SUPERFAMILY 1.75 HMM library and genome assignments server


Ribosomal protein S7 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Ribosomal protein S7 [ 47972]
Superfamily:   Ribosomal protein S7 [ 47973]
Families:   Ribosomal protein S7 [ 47974]


Superfamily statistics
Genomes (3,231) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,208 21,354 15
Proteins 4,202 21,344 15


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process6.704e-062.513e-11Least InformativeDirect
Biological Process (BP)protein metabolic process6.276e-074.274e-11Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process8.99e-062.911e-08Least InformativeDirect
Biological Process (BP)gene expression6.969e-110Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process2.797e-110Moderately InformativeDirect
Molecular Function (MF)binding0.036340.02827Least InformativeInherited
Molecular Function (MF)nucleic acid binding1.961e-072.156e-08Moderately InformativeDirect
Molecular Function (MF)structural molecule activity7.654e-130Moderately InformativeDirect
Molecular Function (MF)RNA binding3.236e-097.57e-14InformativeDirect
Molecular Function (MF)structural constituent of ribosome1.014e-140InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle3.192e-061.383e-09Least InformativeDirect
Cellular Component (CC)cytoplasmic part2.266e-112.148e-07Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0050923.865e-05Least InformativeInherited
Cellular Component (CC)cytosol8.492e-052.52e-06Moderately InformativeDirect
Cellular Component (CC)ribonucleoprotein complex4.352e-120Moderately InformativeDirect
Cellular Component (CC)small ribosomal subunit00InformativeDirect
Cellular Component (CC)cytosolic ribosome01.058e-05InformativeDirect
Cellular Component (CC)cytosolic small ribosomal subunit5.73e-073.966e-11Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 2.513e-11 Least Informative Direct
Biological Process (BP) protein metabolic process 4.274e-11 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 2.911e-08 Least Informative Direct
Biological Process (BP) gene expression 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Molecular Function (MF) binding 0.02827 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 2.156e-08 Moderately Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Molecular Function (MF) RNA binding 7.57e-14 Informative Direct
Molecular Function (MF) structural constituent of ribosome 0 Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 1.383e-09 Least Informative Direct
Cellular Component (CC) cytoplasmic part 2.148e-07 Least Informative Direct
Cellular Component (CC) intracellular organelle part 3.865e-05 Least Informative Direct
Cellular Component (CC) cytosol 2.52e-06 Moderately Informative Direct
Cellular Component (CC) ribonucleoprotein complex 0 Moderately Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 1.058e-05 Informative Direct
Cellular Component (CC) cytosolic small ribosomal subunit 3.966e-11 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Molecular functionRNA-binding0Moderately InformativeDirect
Molecular functionrRNA-binding0InformativeDirect
Molecular functiontRNA-binding0InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000235 SSF47973 Protein matches
Abstract

Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [PubMed8338632, PubMed8524651]. The structure for S7 is known [PubMed9331418].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S7 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Ribosomal protein S7 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]