SUPERFAMILY 1.75 HMM library and genome assignments server


Viral leader polypeptide zinc finger superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Viral leader polypeptide zinc finger [ 144250]
Superfamily:   Viral leader polypeptide zinc finger [ 144251]
Families:   Viral leader polypeptide zinc finger [ 144252]


Superfamily statistics
Genomes (0) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 0 50 1
Proteins 0 50 1


Functional annotation
General category Other
Detailed category Viral proteins

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of metabolic process 0 Least Informative Direct
Biological Process (BP) regulation of cellular process 0 Least Informative Direct
Biological Process (BP) protein metabolic process 2.736e-06 Least Informative Direct
Biological Process (BP) response to stimulus 0.0008426 Least Informative Direct
Biological Process (BP) multi-organism process 0 Moderately Informative Direct
Biological Process (BP) positive regulation of metabolic process 0 Moderately Informative Direct
Biological Process (BP) positive regulation of cellular process 0 Moderately Informative Direct
Biological Process (BP) regulation of signal transduction 7.513e-08 Moderately Informative Direct
Biological Process (BP) regulation of localization 4.344e-05 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 0.006336 Moderately Informative Inherited
Biological Process (BP) regulation of cellular catabolic process 0 Informative Direct
Biological Process (BP) regulation of immune effector process 6.167e-13 Informative Direct
Biological Process (BP) regulation of intracellular transport 8.233e-13 Informative Direct
Biological Process (BP) regulation of defense response 3.564e-11 Informative Direct
Biological Process (BP) regulation of immune response 1.335e-10 Informative Direct
Biological Process (BP) proteolysis 2.796e-10 Informative Direct
Biological Process (BP) negative regulation of signaling 2.875e-10 Informative Direct
Biological Process (BP) negative regulation of cell communication 2.996e-10 Informative Direct
Biological Process (BP) negative regulation of response to stimulus 1.05e-09 Informative Direct
Biological Process (BP) defense response 3.969e-09 Informative Direct
Biological Process (BP) response to other organism 0.06684 Informative Inherited
Biological Process (BP) symbiosis, encompassing mutualism through parasitism 0 Highly Informative Direct
Biological Process (BP) modification of morphology or physiology of other organism 0 Highly Informative Direct
Biological Process (BP) regulation of autophagy 0 Highly Informative Direct
Biological Process (BP) positive regulation of catabolic process 0 Highly Informative Direct
Biological Process (BP) multi-organism cellular process 0 Highly Informative Direct
Biological Process (BP) negative regulation of immune system process 2.225e-13 Highly Informative Direct
Biological Process (BP) regulation of multi-organism process 4.339e-09 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Moderately InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0Moderately InformativeDirect
Enzyme Commission (EC)RNA-directed RNA polymerase0InformativeDirect
Enzyme Commission (EC)In phosphorous-containing anhydrides0InformativeDirect
Enzyme Commission (EC)Cysteine endopeptidases0InformativeDirect
Enzyme Commission (EC)Nucleoside-triphosphate phosphatase0Highly InformativeDirect
Enzyme Commission (EC)Picornain 3C0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport1.338e-05Least InformativeDirect
Biological processHost-virus interaction0Moderately InformativeDirect
Biological processIon transport4.504e-10Moderately InformativeDirect
Biological processVirus entry into host cell0InformativeDirect
Biological processEukaryotic host gene expression shutoff by virus0InformativeDirect
Biological processViral RNA replication4.713e-16InformativeDirect
Biological processViral immunoevasion0.000704InformativeDirect
Cellular componentMembrane0.0004771Least InformativeDirect
Cellular componentCapsid protein0InformativeDirect
Cellular componentHost cytoplasm0InformativeDirect
Cellular componentHost membrane3.665e-14InformativeDirect
Cellular componentHost nucleus4.093e-13InformativeDirect
Cellular componentHost cytoplasmic vesicle0Highly InformativeDirect
Molecular functionNucleotide-binding0.0002095Least InformativeDirect
Molecular functionRNA-binding1.515e-06Moderately InformativeDirect
Molecular functionATP-binding7.481e-05Moderately InformativeDirect
Post-translational modificationHydrolase1.358e-05Least InformativeDirect
Post-translational modificationTransferase9.026e-05Least InformativeDirect
Post-translational modificationProtease3.602e-10Moderately InformativeDirect
Post-translational modificationNucleotidyltransferase9.176e-10Moderately InformativeDirect
Post-translational modificationThiol protease1.089e-14InformativeDirect
Post-translational modificationIon channel2.287e-14InformativeDirect
Post-translational modificationHelicase6.436e-12InformativeDirect
Post-translational modificationRNA-directed RNA polymerase0Highly InformativeDirect
Post-translational modificationViral ion channel0Highly InformativeDirect
Post-translational modificationMyristate0InformativeDirect
Post-translational modificationCovalent protein-RNA linkage9.083e-16Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Viral leader polypeptide zinc finger domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Viral leader polypeptide zinc finger superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]