganic anion transport 0.1993 Highly Informative Inherited
Biological Process (BP) cellular component assembly involved in morphogenesis 0.9688 Highly Informative Inherited
Biological Process (BP) external encapsulating structure organization 0.05301 Highly Informative Inherited
Biological Process (BP) lipid modification 1 Highly Informative Inherited
Biological Process (BP) post-embryonic development 0.6511 Highly Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) oxidoreductase activity 0 Moderately Informative Direct
Molecular Function (MF) isomerase activity 0.01009 Moderately Informative Inherited
Molecular Function (MF) intramolecular oxidoreductase activity 0.000000000000639 Informative Direct
Molecular Function (MF) tetrapyrrole binding 0 Informative Direct
Molecular Function (MF) oxidoreductase activity, acting on CH-OH group of donors 1 Informative Inherited
Molecular Function (MF) monooxygenase activity 0 Highly Informative Direct
Molecular Function (MF) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxyge 0 Highly Informative Direct
Molecular Function (MF) heme binding 0 Highly Informative Direct
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) endoplasmic reticulum 0 Moderately Informative Direct
Cellular Component (CC) endomembrane system 0.000003343 Moderately Informative Direct
Cellular Component (CC) plasma membrane 1 Moderately Informative Inherited
Cellular Component (CC) organelle membrane 0.04187 Moderately Informative Inherited
Cellular Component (CC) endoplasmic reticulum membrane 0 Informative Direct
Cellular Component (CC) membrane raft 0.00005259 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Isomerases1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Acting on paired donors, with incorporation or red0Moderately InformativeDirect
Enzyme Commission (EC)Intramolecular oxidoreductases0.7611Moderately InformativeInherited
Enzyme Commission (EC)Hydro-lyases1Moderately InformativeInherited
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor1Moderately InformativeInherited
Enzyme Commission (EC)Miscellaneous (requires further characterization)1InformativeInherited
Enzyme Commission (EC)With NADH or NADPH as one donor, and incorporation0.02235InformativeInherited
Enzyme Commission (EC)Other intramolecular oxidoreductases0Highly InformativeDirect
Enzyme Commission (EC)With reduced flavin or flavoprotein as one donor, 0Highly InformativeDirect
Enzyme Commission (EC)With a reduced iron-sulfur protein as one donor, a0.00000001495Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)endocrine system disease0.02104Moderately InformativeInherited
Disease Ontology (DO)artery disease0.1135Moderately InformativeInherited
Disease Ontology (DO)connective tissue disease0.193Moderately InformativeInherited
Disease Ontology (DO)physical disorder0.03835InformativeInherited
Disease Ontology (DO)coronary artery disease0.5883InformativeInherited
Disease Ontology (DO)hypospadias0.00005825Highly InformativeDirect
Disease Ontology (DO)bone resorption disease0.0001191Highly InformativeDirect
Disease Ontology (DO)hyperandrogenism0.0002124Highly InformativeDirect
Disease Ontology (DO)thoracic disease0.000388Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Puberty and gonadal disorders0.07053InformativeInherited
Phenotypic Abnormality (PA)Adrenogenital syndrome0.000007977Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cardiovascular system phenotype0.3347Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.8382Least InformativeInherited
Mammalian Phenotype (MP)abnormal lipid homeostasis0.01089Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal reproductive system morphology0.1022Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal metabolism0.171Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular system physiology0.2034Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hormone level0.3302Moderately InformativeInherited
Mammalian Phenotype (MP)digestive/alimentary phenotype0.5866Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal systemic arterial blood pressure0.00001499InformativeDirect
Mammalian Phenotype (MP)abnormal internal female genitalia morphology0.08298InformativeInherited
Mammalian Phenotype (MP)abnormal digestive system physiology0.4329InformativeInherited
Mammalian Phenotype (MP)abnormal xenobiotic pharmacokinetics0.00003083Highly InformativeDirect
Mammalian Phenotype (MP)abnormal fat-soluble vitamin level0.0003747Highly InformativeDirect
Mammalian Phenotype (MP)abnormal uterus morphology0.006863Highly InformativeInherited
Mammalian Phenotype (MP)abnormal circulating aldosterone level0.7063Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.2164Least InformativeInherited
Worm Phenotype (WP)metal response variant0.0001096InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system subdivision0.04044Least InformativeInherited
Fly Anatomy (FA)anatomical group0.1121Least InformativeInherited
Fly Anatomy (FA)multi-tissue structure0.2508Least InformativeInherited
Fly Anatomy (FA)organ system0.2586Least InformativeInherited
Fly Anatomy (FA)cell0.5662Least InformativeInherited
Fly Anatomy (FA)larva0.5952Least InformativeInherited
Fly Anatomy (FA)anterior-posterior subdivision of organism1Least InformativeInherited
Fly Anatomy (FA)acellular anatomical structure0.004317Moderately InformativeInherited
Fly Anatomy (FA)multi-cell-component structure0.01231Moderately InformativeInherited
Fly Anatomy (FA)epithelium0.03223Moderately InformativeInherited
Fly Anatomy (FA)central nervous system0.1318Moderately InformativeInherited
Fly Anatomy (FA)developing material anatomical entity0.3653Moderately InformativeInherited
Fly Anatomy (FA)late embryo0.5199Moderately InformativeInherited
Fly Anatomy (FA)commissure0.000006607InformativeDirect
Fly Anatomy (FA)midgut0.00002342InformativeDirect
Fly Anatomy (FA)alimentary canal0.0001636InformativeDirect
Fly Anatomy (FA)cuboidal/columnar epithelium0.0006347InformativeDirect
Fly Anatomy (FA)embryonic/larval digestive system0.001397InformativeInherited
Fly Anatomy (FA)embryonic/larval integumentary system0.00921InformativeInherited
Fly Anatomy (FA)primordium0.02103InformativeInherited
Fly Anatomy (FA)embryonic/larval central nervous system0.1108InformativeInherited
Fly Anatomy (FA)hindgut0.000002196Highly InformativeDirect
Fly Anatomy (FA)neuropil glial sheath0.000003406Highly InformativeDirect
Fly Anatomy (FA)presumptive embryonic/larval central nervous system0.00001037Highly InformativeDirect
Fly Anatomy (FA)midgut primordium0.00007208Highly InformativeDirect
Fly Anatomy (FA)embryonic epidermis0.0001064Highly InformativeDirect
Fly Anatomy (FA)embryonic head0.0003994Highly InformativeDirect
Fly Anatomy (FA)CNS glial cell0.000639Highly InformativeDirect
Fly Anatomy (FA)embryonic/first instar larval cuticle0.000856Highly InformativeDirect

Document: FA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)fruit0.01248InformativeInherited

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Carbon-carbon lyases0.1428Moderately InformativeInherited
Enzyme Commission (EC)Acting on the CH-OH group of donors1Moderately InformativeInherited
Enzyme Commission (EC)Carbon-oxygen lyases1Moderately InformativeInherited
Enzyme Commission (EC)Isomerases1Moderately InformativeInherited
Enzyme Commission (EC)Acting on paired donors, with incorporation or reduction of molecular oxygen0InformativeDirect
Enzyme Commission (EC)Intramolecular oxidoreductases0.9153InformativeInherited
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor1InformativeInherited
Enzyme Commission (EC)Acting on single donors with incorporation of molecular oxygen1InformativeInherited
Enzyme Commission (EC)Acting on NADH or NADPH1InformativeInherited
Enzyme Commission (EC)Intramolecular transferases (mutases)1InformativeInherited
Enzyme Commission (EC)With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen0Highly InformativeDirect
Enzyme Commission (EC)Other intramolecular oxidoreductases0Highly InformativeDirect
Enzyme Commission (EC)Aldehyde-lyases4.824e-16Highly InformativeDirect
Enzyme Commission (EC)With a heme protein as acceptor0.00008286Highly InformativeDirect
Enzyme Commission (EC)With NADH or NADPH as one donor, and incorporation of one atom of oxygen0.00184Highly InformativeInherited
Enzyme Commission (EC)With incorporation of two atoms of oxygen0.01658Highly InformativeInherited
Enzyme Commission (EC)Miscellaneous (requires further characterization)1Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processLipid metabolism0Moderately InformativeDirect
Biological processSteroid metabolism0InformativeDirect
Biological processFatty acid metabolism1InformativeInherited
Biological processLipid biosynthesis1InformativeInherited
Biological processProstaglandin biosynthesis0Highly InformativeDirect
Biological processSteroid biosynthesis0Highly InformativeDirect
Biological processGrowth regulation0.00000000008284Highly InformativeDirect
Biological processAntibiotic biosynthesis0.000000003528Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentEndoplasmic reticulum0Moderately InformativeDirect
Cellular componentMicrosome0Highly InformativeDirect
Coding sequence diversityPolymorphism0.000004147Moderately InformativeDirect
DiseaseDisease mutation0.0001163Least InformativeDirect
DomainTransmembrane0Least InformativeDirect
DomainTransit peptide0.0000005253Moderately InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionIron0Moderately InformativeDirect
Molecular functionHeme0InformativeDirect
Molecular functionNADP0InformativeDirect
Molecular functionLipid-binding0.3712InformativeInherited
Molecular functionSteroid-binding0.000000005079Highly InformativeDirect
Post-translational modificationOxidoreductase0Moderately InformativeDirect
Post-translational modificationMonooxygenase0Highly InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)hormone metabolism0Moderately InformativeDirect
UniPathway (UP)secondary metabolite metabolism0Moderately InformativeDirect
UniPathway (UP)antibiotic biosynthesis0.0000001245Moderately InformativeDirect
UniPathway (UP)aromatic compound biosynthesis0.00001472Moderately InformativeDirect
UniPathway (UP)nitrogen metabolism0.0003124Moderately InformativeDirect
UniPathway (UP)pigment metabolism0.0288Moderately InformativeInherited
UniPathway (UP)fatty acid metabolism1Moderately InformativeInherited
UniPathway (UP)lipid biosynthesis1Moderately InformativeInherited
UniPathway (UP)steroid metabolism0InformativeDirect
UniPathway (UP)polyol metabolism0InformativeDirect
UniPathway (UP)alkaloid metabolism0.0000000004871InformativeDirect
UniPathway (UP)toxin biosynthesis0.00001631InformativeDirect
UniPathway (UP)hormone biosynthesis0.005394InformativeInherited
UniPathway (UP)terpene biosynthesis0.0225InformativeInherited
UniPathway (UP)flavonoid biosynthesis1InformativeInherited
UniPathway (UP)plant hormone biosynthesis1InformativeInherited
UniPathway (UP)anthocyanin biosynthesis0.00000000003077Highly InformativeDirect
UniPathway (UP)leukotriene metabolism0.0000000001376Highly InformativeDirect
UniPathway (UP)monoterpene degradation0.00000006242Highly InformativeDirect
UniPathway (UP)benzoxazinone biosynthesis0.000002387Highly InformativeDirect
UniPathway (UP)mycotoxin biosynthesis0.000002584Highly InformativeDirect
UniPathway (UP)plant hormone degradation0.00001623Highly InformativeDirect
UniPathway (UP)steroid hormone biosynthesis0.9165Highly InformativeInherited

Document: UP annotation of SCOP domains

InterPro annotation
Cross references IPR001128 SSF48264 Protein matches
Abstract

More information about these proteins can be found at Protein of the Month: Cytochrome P450.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 23 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Cytochrome P450 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 23 hidden Markov models representing the Cytochrome P450 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]