SUPERFAMILY 1.75 HMM library and genome assignments server


DEATH domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DEATH domain [ 47985]
Superfamily:   DEATH domain [ 47986] (4)
Families:   DEATH domain, DD [ 81312] (8)
  DEATH effector domain, DED [ 81388] (2)
  Caspase recruitment domain, CARD [ 81313] (5)
  Pyrin domain, PYD [ 101298] (2)


Superfamily statistics
Genomes (141) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 9,881 9,865 25
Proteins 8,717 8,797 25


Functional annotation
General category Processes_IC
Detailed category Cell cycle, Apoptosis

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)response to stimulus1.976e-070Least InformativeDirect
Biological Process (BP)regulation of cellular process4.387e-073.585e-05Least InformativeDirect
Biological Process (BP)single-organism cellular process1.958e-050Least InformativeDirect
Biological Process (BP)regulation of metabolic process0.67471Least InformativeInherited
Biological Process (BP)positive regulation of cellular process2.498e-110Moderately InformativeDirect
Biological Process (BP)regulation of multicellular organismal process2.109e-054.897e-10Moderately InformativeDirect
Biological Process (BP)regulation of localization0.00010829.688e-11Moderately InformativeDirect
Biological Process (BP)regulation of cellular biosynthetic process0.0019250.0001151Moderately InformativeInherited
Biological Process (BP)regulation of nucleobase-containing compound metabolic process0.0023770.0464Moderately InformativeInherited
Biological Process (BP)regulation of macromolecule biosynthetic process0.12970.07233Moderately InformativeInherited
Biological Process (BP)regulation of gene expression0.00021660.002695Moderately InformativeInherited
Biological Process (BP)regulation of signal transduction5.555e-061Moderately InformativeInherited
Biological Process (BP)positive regulation of response to stimulus0.089960Moderately InformativeInherited
Biological Process (BP)regulation of establishment of protein localization1.722e-090InformativeDirect
Biological Process (BP)positive regulation of signal transduction1.354e-070.000438InformativeDirect
Biological Process (BP)positive regulation of multicellular organismal process1.031e-060InformativeDirect
Biological Process (BP)regulation of cytokine production7.062e-060InformativeDirect
Biological Process (BP)defense response8.18e-050InformativeDirect
Biological Process (BP)regulation of apoptotic process0.00027880.000134InformativeDirect
Biological Process (BP)positive regulation of transport0.00015210.006295InformativeInherited
Biological Process (BP)regulation of secretion0.028530.08618InformativeInherited
Biological Process (BP)positive regulation of cytokine production00Highly InformativeDirect
Biological Process (BP)regulation of interleukin-1 beta production4.194e-140Highly InformativeDirect
Biological Process (BP)positive regulation of protein secretion5.34e-061.564e-13Highly InformativeDirect
Biological Process (BP)regulation of cytokine secretion0.0030890.002473Highly InformativeInherited
Molecular Function (MF)binding0.00012750Least InformativeDirect
Molecular Function (MF)nucleic acid binding0.00018381Moderately InformativeInherited
Molecular Function (MF)DNA binding1.279e-050.5651InformativeInherited
Molecular Function (MF)structure-specific DNA binding6.218e-080.05455Highly InformativeInherited
Cellular Component (CC)protein complex0.00061030Least InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) regulation of cellular process 3.585e-05 Least Informative Direct
Biological Process (BP) single-organism cellular process 0 Least Informative Direct
Biological Process (BP) multicellular organismal process 0 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0 Least Informative Direct
Biological Process (BP) developmental process 0 Least Informative Direct
Biological Process (BP) protein metabolic process 1.576e-06 Least Informative Direct
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) positive regulation of cellular process 0 Moderately Informative Direct
Biological Process (BP) regulation of multicellular organismal process 4.897e-10 Moderately Informative Direct
Biological Process (BP) regulation of localization 9.688e-11 Moderately Informative Direct
Biological Process (BP) regulation of cellular biosynthetic process 0.0001151 Moderately Informative Direct
Biological Process (BP) immune system process 0 Moderately Informative Direct
Biological Process (BP) regulation of protein metabolic process 8.691e-07 Moderately Informative Direct
Biological Process (BP) signal transduction 5.489e-13 Moderately Informative Direct
Biological Process (BP) positive regulation of response to stimulus 0 Moderately Informative Direct
Biological Process (BP) multi-organism process 0 Moderately Informative Direct
Biological Process (BP) regulation of catalytic activity 5.109e-11 Moderately Informative Direct
Biological Process (BP) positive regulation of molecular function 1.167e-08 Moderately Informative Direct
Biological Process (BP) regulation of phosphate metabolic process 5.893e-07 Moderately Informative Direct
Biological Process (BP) macromolecule localization 1.006e-05 Moderately Informative Direct
Biological Process (BP) homeostatic process 5.331e-05 Moderately Informative Direct
Biological Process (BP) nervous system development 0.0006411 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.02151 Moderately Informative Inherited
Biological Process (BP) cellular localization 1 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.06644 Moderately Informative Inherited
Biological Process (BP) reproduction 1 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 1 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.4517 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.0464 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.002695 Moderately Informative Inherited
Biological Process (BP) regulation of macromolecule biosynthetic process 0.07233 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.1052 Moderately Informative Inherited
Biological Process (BP) organ development 0.727 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.009961 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 0.02354 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 0.06083 Moderately Informative Inherited
Biological Process (BP) regulation of signal transduction 1 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 0.4635 Moderately Informative Inherited
Biological Process (BP) cell differentiation 0.02574 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) ion transport 0.9562 Moderately Informative Inherited
Biological Process (BP) organic substance transport 0.002784 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) system process 1 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 0.9981 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cofactor metabolic process 0.1095 Moderately Informative Inherited
Biological Process (BP) cellular lipid metabolic process 1 Moderately Informative Inherited
Biological Process (BP) monocarboxylic acid metabolic process 1 Moderately Informative Inherited
Biological Process (BP) tissue development 1 Moderately Informative Inherited
Biological Process (BP) regulation of establishment of protein localization 0 Informative Direct
Biological Process (BP) positive regulation of signal transduction 0.000438 Informative Direct
Biological Process (BP) positive regulation of multicellular organismal process 0 Informative Direct
Biological Process (BP) regulation of cytokine production 0 Informative Direct
Biological Process (BP) defense response 0 Informative Direct
Biological Process (BP) regulation of apoptotic process 0.000134 Informative Direct
Biological Process (BP) response to cytokine stimulus 0 Informative Direct
Biological Process (BP) immune response 0 Informative Direct
Biological Process (BP) intracellular signal transduction 0.0002599 Informative Direct
Biological Process (BP) regulation of peptidase activity 0 Informative Direct
Biological Process (BP) positive regulation of immune system process 0 Informative Direct
Biological Process (BP) regulation of immune response 0 Informative Direct
Biological Process (BP) response to other organism 0 Informative Direct
Biological Process (BP) generation of neurons 0 Informative Direct
Biological Process (BP) regulation of defense response 3.752e-15 Informative Direct
Biological Process (BP) protein complex assembly 8.785e-14 Informative Direct
Biological Process (BP) locomotion 1.824e-13 Informative Direct
Biological Process (BP) regulation of intracellular protein kinase cascade 2.502e-11 Informative Direct
Biological Process (BP) hematopoietic or lymphoid organ development 3.943e-10 Informative Direct
Biological Process (BP) cellular component morphogenesis 3.42e-09 Informative Direct
Biological Process (BP) regulation of cellular component movement 2.726e-08 Informative Direct
Biological Process (BP) cell projection organization 1.726e-07 Informative Direct
Biological Process (BP) positive regulation of phosphate metabolic process 2.234e-07 Informative Direct
Biological Process (BP) regulation of locomotion 2.745e-07 Informative Direct
Biological Process (BP) protein transport 1.635e-06 Informative Direct
Biological Process (BP) negative regulation of cell death 4.143e-06 Informative Direct
Biological Process (BP) blood circulation 9.799e-06 Informative Direct
Biological Process (BP) positive regulation of hydrolase activity 2.83e-05 Informative Direct
Biological Process (BP) muscle system process 4.539e-05 Informative Direct
Biological Process (BP) positive regulation of protein modification process 0.0001414 Informative Direct
Biological Process (BP) proteolysis 0.0001801 Informative Direct
Biological Process (BP) regulation of immune effector process 0.0004815 Informative Direct
Biological Process (BP) regulation of ion transport 0.8833 Informative Inherited
Biological Process (BP) regulation of nervous system development 0.1899 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 1 Informative Inherited
Biological Process (BP) negative regulation of gene expression 1 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 1 Informative Inherited
Biological Process (BP) apoptotic process 0.1288 Informative Inherited
Biological Process (BP) regulation of response to external stimulus 0.06941 Informative Inherited
Biological Process (BP) cellular membrane organization 0.1945 Informative Inherited
Biological Process (BP) tube development 0.307 Informative Inherited
Biological Process (BP) tissue morphogenesis 0.8227 Informative Inherited
Biological Process (BP) cellular response to endogenous stimulus 1 Informative Inherited
Biological Process (BP) response to organonitrogen compound 0.01323 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 0.07467 Informative Inherited
Biological Process (BP) cellular response to nitrogen compound 0.801 Informative Inherited
Biological Process (BP) multi-multicellular organism process 0.995 Informative Inherited
Biological Process (BP) positive regulation of developmental process 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 0.001798 Informative Inherited
Biological Process (BP) negative regulation of cell communication 0.007666 Informative Inherited
Biological Process (BP) regulation of system process 1 Informative Inherited
Biological Process (BP) synaptic transmission 0.7821 Informative Inherited
Biological Process (BP) regulation of vesicle-mediated transport 0.6461 Informative Inherited
Biological Process (BP) positive regulation of transport 0.006295 Informative Inherited
Biological Process (BP) regulation of secretion 0.08618 Informative Inherited
Biological Process (BP) muscle structure development 0.001093 Informative Inherited
Biological Process (BP) muscle tissue development 0.00352 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 1 Informative Inherited
Biological Process (BP) phosphorylation 0.08476 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 0.2998 Informative Inherited
Biological Process (BP) single organism reproductive process 1 Informative Inherited
Biological Process (BP) regulation of cell proliferation 0.02949 Informative Inherited
Biological Process (BP) positive regulation of cellular component organization 0.9963 Informative Inherited
Biological Process (BP) response to organic cyclic compound 1 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 1 Informative Inherited
Biological Process (BP) organ morphogenesis 1 Informative Inherited
Biological Process (BP) negative regulation of protein metabolic process 0.5761 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 0.05189 Informative Inherited
Biological Process (BP) positive regulation of macromolecule biosynthetic process 0.3341 Informative Inherited
Biological Process (BP) cellular component movement 0.01022 Informative Inherited
Biological Process (BP) localization of cell 0.7429 Informative Inherited
Biological Process (BP) cellular process involved in reproduction 1 Informative Inherited
Biological Process (BP) positive regulation of nitrogen compound metabolic process 0.2636 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.755 Informative Inherited
Biological Process (BP) response to nutrient levels 0.4519 Informative Inherited
Biological Process (BP) response to lipid 0.005332 Informative Inherited
Biological Process (BP) leukocyte activation 0.4346 Informative Inherited
Biological Process (BP) response to light stimulus 0.211 Informative Inherited
Biological Process (BP) secretion by cell 0.9724 Informative Inherited
Biological Process (BP) response to DNA damage stimulus 0.2424 Informative Inherited
Biological Process (BP) regulation of cell development 0.02063 Informative Inherited
Biological Process (BP) regulation of cellular component biogenesis 0.5193 Informative Inherited
Biological Process (BP) regulation of growth 0.2577 Informative Inherited
Biological Process (BP) single-organism behavior 0.02366 Informative Inherited
Biological Process (BP) regulation of protein phosphorylation 0.09502 Informative Inherited
Biological Process (BP) regulation of kinase activity 0.988 Informative Inherited
Biological Process (BP) fatty acid metabolic process 0.524 Informative Inherited
Biological Process (BP) immune effector process 1 Informative Inherited
Biological Process (BP) developmental process involved in reproduction 1 Informative Inherited
Biological Process (BP) embryonic morphogenesis 1 Informative Inherited
Biological Process (BP) embryo development ending in birth or egg hatching 0.01147 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 1 Informative Inherited
Biological Process (BP) epithelium development 1 Informative Inherited
Biological Process (BP) positive regulation of cytokine production 0 Highly Informative Direct
Biological Process (BP) regulation of interleukin-1 beta production 0 Highly Informative Direct
Biological Process (BP) positive regulation of protein secretion 1.564e-13 Highly Informative Direct
Biological Process (BP) positive regulation of apoptotic signaling pathway 1.936e-15 Highly Informative Direct
Biological Process (BP) cell morphogenesis involved in neuron differentiation 0 Highly Informative Direct
Biological Process (BP) positive regulation of defense response 0 Highly Informative Direct
Biological Process (BP) cellular response to biotic stimulus 0 Highly Informative Direct
Biological Process (BP) positive regulation of sequence-specific DNA binding transcription factor activity 0 Highly Informative Direct
Biological Process (BP) response to lipopolysaccharide 0 Highly Informative Direct
Biological Process (BP) regulation of mononuclear cell proliferation 0 Highly Informative Direct
Biological Process (BP) positive regulation of leukocyte proliferation 0 Highly Informative Direct
Biological Process (BP) cell projection morphogenesis 0 Highly Informative Direct
Biological Process (BP) execution phase of apoptosis 0 Highly Informative Direct
Biological Process (BP) extrinsic apoptotic signaling pathway 0 Highly Informative Direct
Biological Process (BP) regulation of cell killing 2.288e-14 Highly Informative Direct
Biological Process (BP) heart contraction 4.472e-13 Highly Informative Direct
Biological Process (BP) striated muscle contraction 1.683e-12 Highly Informative Direct
Biological Process (BP) positive regulation of cell activation 2.226e-12 Highly Informative Direct
Biological Process (BP) positive regulation of endopeptidase activity 3.58e-12 Highly Informative Direct
Biological Process (BP) regulation of cysteine-type endopeptidase activity involved in apoptotic process 3.736e-10 Highly Informative Direct
Biological Process (BP) regulation of toll-like receptor signaling pathway 1.523e-09 Highly Informative Direct
Biological Process (BP) leukocyte homeostasis 2.556e-09 Highly Informative Direct
Biological Process (BP) regulation of cytokine biosynthetic process 7.858e-09 Highly Informative Direct
Biological Process (BP) axon development 8.269e-09 Highly Informative Direct
Biological Process (BP) cytokine-mediated signaling pathway 1.412e-08 Highly Informative Direct
Biological Process (BP) regulation of striated muscle tissue development 3.855e-08 Highly Informative Direct
Biological Process (BP) hair follicle development 8.235e-08 Highly Informative Direct
Biological Process (BP) porphyrin-containing compound biosynthetic process 9.174e-08 Highly Informative Direct
Biological Process (BP) regulation of transmembrane transport 2.686e-07 Highly Informative Direct
Biological Process (BP) chemotaxis 4.839e-07 Highly Informative Direct
Biological Process (BP) regulation of membrane potential 7.276e-07 Highly Informative Direct
Biological Process (BP) defense response to bacterium 7.931e-07 Highly Informative Direct
Biological Process (BP) learning or memory 2.047e-06 Highly Informative Direct
Biological Process (BP) negative regulation of multicellular organismal process 3.026e-06 Highly Informative Direct
Biological Process (BP) regulation of transporter activity 4.068e-06 Highly Informative Direct
Biological Process (BP) regulation of innate immune response 4.602e-06 Highly Informative Direct
Biological Process (BP) positive regulation of adaptive immune response 1.486e-05 Highly Informative Direct
Biological Process (BP) myeloid cell development 2.627e-05 Highly Informative Direct
Biological Process (BP) positive regulation of leukocyte mediated immunity 2.939e-05 Highly Informative Direct
Biological Process (BP) regulation of lymphocyte migration 5.747e-05 Highly Informative Direct
Biological Process (BP) regulation of multi-organism process 0.0001261 Highly Informative Direct
Biological Process (BP) stress-activated protein kinase signaling cascade 0.0001511 Highly Informative Direct
Biological Process (BP) response to UV 0.0002363 Highly Informative Direct
Biological Process (BP) morphogenesis of embryonic epithelium 0.0003653 Highly Informative Direct
Biological Process (BP) regulation of cellular response to stress 0.0005025 Highly Informative Direct
Biological Process (BP) T cell differentiation 0.0005279 Highly Informative Direct
Biological Process (BP) negative regulation of sequence-specific DNA binding transcription factor activity 0.0006002 Highly Informative Direct
Biological Process (BP) monovalent inorganic cation transport 0.0008536 Highly Informative Direct
Biological Process (BP) epithelial tube formation 0.0008743 Highly Informative Direct
Biological Process (BP) positive regulation of cell migration 0.3677 Highly Informative Inherited
Biological Process (BP) negative regulation of transcription, DNA-dependent 1 Highly Informative Inherited
Biological Process (BP) regulation of synaptic transmission 0.1856 Highly Informative Inherited
Biological Process (BP) regulation of behavior 1 Highly Informative Inherited
Biological Process (BP) cellular response to peptide 0.689 Highly Informative Inherited
Biological Process (BP) negative regulation of apoptotic process 1 Highly Informative Inherited
Biological Process (BP) cell-type specific apoptotic process 0.1529 Highly Informative Inherited
Biological Process (BP) female pregnancy 0.001751 Highly Informative Inherited
Biological Process (BP) sensory perception 0.004866 Highly Informative Inherited
Biological Process (BP) negative regulation of cell activation 0.04808 Highly Informative Inherited
Biological Process (BP) immune response-regulating cell surface receptor signaling pathway 0.1205 Highly Informative Inherited
Biological Process (BP) regulation of endocytosis 0.001097 Highly Informative Inherited
Biological Process (BP) regulation of cytokine secretion 0.002473 Highly Informative Inherited
Biological Process (BP) erythrocyte differentiation 0.01735 Highly Informative Inherited
Biological Process (BP) muscle fiber development 0.003637 Highly Informative Inherited
Biological Process (BP) regulation of developmental growth 0.02069 Highly Informative Inherited
Biological Process (BP) cellular response to growth factor stimulus 1 Highly Informative Inherited
Biological Process (BP) transmembrane receptor protein tyrosine kinase signaling pathway 1 Highly Informative Inherited
Biological Process (BP) protein phosphorylation 0.0168 Highly Informative Inherited
Biological Process (BP) placenta development 0.09807 Highly Informative Inherited
Biological Process (BP) regulation of T cell activation 0.7866 Highly Informative Inherited
Biological Process (BP) positive regulation of growth 0.4838 Highly Informative Inherited
Biological Process (BP) regulation of organ morphogenesis 0.1411 Highly Informative Inherited
Biological Process (BP) regulation of protein catabolic process 0.2258 Highly Informative Inherited
Biological Process (BP) leukocyte migration 0.9438 Highly Informative Inherited
Biological Process (BP) immune response-activating signal transduction 0.01161 Highly Informative Inherited
Biological Process (BP) cellular process involved in reproduction in multicellular organism 0.4196 Highly Informative Inherited
Biological Process (BP) establishment or maintenance of cell polarity 1 Highly Informative Inherited
Biological Process (BP) negative regulation of immune system process 0.003509 Highly Informative Inherited
Biological Process (BP) positive regulation of MAPK cascade 0.9686 Highly Informative Inherited
Biological Process (BP) intrinsic apoptotic signaling pathway 0.02587 Highly Informative Inherited
Biological Process (BP) muscle organ development 0.07238 Highly Informative Inherited
Biological Process (BP) MAPK cascade 0.9596 Highly Informative Inherited
Biological Process (BP) positive regulation of protein kinase activity 0.07317 Highly Informative Inherited
Biological Process (BP) cell junction organization 0.2768 Highly Informative Inherited
Biological Process (BP) icosanoid metabolic process 0.001603 Highly Informative Inherited
Biological Process (BP) unsaturated fatty acid metabolic process 0.004656 Highly Informative Inherited
Biological Process (BP) negative regulation of response to external stimulus 0.01245 Highly Informative Inherited
Biological Process (BP) regulation of adaptive immune response based on somatic recombination of immune receptors built from 0.2244 Highly Informative Inherited
Biological Process (BP) regulation of production of molecular mediator of immune response 0.1244 Highly Informative Inherited
Biological Process (BP) regulation of humoral immune response 0.4266 Highly Informative Inherited
Biological Process (BP) leukocyte mediated immunity 0.002028 Highly Informative Inherited
Biological Process (BP) response to fungus 0.7018 Highly Informative Inherited
Biological Process (BP) regulation of lymphocyte mediated immunity 0.02008 Highly Informative Inherited
Biological Process (BP) neural tube development 0.002258 Highly Informative Inherited
Molecular Function (MF) binding 0 Least Informative Direct
Molecular Function (MF) transferase activity 0.8327 Least Informative Inherited
Molecular Function (MF) hydrolase activity 0.003451 Least Informative Inherited
Molecular Function (MF) enzyme regulator activity 0.0008018 Moderately Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.003697 Moderately Informative Inherited
Molecular Function (MF) nucleic acid binding 1 Moderately Informative Inherited
Molecular Function (MF) peptidase activity 0 Informative Direct
Molecular Function (MF) enzyme activator activity 1.112e-11 Informative Direct
Molecular Function (MF) peptidase regulator activity 6.629e-06 Informative Direct
Molecular Function (MF) receptor activity 1.289e-05 Informative Direct
Molecular Function (MF) molecular transducer activity 1.422e-05 Informative Direct
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 0.0002281 Informative Direct
Molecular Function (MF) kinase activity 0.0002469 Informative Direct
Molecular Function (MF) enzyme binding 0.0006006 Informative Direct
Molecular Function (MF) carbohydrate derivative binding 0.3971 Informative Inherited
Molecular Function (MF) amide binding 0.008811 Informative Inherited
Molecular Function (MF) receptor binding 0.4348 Informative Inherited
Molecular Function (MF) DNA binding 0.5651 Informative Inherited
Molecular Function (MF) cytokine receptor binding 0 Highly Informative Direct
Molecular Function (MF) cysteine-type endopeptidase regulator activity involved in apoptotic process 5.832e-12 Highly Informative Direct
Molecular Function (MF) channel regulator activity 1.516e-10 Highly Informative Direct
Molecular Function (MF) endopeptidase activity 2.559e-10 Highly Informative Direct
Molecular Function (MF) protein domain specific binding 4.564e-10 Highly Informative Direct
Molecular Function (MF) protein kinase activity 4.902e-06 Highly Informative Direct
Molecular Function (MF) peptide binding 1.174e-05 Highly Informative Direct
Molecular Function (MF) growth factor receptor binding 2.575e-05 Highly Informative Direct
Molecular Function (MF) transcription factor binding 0.8919 Highly Informative Inherited
Molecular Function (MF) kinase binding 0.2236 Highly Informative Inherited
Molecular Function (MF) protein binding transcription factor activity 0.143 Highly Informative Inherited
Molecular Function (MF) structure-specific DNA binding 0.05455 Highly Informative Inherited
Cellular Component (CC) protein complex 0 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.0002752 Least Informative Direct
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.04091 Least Informative Inherited
Cellular Component (CC) cytosol 5.43e-12 Moderately Informative Direct
Cellular Component (CC) plasma membrane 1.148e-11 Moderately Informative Direct
Cellular Component (CC) cell projection 1.157e-07 Moderately Informative Direct
Cellular Component (CC) intrinsic to membrane 1 Moderately Informative Inherited
Cellular Component (CC) cytoskeleton 0.0376 Moderately Informative Inherited
Cellular Component (CC) neuron projection 1.637e-09 Informative Direct
Cellular Component (CC) cell-cell junction 4.58e-08 Informative Direct
Cellular Component (CC) synapse part 3.309e-07 Informative Direct
Cellular Component (CC) contractile fiber part 9.318e-07 Informative Direct
Cellular Component (CC) integral to membrane 0.8132 Informative Inherited
Cellular Component (CC) cell cortex 0.101 Informative Inherited
Cellular Component (CC) cell-cell contact zone 0 Highly Informative Direct
Cellular Component (CC) membrane raft 3.621e-13 Highly Informative Direct
Cellular Component (CC) perinuclear region of cytoplasm 2.106e-07 Highly Informative Direct
Cellular Component (CC) cortical cytoskeleton 0.0003978 Highly Informative Direct
Cellular Component (CC) main axon 0.00266 Highly Informative Inherited
Cellular Component (CC) receptor complex 0.0705 Highly Informative Inherited
Cellular Component (CC) sarcomere 0.06309 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Least InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Cysteine endopeptidases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)immune system disease0.05332Least InformativeInherited
Disease Ontology (DO)bone disease0.0002317Moderately InformativeDirect
Disease Ontology (DO)syndrome0.04037Moderately InformativeInherited
Disease Ontology (DO)hypersensitivity reaction type II disease0.9818Moderately InformativeInherited
Disease Ontology (DO)inflammatory bowel disease1.239e-06InformativeDirect
Disease Ontology (DO)arthropathy0.01535InformativeInherited
Disease Ontology (DO)hypersensitivity reaction type IV disease0.03237InformativeInherited
Disease Ontology (DO)viral infectious disease1InformativeInherited
Disease Ontology (DO)irritable bowel syndrome1.075e-05Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the abdomen0.2385Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0.3784Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0.7868Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of skeletal morphology0.787Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of blood and blood-forming tissues0.002368Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the immune system0.005331Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the vasculature0.145Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of cardiac morphology0.6228Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal joint morphology0.6657Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of temperature regulation4.018e-07InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the spleen0.0004651InformativeDirect
Phenotypic Abnormality (PA)Visceromegaly0.002492InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the lymph nodes0.004734InformativeInherited
Phenotypic Abnormality (PA)Abnormality of leukocytes0.0683InformativeInherited
Phenotypic Abnormality (PA)Vasculitis2.439e-08Highly InformativeDirect
Phenotypic Abnormality (PA)Lymphadenopathy7.441e-07Highly InformativeDirect
Phenotypic Abnormality (PA)Leukocytosis1.512e-05Highly InformativeDirect
Phenotypic Abnormality (PA)Episodic fever2.457e-05Highly InformativeDirect
Phenotypic Abnormality (PA)Elevated erythrocyte sedimentation rate2.661e-05Highly InformativeDirect
Phenotypic Abnormality (PA)Increased IgM level9.899e-05Highly InformativeDirect
Phenotypic Abnormality (PA)Amyloidosis0.0001146Highly InformativeDirect
Phenotypic Abnormality (PA)Meningitis0.0001937Highly InformativeDirect
Phenotypic Abnormality (PA)Arthralgia0.0005161Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the pericardium0.0005526Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of T cell physiology0.0005526Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the peritoneum0.0008667Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)hematopoietic system phenotype2.259e-07Least InformativeDirect
Mammalian Phenotype (MP)immune system phenotype6.841e-07Least InformativeDirect
Mammalian Phenotype (MP)cellular phenotype5.021e-05Least InformativeDirect
Mammalian Phenotype (MP)mortality/aging0.2317Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.544Least InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell physiology1.638e-11Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal immune serum protein physiology8.737e-07Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal protein level4.604e-06Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal immune cell physiology0.0006134Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal cell-mediated immunity0.0007421Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal adaptive immunity0.001078Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell death0.002523Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune system organ morphology0.01213Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal professional antigen presenting cell morphology0.02993Moderately InformativeInherited
Mammalian Phenotype (MP)digestive/alimentary phenotype0.08254Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal leukopoiesis0.1326Moderately InformativeInherited
Mammalian Phenotype (MP)respiratory system phenotype0.1346Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal lymphocyte morphology0.1521Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal inflammatory response0.5801Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal macrophage physiology0.0002782InformativeDirect
Mammalian Phenotype (MP)autoimmune response0.0003324InformativeDirect
Mammalian Phenotype (MP)abnormal circulating cytokine level0.0006915InformativeDirect
Mammalian Phenotype (MP)abnormal lymph node morphology0.01198InformativeInherited
Mammalian Phenotype (MP)abnormal spleen morphology0.01322InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin secretion0.02573InformativeInherited
Mammalian Phenotype (MP)abnormal enzyme/ coenzyme level0.08127InformativeInherited
Mammalian Phenotype (MP)abnormal T cell physiology0.1229InformativeInherited
Mammalian Phenotype (MP)abnormal digestive system physiology0.1702InformativeInherited
Mammalian Phenotype (MP)abnormal mature B cell morphology0.2061InformativeInherited
Mammalian Phenotype (MP)abnormal interferon secretion0.2153InformativeInherited
Mammalian Phenotype (MP)abnormal interferon level0.2927InformativeInherited
Mammalian Phenotype (MP)abnormal respiration0.3639InformativeInherited
Mammalian Phenotype (MP)abnormal T cell morphology0.6037InformativeInherited
Mammalian Phenotype (MP)abnormal Peyer's patch morphology0.8436InformativeInherited
Mammalian Phenotype (MP)abnormal lymph organ size0.8943InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin-1 beta secretion8.319e-11Highly InformativeDirect
Mammalian Phenotype (MP)abnormal Peyer's patch size3.4e-07Highly InformativeDirect
Mammalian Phenotype (MP)enlarged lymph nodes1.469e-06Highly InformativeDirect
Mammalian Phenotype (MP)decreased interferon-alpha secretion2.455e-06Highly InformativeDirect
Mammalian Phenotype (MP)abnormal spleen germinal center morphology2.902e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal gut flora balance6.586e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal B-1 B cell number8.175e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal acute inflammation0.0001278Highly InformativeDirect
Mammalian Phenotype (MP)abnormal airway responsiveness0.0001408Highly InformativeDirect
Mammalian Phenotype (MP)decreased apoptosis0.0001537Highly InformativeDirect
Mammalian Phenotype (MP)decreased inflammatory response0.0002484Highly InformativeDirect
Mammalian Phenotype (MP)abnormal T cell proliferation0.000443Highly InformativeDirect
Mammalian Phenotype (MP)abnormal interleukin-6 secretion0.06766Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.0001952Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.003962Least InformativeInherited
Worm Phenotype (WP)cell death variant0.05475Moderately InformativeInherited
Worm Phenotype (WP)cell corpse number variant4.879e-05InformativeDirect
Worm Phenotype (WP)transgene expression reduced0.0001888InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system0Least InformativeDirect

Document: FA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases2.305e-07Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups1.366e-05Least InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Moderately InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase0InformativeDirect
Enzyme Commission (EC)Cysteine endopeptidases0InformativeDirect
Enzyme Commission (EC)Protein-tyrosine kinases0.0004448InformativeDirect
Enzyme Commission (EC)Non-specific protein-tyrosine kinase3.867e-07Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processApoptosis0Moderately InformativeDirect
Biological processDifferentiation8.945e-06Moderately InformativeDirect
Biological processInflammatory response0InformativeDirect
Biological processInnate immunity1.673e-12InformativeDirect
Biological processmRNA splicing0.0001405InformativeDirect
Cellular componentNucleus1.383e-11Least InformativeDirect
Cellular componentCytoplasm2.382e-07Least InformativeDirect
Cellular componentMembrane0.0005405Least InformativeDirect
Cellular componentCytoskeleton6.009e-05Moderately InformativeDirect
Cellular componentCell junction0.007189Moderately InformativeInherited
Cellular componentSynapse0.06202InformativeInherited
Cellular componentPostsynaptic cell membrane1.828e-05Highly InformativeDirect
Coding sequence diversityPolymorphism0.0005873Moderately InformativeDirect
DiseaseDisease mutation0.0009948Least InformativeDirect
DiseaseAmyloidosis6.638e-08Highly InformativeDirect
DomainRepeat0Least InformativeDirect
DomainTransmembrane0.9815Least InformativeInherited
DomainANK repeat0InformativeDirect
DomainLeucine-rich repeat0InformativeDirect
DomainImmunoglobulin domain1.61e-08InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationTransferase1Least InformativeInherited
Post-translational modificationDevelopmental protein0Moderately InformativeDirect
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationProtease5.2e-12Moderately InformativeDirect
Post-translational modificationActivator0.0006635Moderately InformativeDirect
Post-translational modificationKinase0.1301Moderately InformativeInherited
Post-translational modificationThiol protease0InformativeDirect
Post-translational modificationSerine/threonine-protein kinase1.353e-09InformativeDirect
Post-translational modificationPhosphoprotein8.324e-13Least InformativeDirect
Post-translational modificationUbl conjugation2.04e-08Moderately InformativeDirect
Post-translational modificationZymogen7.93e-12InformativeDirect
Post-translational modificationHydroxylation0.0001707InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR011029 SSF47986 Protein matches
Abstract

The death domain (DD) is a conserved region of about 80 residues found on death receptors, and which is required for death signalling, as well as a variety of non-apoptotic functions [PubMed11828422, PubMed12655292]. Proteins containing this domain include the low affinity neurotrophin receptor p73, Fas, FADD (Fas-associated death domain protein), TNF-1 (tumour necrosis factor receptor-1), Pelle protein kinase, and the Tube adaptor protein [PubMed15226512].

The induction of apoptosis also relies on the presence of a second domain, called the death effector domain. The death effector domain (DED) occurs in proteins that regulate programmed cell death, including both pro- and anti-apoptotic proteins; many of these proteins are also involved in controlling cellular activation and proliferation pathways [PubMed12719729]. Proteins containing this domain include FADD (DED N-terminal, DD C-terminal), PEA-15 (phosphoproteins enriched in astrocytes 15kDa), caspases and FLIP.

The induction of apoptosis results in the activation of caspases, a family of aspartyl-specific cysteine proteases that are the main executioners of apoptosis. For example, the DED of FADD recruits two DED-containing caspases, caspase-8 and caspase-10, to form the death-inducing signal complex, which initiates apoptosis. Proteins containing the caspase recruitment domain (CARD) are involved in the recruitment and activation of caspases during apoptosis [PubMed12101092]. Other CARD proteins participate in NF-kappaB signalling pathways associated with innate or adaptive immune responses. Proteins containing CARD include Raidd, APAF-1 (apoptotic protease activating factor 1), procaspase 9 and iceberg (inhibitor of interleukin-1-beta generation).

The DD shows strong structural similarity to both DED and CARD. They all display a 6-helical closed bundle fold, with greek key topology and an internal psuedo two-fold symmetry. However, despite their overall similarity in topology, each domain forms specialised interactions, typically only with members of its own subfamily, for example DED with DED.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 18 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a DEATH domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 18 hidden Markov models representing the DEATH domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]