SUPERFAMILY 1.75 HMM library and genome assignments server

Ribosomal protein S7 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Ribosomal protein S7 [ 47972]
Superfamily:   Ribosomal protein S7 [ 47973]
Families:   Ribosomal protein S7 [ 47974]


Superfamily statistics
Genomes (3,232) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,211 21,354 15
Proteins 4,205 21,344 15


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.0000067040.00000000002513Least InformativeDirect
Biological Process (BP)protein metabolic process0.00000062760.00000000004274Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process0.000008990.00000002911Least InformativeDirect
Biological Process (BP)gene expression0.000000000069690Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.000000000027970Moderately InformativeDirect
Molecular Function (MF)binding0.036340.02827Least InformativeInherited
Molecular Function (MF)nucleic acid binding0.00000019610.00000002156Moderately InformativeDirect
Molecular Function (MF)structural molecule activity0.00000000000076540Moderately InformativeDirect
Molecular Function (MF)RNA binding0.0000000032360.0000000000000757InformativeDirect
Molecular Function (MF)structural constituent of ribosome0.000000000000010140InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle0.0000031920.000000001383Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.000000000022660.0000002148Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0050920.00003865Least InformativeInherited
Cellular Component (CC)cytosol0.000084920.00000252Moderately InformativeDirect
Cellular Component (CC)ribonucleoprotein complex0.0000000000043520Moderately InformativeDirect
Cellular Component (CC)small ribosomal subunit00InformativeDirect
Cellular Component (CC)cytosolic ribosome00.00001058InformativeDirect
Cellular Component (CC)cytosolic small ribosomal subunit0.0000005730.00000000003966Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.00000000002513 Least Informative Direct
Biological Process (BP) protein metabolic process 0.00000000004274 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.00000002911 Least Informative Direct
Biological Process (BP) gene expression 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Molecular Function (MF) binding 0.02827 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 0.00000002156 Moderately Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Molecular Function (MF) RNA binding 0.0000000000000757 Informative Direct
Molecular Function (MF) structural constituent of ribosome 0 Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.000000001383 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.0000002148 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.00003865 Least Informative Direct
Cellular Component (CC) cytosol 0.00000252 Moderately Informative Direct
Cellular Component (CC) ribonucleoprotein complex 0 Moderately Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.00001058 Informative Direct
Cellular Component (CC) cytosolic small ribosomal subunit 0.00000000003966 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Molecular functionRNA-binding0Moderately InformativeDirect
Molecular functionrRNA-binding0InformativeDirect
Molecular functiontRNA-binding0InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000235 SSF47973 Protein matches
Abstract

Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [PubMed8338632, PubMed8524651]. The structure for S7 is known [PubMed9331418].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S7 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Ribosomal protein S7 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]