SUPERFAMILY 1.75 HMM library and genome assignments server

Viral leader polypeptide zinc finger superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Viral leader polypeptide zinc finger [ 144250]
Superfamily:   Viral leader polypeptide zinc finger [ 144251]
Families:   Viral leader polypeptide zinc finger [ 144252]


Superfamily statistics
Genomes (0) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 0 50 1
Proteins 0 50 1


Functional annotation
General category Other
Detailed category Viral proteins

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of metabolic process 0 Least Informative Direct
Biological Process (BP) regulation of cellular process 0 Least Informative Direct
Biological Process (BP) positive regulation of biological process 0 Least Informative Direct
Biological Process (BP) protein metabolic process 0.00000314 Least Informative Direct
Biological Process (BP) response to stimulus 0.000924 Least Informative Direct
Biological Process (BP) positive regulation of metabolic process 0 Moderately Informative Direct
Biological Process (BP) multi-organism process 0 Moderately Informative Direct
Biological Process (BP) positive regulation of cellular process 0 Moderately Informative Direct
Biological Process (BP) regulation of biological quality 0 Moderately Informative Direct
Biological Process (BP) regulation of signal transduction 0.00000008712 Moderately Informative Direct
Biological Process (BP) response to external stimulus 0.0000002039 Moderately Informative Direct
Biological Process (BP) regulation of localization 0.0000495 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 0.00765 Moderately Informative Inherited
Biological Process (BP) regulation of cellular catabolic process 0 Informative Direct
Biological Process (BP) positive regulation of catabolic process 0 Informative Direct
Biological Process (BP) regulation of immune effector process 0.0000000000007412 Informative Direct
Biological Process (BP) regulation of intracellular transport 0.000000000001046 Informative Direct
Biological Process (BP) negative regulation of immune system process 0.000000000001589 Informative Direct
Biological Process (BP) regulation of defense response 0.00000000004032 Informative Direct
Biological Process (BP) regulation of response to external stimulus 0.0000000000446 Informative Direct
Biological Process (BP) regulation of immune response 0.0000000001522 Informative Direct
Biological Process (BP) proteolysis 0.0000000003309 Informative Direct
Biological Process (BP) negative regulation of signaling 0.0000000004831 Informative Direct
Biological Process (BP) negative regulation of cell communication 0.0000000005016 Informative Direct
Biological Process (BP) negative regulation of response to stimulus 0.000000001848 Informative Direct
Biological Process (BP) regulation of autophagy 0 Highly Informative Direct
Biological Process (BP) modification of morphology or physiology of other organism 0 Highly Informative Direct
Biological Process (BP) multi-organism cellular process 0 Highly Informative Direct
Biological Process (BP) symbiosis, encompassing mutualism through parasitism 0 Highly Informative Direct
Biological Process (BP) negative regulation of immune effector process 0.000000000000001913 Highly Informative Direct
Biological Process (BP) negative regulation of immune response 0.00000000000001071 Highly Informative Direct
Biological Process (BP) negative regulation of response to external stimulus 0.0000000000001162 Highly Informative Direct
Biological Process (BP) negative regulation of defense response 0.0000000000001254 Highly Informative Direct
Biological Process (BP) regulation of innate immune response 0.000000000001099 Highly Informative Direct
Biological Process (BP) negative regulation of intracellular signal transduction 0.000000000001703 Highly Informative Direct
Biological Process (BP) regulation of multi-organism process 0.00000001392 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Moderately InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0Moderately InformativeDirect
Enzyme Commission (EC)RNA-directed RNA polymerase0InformativeDirect
Enzyme Commission (EC)In phosphorous-containing anhydrides0InformativeDirect
Enzyme Commission (EC)Cysteine endopeptidases0InformativeDirect
Enzyme Commission (EC)Nucleoside-triphosphate phosphatase0Highly InformativeDirect
Enzyme Commission (EC)Picornain 3C0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0.00001344Least InformativeDirect
Biological processHost-virus interaction0Moderately InformativeDirect
Biological processIon transport0.0000000004524Moderately InformativeDirect
Biological processEukaryotic host gene expression shutoff by virus0InformativeDirect
Biological processVirus entry into host cell0InformativeDirect
Biological processViral RNA replication4.711e-16InformativeDirect
Biological processViral immunoevasion0.0006987InformativeDirect
Cellular componentMembrane0.0004809Least InformativeDirect
Cellular componentHost cytoplasm0InformativeDirect
Cellular componentCapsid protein0InformativeDirect
Cellular componentHost membrane0.00000000000003651InformativeDirect
Cellular componentHost nucleus0.0000000000004082InformativeDirect
Cellular componentHost cytoplasmic vesicle0Highly InformativeDirect
Molecular functionNucleotide-binding0.000209Least InformativeDirect
Molecular functionRNA-binding0.000001522Moderately InformativeDirect
Molecular functionATP-binding0.00007469Moderately InformativeDirect
Post-translational modificationHydrolase0.00001383Least InformativeDirect
Post-translational modificationTransferase0.00009044Least InformativeDirect
Post-translational modificationProtease0.0000000003595Moderately InformativeDirect
Post-translational modificationNucleotidyltransferase0.0000000009125Moderately InformativeDirect
Post-translational modificationThiol protease0.0000000000000109InformativeDirect
Post-translational modificationIon channel0.00000000000002287InformativeDirect
Post-translational modificationHelicase0.000000000006523InformativeDirect
Post-translational modificationRNA-directed RNA polymerase0Highly InformativeDirect
Post-translational modificationViral ion channel0Highly InformativeDirect
Post-translational modificationMyristate0InformativeDirect
Post-translational modificationCovalent protein-RNA linkage9.055e-16Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Viral leader polypeptide zinc finger domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Viral leader polypeptide zinc finger superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]