SUPERFAMILY 1.75 HMM library and genome assignments server


CorA soluble domain-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   CorA soluble domain-like [ 143864]
Superfamily:   CorA soluble domain-like [ 143865]
Families:   CorA soluble domain-like [ 143866]


Superfamily statistics
Genomes (2,367) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,687 28,889 3
Proteins 4,682 28,876 3


Functional annotation
General category Processes_IC
Detailed category Ion metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 1.759e-05 Least Informative Direct
Biological Process (BP) ion transport 4.995e-05 Moderately Informative Direct
Biological Process (BP) metal ion transport 1.26e-14 Informative Direct
Molecular Function (MF) transporter activity 5.772e-09 Moderately Informative Direct
Molecular Function (MF) inorganic cation transmembrane transporter activity 4.032e-13 Informative Direct
Molecular Function (MF) metal ion transmembrane transporter activity 0.1317 Informative Inherited

Document: GO annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processIon transport0Moderately InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentCell membrane7.799e-10Moderately InformativeDirect
Cellular componentCell inner membrane1.24e-13InformativeDirect
DomainTransmembrane0Least InformativeDirect
Molecular functionZinc1.164e-08Least InformativeDirect
Molecular functionMagnesium2.982e-12Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a CorA soluble domain-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the CorA soluble domain-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · UniProtKB KeyWords (KW) · Internal database links ]