SUPERFAMILY 1.75 HMM library and genome assignments server

TFB5-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   TFB5-like [ 142896]
Superfamily:   TFB5-like [ 142897]
Families:   TFB5-like [ 142898]


Superfamily statistics
Genomes (392) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 480 490 1
Proteins 480 490 1


Functional annotation
General category Regulation
Detailed category DNA-binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process0.000071370.0001816Least InformativeDirect
Biological Process (BP)nitrogen compound metabolic process0.00029890.0004867Least InformativeDirect
Biological Process (BP)heterocycle metabolic process0.000069010.0001644Least InformativeDirect
Biological Process (BP)organic cyclic compound metabolic process0.00012710.000275Least InformativeDirect
Biological Process (BP)response to stimulus0.0014270.007273Least InformativeInherited
Biological Process (BP)cellular macromolecule metabolic process0.00014090.001125Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.0019790.001883Least InformativeInherited
Biological Process (BP)single-organism cellular process0.017770.06667Least InformativeInherited
Biological Process (BP)cellular response to stress0.00000032140.000001831Moderately InformativeDirect
Biological Process (BP)DNA repair0.000000000037130.000000001023InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.0001816 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 0.0004867 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.0001644 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.000275 Least Informative Direct
Biological Process (BP) response to stimulus 0.007273 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.001125 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.001883 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.06667 Least Informative Inherited
Biological Process (BP) cellular response to stress 0.000001831 Moderately Informative Direct
Biological Process (BP) DNA repair 0.000000001023 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processDNA damage0Moderately InformativeDirect
Biological processTranscription regulation0Moderately InformativeDirect
Cellular componentNucleus0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a TFB5-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the TFB5-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]