SUPERFAMILY 1.75 HMM library and genome assignments server


4-helical cytokines superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   4-helical cytokines [ 47265]
Superfamily:   4-helical cytokines [ 47266] (3)
Families:   Long-chain cytokines [ 47267] (9)
  Short-chain cytokines [ 47286] (13)
  Interferons/interleukin-10 (IL-10) [ 47305] (8)


Superfamily statistics
Genomes (61) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 2,596 6,002 79
Proteins 2,576 5,990 77


Functional annotation
General category Processes_EC
Detailed category Immune response

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)multicellular organismal process01.186e-13Least InformativeDirect
Biological Process (BP)developmental process7.463e-124.503e-07Least InformativeDirect
Biological Process (BP)response to stimulus00Least InformativeDirect
Biological Process (BP)regulation of cellular process0.0019040.012Least InformativeInherited
Biological Process (BP)regulation of metabolic process8.897e-090.005838Least InformativeInherited
Biological Process (BP)cellular macromolecule metabolic process0.027671Least InformativeInherited
Biological Process (BP)biosynthetic process0.050840.8314Least InformativeInherited
Biological Process (BP)single-organism cellular process3.861e-070.001136Least InformativeInherited
Biological Process (BP)protein metabolic process11Least InformativeInherited
Biological Process (BP)localization11Least InformativeInherited
Biological Process (BP)single-organism metabolic process11Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process11Least InformativeInherited
Biological Process (BP)immune system process00Moderately InformativeDirect
Biological Process (BP)response to endogenous stimulus0.00032193.3e-05Moderately InformativeDirect
Biological Process (BP)positive regulation of metabolic process00Moderately InformativeDirect
Biological Process (BP)response to organic substance3.639e-130Moderately InformativeDirect
Biological Process (BP)regulation of cell communication6.45e-114.008e-15Moderately InformativeDirect
Biological Process (BP)regulation of signaling1.433e-120Moderately InformativeDirect
Biological Process (BP)cell differentiation01.155e-08Moderately InformativeDirect
Biological Process (BP)regulation of cellular metabolic process3.099e-152.788e-05Moderately InformativeDirect
Biological Process (BP)regulation of localization9.457e-090Moderately InformativeDirect
Biological Process (BP)single-organism developmental process4.14e-072.266e-07Moderately InformativeDirect
Biological Process (BP)organ development7.819e-071.429e-07Moderately InformativeDirect
Biological Process (BP)positive regulation of cellular process00Moderately InformativeDirect
Biological Process (BP)negative regulation of cellular process1.403e-073.864e-05Moderately InformativeDirect
Biological Process (BP)regulation of response to stimulus00Moderately InformativeDirect
Biological Process (BP)regulation of developmental process2.195e-144.008e-15Moderately InformativeDirect
Biological Process (BP)regulation of multicellular organismal process00Moderately InformativeDirect
Biological Process (BP)regulation of protein metabolic process1.598e-150Moderately InformativeDirect
Biological Process (BP)multi-organism process00Moderately InformativeDirect
Biological Process (BP)response to oxygen-containing compound10.539Moderately InformativeInherited
Biological Process (BP)response to abiotic stimulus11Moderately InformativeInherited
Biological Process (BP)tissue development0.8671Moderately InformativeInherited
Biological Process (BP)regulation of nitrogen compound metabolic process0.00038931Moderately InformativeInherited
Biological Process (BP)regulation of molecular function0.17420.004603Moderately InformativeInherited
Biological Process (BP)regulation of gene expression0.20161Moderately InformativeInherited
Biological Process (BP)homeostatic process10.9348Moderately InformativeInherited
Biological Process (BP)nervous system development0.99491Moderately InformativeInherited
Biological Process (BP)regulation of biosynthetic process2.828e-080.3383Moderately InformativeInherited
Biological Process (BP)cellular response to stress11Moderately InformativeInherited
Biological Process (BP)negative regulation of metabolic process0.049280.5133Moderately InformativeInherited
Biological Process (BP)cellular localization10.915Moderately InformativeInherited
Biological Process (BP)cellular response to chemical stimulus0.0092030.002157Moderately InformativeInherited
Biological Process (BP)signal transduction0.7150.2892Moderately InformativeInherited
Biological Process (BP)cellular protein modification process11Moderately InformativeInherited
Biological Process (BP)phosphate-containing compound metabolic process11Moderately InformativeInherited
Biological Process (BP)organic substance transport0.67150.1573Moderately InformativeInherited
Biological Process (BP)organic hydroxy compound metabolic process0.040240.2549Moderately InformativeInherited
Biological Process (BP)reproduction0.21930.2069Moderately InformativeInherited
Biological Process (BP)cell activation00InformativeDirect
Biological Process (BP)regulation of cytokine production00InformativeDirect
Biological Process (BP)positive regulation of immune system process0.00087092.287e-09InformativeDirect
Biological Process (BP)regulation of immune effector process05.43e-14InformativeDirect
Biological Process (BP)defense response00InformativeDirect
Biological Process (BP)immune response3.034e-081.114e-08InformativeDirect
Biological Process (BP)response to wounding6.09e-156.117e-14InformativeDirect
Biological Process (BP)positive regulation of signal transduction0.00038563.079e-10InformativeDirect
Biological Process (BP)positive regulation of macromolecule biosynthetic process2.212e-133.273e-07InformativeDirect
Biological Process (BP)positive regulation of phosphorus metabolic process6.121e-070InformativeDirect
Biological Process (BP)regulation of intracellular protein kinase cascade1.784e-072.268e-10InformativeDirect
Biological Process (BP)positive regulation of gene expression5.652e-111.061e-06InformativeDirect
Biological Process (BP)positive regulation of cellular biosynthetic process2.202e-101.328e-05InformativeDirect
Biological Process (BP)regulation of cellular catabolic process0.00076099.362e-05InformativeDirect
Biological Process (BP)regulation of protein localization2.419e-123.021e-08InformativeDirect
Biological Process (BP)response to lipid1.673e-062.275e-07InformativeDirect
Biological Process (BP)response to cytokine stimulus7.057e-091.471e-09InformativeDirect
Biological Process (BP)regulation of cell proliferation00InformativeDirect
Biological Process (BP)multi-organism reproductive process0.00027089.621e-08InformativeDirect
Biological Process (BP)hematopoietic or lymphoid organ development00InformativeDirect
Biological Process (BP)regulation of immune response1.698e-094.21e-14InformativeDirect
Biological Process (BP)regulation of body fluid levels1.681e-079.877e-07InformativeDirect
Biological Process (BP)regulation of secretion00InformativeDirect
Biological Process (BP)positive regulation of transport8.186e-111.387e-10InformativeDirect
Biological Process (BP)positive regulation of developmental process6.068e-061.186e-11InformativeDirect
Biological Process (BP)positive regulation of nitrogen compound metabolic process5.664e-124.818e-07InformativeDirect
Biological Process (BP)positive regulation of multicellular organismal process1.206e-053.983e-08InformativeDirect
Biological Process (BP)positive regulation of protein metabolic process8.091e-078.676e-14InformativeDirect
Biological Process (BP)response to other organism3.126e-102.457e-08InformativeDirect
Biological Process (BP)regulation of apoptotic process0.015610.004221InformativeInherited
Biological Process (BP)regulation of cell development0.0031744.125e-06InformativeInherited
Biological Process (BP)apoptotic process0.72130.8945InformativeInherited
Biological Process (BP)cellular response to oxygen-containing compound0.50970.1639InformativeInherited
Biological Process (BP)cell proliferation0.002843.037e-09InformativeInherited
Biological Process (BP)multicellular organismal reproductive process0.076450.5587InformativeInherited
Biological Process (BP)response to hormone stimulus0.037040.00201InformativeInherited
Biological Process (BP)response to organic cyclic compound0.00038060.003593InformativeInherited
Biological Process (BP)regulation of lipid metabolic process0.86750.4989InformativeInherited
Biological Process (BP)generation of neurons3.153e-060.007593InformativeInherited
Biological Process (BP)regulation of reproductive process0.38980.3719InformativeInherited
Biological Process (BP)regulation of cell cycle process0.4260.5523InformativeInherited
Biological Process (BP)regulation of growth0.072960.001155InformativeInherited
Biological Process (BP)negative regulation of protein metabolic process0.10080.001937InformativeInherited
Biological Process (BP)negative regulation of biosynthetic process11InformativeInherited
Biological Process (BP)negative regulation of cell death0.049360.00014InformativeInherited
Biological Process (BP)negative regulation of response to stimulus0.018230.5714InformativeInherited
Biological Process (BP)regulation of response to external stimulus0.13250.02968InformativeInherited
Biological Process (BP)response to external stimulus0.12120.9217InformativeInherited
Biological Process (BP)regulation of nervous system development0.99281InformativeInherited
Biological Process (BP)regulation of system process11InformativeInherited
Biological Process (BP)regulation of response to stress0.068280.4515InformativeInherited
Biological Process (BP)negative regulation of cellular metabolic process0.043310.3226InformativeInherited
Biological Process (BP)cellular component movement0.020050.1381InformativeInherited
Biological Process (BP)locomotion0.00073040.2863InformativeInherited
Biological Process (BP)localization of cell2.428e-050.006298InformativeInherited
Biological Process (BP)peptidyl-amino acid modification0.060610.1029InformativeInherited
Biological Process (BP)protein phosphorylation0.17360.5927InformativeInherited
Biological Process (BP)regulation of hormone levels10.6324InformativeInherited
Biological Process (BP)single-organism behavior0.46960.5676InformativeInherited
Biological Process (BP)alcohol metabolic process0.003940.04481InformativeInherited
Biological Process (BP)steroid metabolic process0.002180.025InformativeInherited
Biological Process (BP)single organism reproductive process0.084410.1795InformativeInherited
Biological Process (BP)intracellular signal transduction10.2478InformativeInherited
Biological Process (BP)nitrogen compound transport0.50020.3679InformativeInherited
Biological Process (BP)secretion0.090140.1148InformativeInherited
Biological Process (BP)immune effector process0.22380.07209InformativeInherited
Biological Process (BP)regulation of protein phosphorylation0.0094154.768e-05InformativeInherited
Biological Process (BP)chordate embryonic development0.00016710.1961InformativeInherited
Biological Process (BP)embryonic organ development0.0035430.0412InformativeInherited
Biological Process (BP)embryonic placenta development2.243e-069.755e-05Highly InformativeDirect
Biological Process (BP)negative regulation of immune system process00Highly InformativeDirect
Biological Process (BP)positive regulation of immune effector process3.152e-083.349e-07Highly InformativeDirect
Biological Process (BP)regulation of lymphocyte mediated immunity00Highly InformativeDirect
Biological Process (BP)inflammatory response1.437e-068.033e-07Highly InformativeDirect
Biological Process (BP)hemostasis00.0008344Highly InformativeDirect
Biological Process (BP)feeding behavior01.28e-08Highly InformativeDirect
Biological Process (BP)negative regulation of cell proliferation1.929e-111.738e-09Highly InformativeDirect
Biological Process (BP)response to virus1.809e-060.000197Highly InformativeDirect
Biological Process (BP)hormone transport0.00035348.279e-05Highly InformativeDirect
Biological Process (BP)peptidyl-tyrosine phosphorylation1.527e-051.911e-05Highly InformativeDirect
Biological Process (BP)cytokine-mediated signaling pathway1.598e-154.008e-15Highly InformativeDirect
Biological Process (BP)negative regulation of cellular catabolic process00Highly InformativeDirect
Biological Process (BP)regulation of cell killing0.00013850.0001161Highly InformativeDirect
Biological Process (BP)response to corticosteroid stimulus8.757e-063.993e-08Highly InformativeDirect
Biological Process (BP)negative regulation of response to external stimulus2.629e-083.806e-10Highly InformativeDirect
Biological Process (BP)response to lipopolysaccharide0.00026994.255e-05Highly InformativeDirect
Biological Process (BP)regulation of cytokine biosynthetic process6.559e-085.326e-10Highly InformativeDirect
Biological Process (BP)regulation of protein catabolic process3.252e-084.52e-07Highly InformativeDirect
Biological Process (BP)amide transport0.00074280.0005527Highly InformativeDirect
Biological Process (BP)regulation of multi-organism process1.919e-066.798e-05Highly InformativeDirect
Biological Process (BP)regulation of nitric oxide biosynthetic process3.912e-055.45e-10Highly InformativeDirect
Biological Process (BP)positive regulation of cell differentiation1.057e-080Highly InformativeDirect
Biological Process (BP)regulation of myeloid cell differentiation2.978e-061.186e-13Highly InformativeDirect
Biological Process (BP)regulation of protein secretion00Highly InformativeDirect
Biological Process (BP)regulation of peptidyl-tyrosine phosphorylation00Highly InformativeDirect
Biological Process (BP)regulation of steroid biosynthetic process1.166e-054.449e-06Highly InformativeDirect
Biological Process (BP)coagulation4.289e-093.316e-08Highly InformativeDirect
Biological Process (BP)positive regulation of cell activation00Highly InformativeDirect
Biological Process (BP)positive regulation of secretion1.36e-138.706e-12Highly InformativeDirect
Biological Process (BP)negative regulation of secretion2.974e-072.417e-08Highly InformativeDirect
Biological Process (BP)regulation of DNA metabolic process5.757e-112.644e-11Highly InformativeDirect
Biological Process (BP)positive regulation of sequence-specific DNA binding transcription factor activity01.909e-11Highly InformativeDirect
Biological Process (BP)positive regulation of protein transport1.598e-150Highly InformativeDirect
Biological Process (BP)negative regulation of protein transport0.00039590.0003433Highly InformativeDirect
Biological Process (BP)negative regulation of multicellular organismal process02.442e-14Highly InformativeDirect
Biological Process (BP)leukocyte proliferation5.34e-051.664e-06Highly InformativeDirect
Biological Process (BP)positive regulation of leukocyte proliferation6.969e-062.743e-10Highly InformativeDirect
Biological Process (BP)regulation of leukocyte differentiation7.021e-110Highly InformativeDirect
Biological Process (BP)regulation of lymphocyte activation0.34090.1084Highly InformativeInherited
Biological Process (BP)positive regulation of apoptotic process0.00093860.02573Highly InformativeInherited
Biological Process (BP)cellular response to biotic stimulus0.00090960.01491Highly InformativeInherited
Biological Process (BP)connective tissue development0.045471.223e-05Highly InformativeInherited
Biological Process (BP)regulation of innate immune response0.48161Highly InformativeInherited
Biological Process (BP)regulation of proteolysis0.042230.0001732Highly InformativeInherited
Biological Process (BP)regulation of interleukin-1 production10.875Highly InformativeInherited
Biological Process (BP)regulation of mononuclear cell proliferation0.97261Highly InformativeInherited
Biological Process (BP)regulation of Ras protein signal transduction0.0032123.544e-07Highly InformativeInherited
Biological Process (BP)negative regulation of reproductive process0.083220.01186Highly InformativeInherited
Biological Process (BP)regulation of adaptive immune response based on somatic recombination of immune receptors built from10Highly InformativeInherited
Biological Process (BP)response to topologically incorrect protein0.10490.3934Highly InformativeInherited
Biological Process (BP)innate immune response11Highly InformativeInherited
Biological Process (BP)negative regulation of apoptotic process0.92620.8257Highly InformativeInherited
Biological Process (BP)positive regulation of cytokine production0.026150.0001998Highly InformativeInherited
Biological Process (BP)regulation of response to nutrient levels11Highly InformativeInherited
Biological Process (BP)regulation of ion homeostasis11Highly InformativeInherited
Biological Process (BP)regulation of neurological system process0.44730.2943Highly InformativeInherited
Biological Process (BP)ER-nucleus signaling pathway0.0017730.0505Highly InformativeInherited
Biological Process (BP)response to endoplasmic reticulum stress9.138e-050.006367Highly InformativeInherited
Biological Process (BP)chemotaxis0.36151Highly InformativeInherited
Biological Process (BP)leukocyte migration0.15260.1627Highly InformativeInherited
Biological Process (BP)signal release0.042670.02353Highly InformativeInherited
Biological Process (BP)regulation of cellular carbohydrate metabolic process0.18140.03425Highly InformativeInherited
Biological Process (BP)adult behavior0.00054550.0136Highly InformativeInherited
Biological Process (BP)sterol metabolic process0.00032020.001815Highly InformativeInherited
Biological Process (BP)wound healing0.53951Highly InformativeInherited
Biological Process (BP)multi-multicellular organism process0.11179.999e-05Highly InformativeInherited
Biological Process (BP)T cell activation0.71690.9776Highly InformativeInherited
Biological Process (BP)lymphocyte differentiation0.32350.2426Highly InformativeInherited
Biological Process (BP)leukocyte activation involved in immune response0.09530.05898Highly InformativeInherited
Biological Process (BP)leukocyte homeostasis0.011490.001829Highly InformativeInherited
Molecular Function (MF)binding00Least InformativeDirect
Molecular Function (MF)protein binding00Moderately InformativeDirect
Molecular Function (MF)receptor binding00InformativeDirect
Cellular Component (CC)membrane11Least InformativeInherited
Cellular Component (CC)extracellular region00Moderately InformativeDirect
Cellular Component (CC)plasma membrane0.3730.9764Moderately InformativeInherited
Cellular Component (CC)extracellular space00InformativeDirect
Cellular Component (CC)cell surface1.069e-109.48e-06InformativeDirect
Cellular Component (CC)external side of plasma membrane4.531e-113.206e-09Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) multicellular organismal process 1.186e-13 Least Informative Direct
Biological Process (BP) developmental process 4.503e-07 Least Informative Direct
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) regulation of cellular process 0.012 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.8314 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 0.005838 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.001136 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) immune system process 0 Moderately Informative Direct
Biological Process (BP) response to endogenous stimulus 3.3e-05 Moderately Informative Direct
Biological Process (BP) positive regulation of metabolic process 0 Moderately Informative Direct
Biological Process (BP) response to organic substance 0 Moderately Informative Direct
Biological Process (BP) regulation of cell communication 4.008e-15 Moderately Informative Direct
Biological Process (BP) regulation of signaling 0 Moderately Informative Direct
Biological Process (BP) cell differentiation 1.155e-08 Moderately Informative Direct
Biological Process (BP) regulation of cellular metabolic process 2.788e-05 Moderately Informative Direct
Biological Process (BP) regulation of localization 0 Moderately Informative Direct
Biological Process (BP) single-organism developmental process 2.266e-07 Moderately Informative Direct
Biological Process (BP) organ development 1.429e-07 Moderately Informative Direct
Biological Process (BP) positive regulation of cellular process 0 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 3.864e-05 Moderately Informative Direct
Biological Process (BP) regulation of response to stimulus 0 Moderately Informative Direct
Biological Process (BP) regulation of developmental process 4.008e-15 Moderately Informative Direct
Biological Process (BP) regulation of multicellular organismal process 0 Moderately Informative Direct
Biological Process (BP) regulation of protein metabolic process 0 Moderately Informative Direct
Biological Process (BP) multi-organism process 0 Moderately Informative Direct
Biological Process (BP) response to oxygen-containing compound 0.539 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) tissue development 1 Moderately Informative Inherited
Biological Process (BP) regulation of nitrogen compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cellular localization 0.915 Moderately Informative Inherited
Biological Process (BP) regulation of molecular function 0.004603 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 1 Moderately Informative Inherited
Biological Process (BP) homeostatic process 0.9348 Moderately Informative Inherited
Biological Process (BP) nervous system development 1 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 0.3383 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.2892 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 1 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 1 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.7797 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.5133 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 0.002157 Moderately Informative Inherited
Biological Process (BP) organic substance transport 0.1573 Moderately Informative Inherited
Biological Process (BP) organic hydroxy compound metabolic process 0.2549 Moderately Informative Inherited
Biological Process (BP) reproduction 0.2069 Moderately Informative Inherited
Biological Process (BP) cell activation 0 Informative Direct
Biological Process (BP) regulation of cytokine production 0 Informative Direct
Biological Process (BP) regulation of protein phosphorylation 4.768e-05 Informative Direct
Biological Process (BP) positive regulation of immune system process 2.287e-09 Informative Direct
Biological Process (BP) regulation of immune effector process 5.43e-14 Informative Direct
Biological Process (BP) nucleocytoplasmic transport 0.0001275 Informative Direct
Biological Process (BP) defense response 0 Informative Direct
Biological Process (BP) immune response 1.114e-08 Informative Direct
Biological Process (BP) cell proliferation 3.037e-09 Informative Direct
Biological Process (BP) response to wounding 6.117e-14 Informative Direct
Biological Process (BP) positive regulation of signal transduction 3.079e-10 Informative Direct
Biological Process (BP) positive regulation of macromolecule biosynthetic process 3.273e-07 Informative Direct
Biological Process (BP) positive regulation of phosphorus metabolic process 0 Informative Direct
Biological Process (BP) regulation of intracellular protein kinase cascade 2.268e-10 Informative Direct
Biological Process (BP) positive regulation of gene expression 1.061e-06 Informative Direct
Biological Process (BP) positive regulation of cellular biosynthetic process 1.328e-05 Informative Direct
Biological Process (BP) regulation of cellular catabolic process 9.362e-05 Informative Direct
Biological Process (BP) regulation of protein localization 3.021e-08 Informative Direct
Biological Process (BP) response to lipid 2.275e-07 Informative Direct
Biological Process (BP) response to cytokine stimulus 1.471e-09 Informative Direct
Biological Process (BP) regulation of cell proliferation 0 Informative Direct
Biological Process (BP) multi-organism reproductive process 9.621e-08 Informative Direct
Biological Process (BP) hematopoietic or lymphoid organ development 0 Informative Direct
Biological Process (BP) gland development 5.367e-05 Informative Direct
Biological Process (BP) regulation of immune response 4.21e-14 Informative Direct
Biological Process (BP) regulation of body fluid levels 9.877e-07 Informative Direct
Biological Process (BP) regulation of secretion 0 Informative Direct
Biological Process (BP) positive regulation of transport 1.387e-10 Informative Direct
Biological Process (BP) positive regulation of developmental process 1.186e-11 Informative Direct
Biological Process (BP) positive regulation of nitrogen compound metabolic process 4.818e-07 Informative Direct
Biological Process (BP) positive regulation of multicellular organismal process 3.983e-08 Informative Direct
Biological Process (BP) positive regulation of protein metabolic process 8.676e-14 Informative Direct
Biological Process (BP) response to other organism 2.457e-08 Informative Direct
Biological Process (BP) regulation of cell development 4.125e-06 Informative Direct
Biological Process (BP) negative regulation of cell death 0.00014 Informative Direct
Biological Process (BP) regulation of apoptotic process 0.004221 Informative Inherited
Biological Process (BP) apoptotic process 0.8945 Informative Inherited
Biological Process (BP) response to organic nitrogen 1 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 0.1639 Informative Inherited
Biological Process (BP) cellular response to endogenous stimulus 1 Informative Inherited
Biological Process (BP) cellular response to nitrogen compound 0.8129 Informative Inherited
Biological Process (BP) growth 0.6432 Informative Inherited
Biological Process (BP) tissue morphogenesis 0.5237 Informative Inherited
Biological Process (BP) epithelium development 0.6029 Informative Inherited
Biological Process (BP) tube development 0.331 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 1 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 0.5587 Informative Inherited
Biological Process (BP) response to hormone stimulus 0.00201 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.003593 Informative Inherited
Biological Process (BP) positive regulation of catalytic activity 1 Informative Inherited
Biological Process (BP) cytoplasmic transport 0.04036 Informative Inherited
Biological Process (BP) regulation of lipid metabolic process 0.4989 Informative Inherited
Biological Process (BP) generation of neurons 0.007593 Informative Inherited
Biological Process (BP) regulation of reproductive process 0.3719 Informative Inherited
Biological Process (BP) regulation of cell cycle process 0.5523 Informative Inherited
Biological Process (BP) regulation of growth 0.001155 Informative Inherited
Biological Process (BP) regulation of locomotion 0.008063 Informative Inherited
Biological Process (BP) regulation of cellular component movement 0.01801 Informative Inherited
Biological Process (BP) peptidyl-amino acid modification 0.1029 Informative Inherited
Biological Process (BP) protein phosphorylation 0.5927 Informative Inherited
Biological Process (BP) intracellular signal transduction 0.2478 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 1 Informative Inherited
Biological Process (BP) negative regulation of protein metabolic process 0.001937 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 1 Informative Inherited
Biological Process (BP) protein localization to organelle 0.005418 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.5714 Informative Inherited
Biological Process (BP) regulation of response to external stimulus 0.02968 Informative Inherited
Biological Process (BP) response to external stimulus 0.9217 Informative Inherited
Biological Process (BP) regulation of nervous system development 1 Informative Inherited
Biological Process (BP) regulation of system process 1 Informative Inherited
Biological Process (BP) regulation of response to stress 0.4515 Informative Inherited
Biological Process (BP) negative regulation of cellular metabolic process 0.3226 Informative Inherited
Biological Process (BP) cellular component movement 0.1381 Informative Inherited
Biological Process (BP) locomotion 0.2863 Informative Inherited
Biological Process (BP) localization of cell 0.006298 Informative Inherited
Biological Process (BP) regulation of hormone levels 0.6324 Informative Inherited
Biological Process (BP) single-organism behavior 0.5676 Informative Inherited
Biological Process (BP) alcohol metabolic process 0.04481 Informative Inherited
Biological Process (BP) steroid metabolic process 0.025 Informative Inherited
Biological Process (BP) single organism reproductive process 0.1795 Informative Inherited
Biological Process (BP) protein transport 0.2101 Informative Inherited
Biological Process (BP) nitrogen compound transport 0.3679 Informative Inherited
Biological Process (BP) secretion 0.1148 Informative Inherited
Biological Process (BP) immune effector process 0.07209 Informative Inherited
Biological Process (BP) chordate embryonic development 0.1961 Informative Inherited
Biological Process (BP) embryonic organ development 0.0412 Informative Inherited
Biological Process (BP) positive regulation of cytokine production 0.0001998 Highly Informative Direct
Biological Process (BP) embryonic placenta development 9.755e-05 Highly Informative Direct
Biological Process (BP) negative regulation of immune system process 0 Highly Informative Direct
Biological Process (BP) positive regulation of immune effector process 3.349e-07 Highly Informative Direct
Biological Process (BP) regulation of lymphocyte mediated immunity 0 Highly Informative Direct
Biological Process (BP) regulation of adaptive immune response based on somatic recombination of immune receptors built from 0 Highly Informative Direct
Biological Process (BP) inflammatory response 8.033e-07 Highly Informative Direct
Biological Process (BP) hemostasis 0.0008344 Highly Informative Direct
Biological Process (BP) feeding behavior 1.28e-08 Highly Informative Direct
Biological Process (BP) negative regulation of cell proliferation 1.738e-09 Highly Informative Direct
Biological Process (BP) response to virus 0.000197 Highly Informative Direct
Biological Process (BP) hormone transport 8.279e-05 Highly Informative Direct
Biological Process (BP) protein import 9.91e-06 Highly Informative Direct
Biological Process (BP) peptidyl-tyrosine phosphorylation 1.911e-05 Highly Informative Direct
Biological Process (BP) cytokine-mediated signaling pathway 4.008e-15 Highly Informative Direct
Biological Process (BP) regulation of proteolysis 0.0001732 Highly Informative Direct
Biological Process (BP) negative regulation of cellular catabolic process 0 Highly Informative Direct
Biological Process (BP) regulation of cell killing 0.0001161 Highly Informative Direct
Biological Process (BP) response to corticosteroid stimulus 3.993e-08 Highly Informative Direct
Biological Process (BP) negative regulation of response to external stimulus 3.806e-10 Highly Informative Direct
Biological Process (BP) response to lipopolysaccharide 4.255e-05 Highly Informative Direct
Biological Process (BP) protein localization to nucleus 3.713e-06 Highly Informative Direct
Biological Process (BP) regulation of cytokine biosynthetic process 5.326e-10 Highly Informative Direct
Biological Process (BP) regulation of protein catabolic process 4.52e-07 Highly Informative Direct
Biological Process (BP) amide transport 0.0005527 Highly Informative Direct
Biological Process (BP) regulation of multi-organism process 6.798e-05 Highly Informative Direct
Biological Process (BP) multi-multicellular organism process 9.999e-05 Highly Informative Direct
Biological Process (BP) protein targeting to nucleus 6.846e-07 Highly Informative Direct
Biological Process (BP) regulation of nitric oxide biosynthetic process 5.45e-10 Highly Informative Direct
Biological Process (BP) positive regulation of cell differentiation 0 Highly Informative Direct
Biological Process (BP) regulation of myeloid cell differentiation 1.186e-13 Highly Informative Direct
Biological Process (BP) regulation of Ras protein signal transduction 3.544e-07 Highly Informative Direct
Biological Process (BP) regulation of protein secretion 0 Highly Informative Direct
Biological Process (BP) regulation of peptidyl-tyrosine phosphorylation 0 Highly Informative Direct
Biological Process (BP) regulation of steroid biosynthetic process 4.449e-06 Highly Informative Direct
Biological Process (BP) coagulation 3.316e-08 Highly Informative Direct
Biological Process (BP) positive regulation of cell activation 0 Highly Informative Direct
Biological Process (BP) positive regulation of secretion 8.706e-12 Highly Informative Direct
Biological Process (BP) negative regulation of secretion 2.417e-08 Highly Informative Direct
Biological Process (BP) regulation of DNA metabolic process 2.644e-11 Highly Informative Direct
Biological Process (BP) positive regulation of sequence-specific DNA binding transcription factor activity 1.909e-11 Highly Informative Direct
Biological Process (BP) nuclear import 8.567e-07 Highly Informative Direct
Biological Process (BP) positive regulation of protein transport 0 Highly Informative Direct
Biological Process (BP) negative regulation of protein transport 0.0003433 Highly Informative Direct
Biological Process (BP) negative regulation of multicellular organismal process 2.442e-14 Highly Informative Direct
Biological Process (BP) morphogenesis of a branching epithelium 1.27e-07 Highly Informative Direct
Biological Process (BP) mammary gland epithelium development 7.308e-05 Highly Informative Direct
Biological Process (BP) connective tissue development 1.223e-05 Highly Informative Direct
Biological Process (BP) leukocyte proliferation 1.664e-06 Highly Informative Direct
Biological Process (BP) positive regulation of leukocyte proliferation 2.743e-10 Highly Informative Direct
Biological Process (BP) regulation of leukocyte differentiation 0 Highly Informative Direct
Biological Process (BP) regulation of lymphocyte activation 0.1084 Highly Informative Inherited
Biological Process (BP) cellular response to biotic stimulus 0.01491 Highly Informative Inherited
Biological Process (BP) epithelial tube morphogenesis 0.6277 Highly Informative Inherited
Biological Process (BP) developmental growth 0.412 Highly Informative Inherited
Biological Process (BP) cellular response to peptide hormone stimulus 0.2101 Highly Informative Inherited
Biological Process (BP) transmembrane receptor protein tyrosine kinase signaling pathway 0.329 Highly Informative Inherited
Biological Process (BP) regulation of innate immune response 1 Highly Informative Inherited
Biological Process (BP) regulation of mononuclear cell proliferation 1 Highly Informative Inherited
Biological Process (BP) T cell activation 0.9776 Highly Informative Inherited
Biological Process (BP) negative regulation of reproductive process 0.01186 Highly Informative Inherited
Biological Process (BP) regulation of organ morphogenesis 0.367 Highly Informative Inherited
Biological Process (BP) response to topologically incorrect protein 0.3934 Highly Informative Inherited
Biological Process (BP) innate immune response 1 Highly Informative Inherited
Biological Process (BP) negative regulation of apoptotic process 0.8257 Highly Informative Inherited
Biological Process (BP) regulation of interleukin-1 production 0.875 Highly Informative Inherited
Biological Process (BP) regulation of response to nutrient levels 1 Highly Informative Inherited
Biological Process (BP) regulation of ion homeostasis 1 Highly Informative Inherited
Biological Process (BP) regulation of neurological system process 0.2943 Highly Informative Inherited
Biological Process (BP) ER-nucleus signaling pathway 0.0505 Highly Informative Inherited
Biological Process (BP) response to endoplasmic reticulum stress 0.006367 Highly Informative Inherited
Biological Process (BP) chemotaxis 1 Highly Informative Inherited
Biological Process (BP) leukocyte migration 0.1627 Highly Informative Inherited
Biological Process (BP) signal release 0.02353 Highly Informative Inherited
Biological Process (BP) regulation of cellular carbohydrate metabolic process 0.03425 Highly Informative Inherited
Biological Process (BP) adult behavior 0.0136 Highly Informative Inherited
Biological Process (BP) sterol metabolic process 0.001815 Highly Informative Inherited
Biological Process (BP) wound healing 1 Highly Informative Inherited
Biological Process (BP) positive regulation of apoptotic process 0.02573 Highly Informative Inherited
Biological Process (BP) lymphocyte differentiation 0.2426 Highly Informative Inherited
Biological Process (BP) leukocyte activation involved in immune response 0.05898 Highly Informative Inherited
Biological Process (BP) regulation of cell adhesion 0.07274 Highly Informative Inherited
Biological Process (BP) leukocyte homeostasis 0.001829 Highly Informative Inherited
Molecular Function (MF) binding 0 Least Informative Direct
Molecular Function (MF) protein binding 0 Moderately Informative Direct
Molecular Function (MF) receptor binding 0 Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) extracellular region 0 Moderately Informative Direct
Cellular Component (CC) vesicle 0.09191 Moderately Informative Inherited
Cellular Component (CC) plasma membrane 0.9764 Moderately Informative Inherited
Cellular Component (CC) extracellular space 0 Informative Direct
Cellular Component (CC) cell surface 9.48e-06 Informative Direct
Cellular Component (CC) secretory granule 2.518e-07 Informative Direct
Cellular Component (CC) external side of plasma membrane 3.206e-09 Highly Informative Direct

Document: GO annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)immune system disease1.344e-07Least InformativeDirect
Disease Ontology (DO)organ system cancer0.0001467Least InformativeDirect
Disease Ontology (DO)nervous system disease0.172Least InformativeInherited
Disease Ontology (DO)lung disease7.987e-13Moderately InformativeDirect
Disease Ontology (DO)skin disease2.662e-09Moderately InformativeDirect
Disease Ontology (DO)disease by infectious agent2.084e-08Moderately InformativeDirect
Disease Ontology (DO)hematologic cancer1.16e-07Moderately InformativeDirect
Disease Ontology (DO)kidney disease5.374e-06Moderately InformativeDirect
Disease Ontology (DO)gastrointestinal system disease1.784e-05Moderately InformativeDirect
Disease Ontology (DO)syndrome0.0002027Moderately InformativeDirect
Disease Ontology (DO)disease of metabolism0.0006911Moderately InformativeDirect
Disease Ontology (DO)hematopoietic system disease0.02434Moderately InformativeInherited
Disease Ontology (DO)bone disease0.1399Moderately InformativeInherited
Disease Ontology (DO)cognitive disorder0.2702Moderately InformativeInherited
Disease Ontology (DO)neurodegenerative disease0.3477Moderately InformativeInherited
Disease Ontology (DO)heart disease0.383Moderately InformativeInherited
Disease Ontology (DO)sensory system disease0.5491Moderately InformativeInherited
Disease Ontology (DO)hypersensitivity reaction type II disease0.8777Moderately InformativeInherited
Disease Ontology (DO)multiple sclerosis1.844e-07InformativeDirect
Disease Ontology (DO)inflammatory bowel disease2.331e-07InformativeDirect
Disease Ontology (DO)hemorrhagic disease5.401e-07InformativeDirect
Disease Ontology (DO)allergic rhinitis2.114e-06InformativeDirect
Disease Ontology (DO)connective tissue cancer0.006882InformativeInherited
Disease Ontology (DO)auditory system disease0.09104InformativeInherited
Disease Ontology (DO)hypersensitivity reaction type IV disease0.1188InformativeInherited
Disease Ontology (DO)kidney failure0.1243InformativeInherited
Disease Ontology (DO)developmental disorder of mental health0.1345InformativeInherited
Disease Ontology (DO)lymphoma0.1482InformativeInherited
Disease Ontology (DO)parasitic helminthiasis infectious disease0.1492InformativeInherited
Disease Ontology (DO)female reproductive organ cancer0.2062InformativeInherited
Disease Ontology (DO)primary immunodeficiency disease0.3263InformativeInherited
Disease Ontology (DO)viral infectious disease0.3516InformativeInherited
Disease Ontology (DO)esophageal disease0.441InformativeInherited
Disease Ontology (DO)arthritis0.924InformativeInherited
Disease Ontology (DO)glucose metabolism disease1InformativeInherited
Disease Ontology (DO)rheumatoid arthritis1.189e-06Highly InformativeDirect
Disease Ontology (DO)opportunistic mycosis3.889e-06Highly InformativeDirect
Disease Ontology (DO)agammaglobulinemia6.107e-05Highly InformativeDirect
Disease Ontology (DO)sarcoidosis0.0001235Highly InformativeDirect
Disease Ontology (DO)otitis media0.0001416Highly InformativeDirect
Disease Ontology (DO)aggressive systemic mastocytosis0.0004119Highly InformativeDirect
Disease Ontology (DO)pertussis0.0008866Highly InformativeDirect
Disease Ontology (DO)eating disorder0.003476Highly InformativeInherited

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)immune system phenotype0.0008891Least InformativeDirect
Mammalian Phenotype (MP)cellular phenotype0.09216Least InformativeInherited
Mammalian Phenotype (MP)nervous system phenotype0.2249Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.2593Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.7842Least InformativeInherited
Mammalian Phenotype (MP)altered susceptibility to infection1.672e-08Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal protein level1.015e-05Moderately InformativeDirect
Mammalian Phenotype (MP)liver/biliary system phenotype5.54e-05Moderately InformativeDirect
Mammalian Phenotype (MP)tumorigenesis0.0001625Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal gland morphology0.0002855Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal cell differentiation0.0005674Moderately InformativeDirect
Mammalian Phenotype (MP)respiratory system phenotype0.0007384Moderately InformativeDirect
Mammalian Phenotype (MP)integument phenotype0.001607Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune serum protein physiology0.002863Moderately InformativeInherited
Mammalian Phenotype (MP)digestive/alimentary phenotype0.00294Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal professional antigen presenting cell morphology0.007471Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal bone marrow cell morphology/development0.0124Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal inflammatory response0.03612Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic cell number0.03901Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal leukopoiesis0.05048Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal skeleton morphology0.06567Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune cell physiology0.08007Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell-mediated immunity0.08445Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal adaptive immunity0.09447Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal postnatal growth/weight/body size0.1046Moderately InformativeInherited
Mammalian Phenotype (MP)behavior/neurological phenotype0.2952Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal nervous system physiology0.3128Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal lymphocyte morphology0.3604Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune system organ morphology0.6698Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal craniofacial morphology1Moderately InformativeInherited
Mammalian Phenotype (MP)increased susceptibility to infection1.414e-09InformativeDirect
Mammalian Phenotype (MP)decreased hematopoietic cell number5.1e-08InformativeDirect
Mammalian Phenotype (MP)autoimmune response5.646e-08InformativeDirect
Mammalian Phenotype (MP)abnormal mammary gland morphology0.0001332InformativeDirect
Mammalian Phenotype (MP)abnormal female reproductive system physiology0.0006477InformativeDirect
Mammalian Phenotype (MP)abnormal antigen presentation0.0008509InformativeDirect
Mammalian Phenotype (MP)abnormal digestive system physiology0.003593InformativeInherited
Mammalian Phenotype (MP)abnormal T cell differentiation0.009048InformativeInherited
Mammalian Phenotype (MP)abnormal intestine morphology0.01868InformativeInherited
Mammalian Phenotype (MP)abnormal circulating cytokine level0.02299InformativeInherited
Mammalian Phenotype (MP)abnormal T cell physiology0.0251InformativeInherited
Mammalian Phenotype (MP)abnormal enzyme/ coenzyme level0.02853InformativeInherited
Mammalian Phenotype (MP)abnormal hepatobiliary system physiology0.06392InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin secretion0.08503InformativeInherited
Mammalian Phenotype (MP)abnormal cranium morphology0.1041InformativeInherited
Mammalian Phenotype (MP)abnormal lymph node morphology0.114InformativeInherited
Mammalian Phenotype (MP)abnormal circulating amino acid level0.1311InformativeInherited
Mammalian Phenotype (MP)abnormal B cell physiology0.1407InformativeInherited
Mammalian Phenotype (MP)increased inflammatory response0.1784InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin level0.2623InformativeInherited
Mammalian Phenotype (MP)abnormal respiration0.9223InformativeInherited
Mammalian Phenotype (MP)altered susceptibility to autoimmune disorder3.947e-09Highly InformativeDirect
Mammalian Phenotype (MP)abnormal mammary gland development2.474e-07Highly InformativeDirect
Mammalian Phenotype (MP)decreased interleukin-10 secretion4.24e-06Highly InformativeDirect
Mammalian Phenotype (MP)increased circulating interleukin-17 level1.78e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal intestinal mucosa morphology2.692e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal airway responsiveness6.122e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal glial cell physiology7.882e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal level of surface class II molecules0.0001224Highly InformativeDirect
Mammalian Phenotype (MP)colitis0.0005209Highly InformativeDirect
Mammalian Phenotype (MP)abnormal sleep pattern0.0009987Highly InformativeDirect
Mammalian Phenotype (MP)abnormal mesenteric lymph node morphology0.001076Highly InformativeInherited
Mammalian Phenotype (MP)respiratory system inflammation0.01301Highly InformativeInherited
Mammalian Phenotype (MP)abnormal myeloid dendritic cell morphology0.033Highly InformativeInherited
Mammalian Phenotype (MP)abnormal jaw morphology0.05376Highly InformativeInherited
Mammalian Phenotype (MP)abnormal circulating alanine transaminase level0.08175Highly InformativeInherited
Mammalian Phenotype (MP)abnormal ovulation cycle0.0864Highly InformativeInherited

Document: MP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processInflammatory response3.282e-07InformativeDirect
Biological processCell adhesion1.117e-05InformativeDirect
Biological processAcute phase0Highly InformativeDirect
Biological processAntiviral defense0Highly InformativeDirect
Biological processGrowth regulation0Highly InformativeDirect
Biological processAdaptive immunity2.329e-16Highly InformativeDirect
Cellular componentSecreted0Moderately InformativeDirect
Coding sequence diversityPolymorphism0.0001685Moderately InformativeDirect
DiseaseObesity0InformativeDirect
DomainSignal0Least InformativeDirect
Molecular functionZinc8.093e-08Least InformativeDirect
Post-translational modificationGrowth factor0InformativeDirect
Post-translational modificationCytokine0Highly InformativeDirect
Post-translational modificationHormone0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationDisulfide bond0Least InformativeDirect
Post-translational modificationPyrrolidone carboxylic acid0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR009079 SSF47266 Protein matches
Abstract

These domains display a core structure consisting of a closed bundle of four helices in a left-handed twist, with two crossover connections. Proteins containing such domains include long-chain cytokines, such as leukaemia inhibitory factor (LIF) [PubMed14511776], the growth hormone somatotropin [PubMed14507421], interleukin-6 [PubMed9118960] and leptin [PubMed9144295]; short-chain cytokines, such as erythropoietin [PubMed9783743], stem cell factor (SCF) [PubMed10880433], macrophage colony-stimulating factor (M-CSF) and interleukin-2, -3, -4, -5 and -13; and interferons/interleukin-10.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Mouse Phenotype (MP) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 43 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a 4-helical cytokines domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 43 hidden Markov models representing the 4-helical cytokines superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Mouse Phenotype (MP) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) · Internal database links ]