SUPERFAMILY 1.75 HMM library and genome assignments server

Pseudo ankyrin repeat-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   Pseudo ankyrin repeat-like [ 140860]
Families:   Pseudo ankyrin repeat [ 140861]


Superfamily statistics
Genomes (335) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 1,231 2,005 1
Proteins 1,168 1,910 1


Functional annotation
General category Processes_EC
Detailed category Cell adhesion

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular macromolecule metabolic process 0 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.00000000000005833 Least Informative Direct
Biological Process (BP) multicellular organismal process 0.00000000008279 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.0000000004687 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 0.0000000008099 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 0.000000003368 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.000000003372 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.000000007508 Least Informative Direct
Biological Process (BP) regulation of metabolic process 0.000005555 Least Informative Direct
Biological Process (BP) multi-organism process 0 Moderately Informative Direct
Biological Process (BP) reproductive process 0 Moderately Informative Direct
Biological Process (BP) regulation of gene expression 0 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 0.00000000000001071 Moderately Informative Direct
Biological Process (BP) single organism reproductive process 0 Informative Direct
Biological Process (BP) sexual reproduction 0 Informative Direct
Biological Process (BP) organelle fission 0 Informative Direct
Biological Process (BP) cell division 0 Informative Direct
Biological Process (BP) multicellular organismal reproductive process 0 Informative Direct
Biological Process (BP) ncRNA metabolic process 0 Informative Direct
Biological Process (BP) DNA modification 0 Highly Informative Direct
Biological Process (BP) nuclear division 0 Highly Informative Direct
Biological Process (BP) spermatogenesis 0 Highly Informative Direct
Biological Process (BP) meiotic cell cycle 0 Highly Informative Direct
Biological Process (BP) regulation of gene expression, epigenetic 0 Highly Informative Direct
Cellular Component (CC) cytoplasmic part 0 Least Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00000000000003814 Least Informative Direct
Cellular Component (CC) ribonucleoprotein complex 0 Moderately Informative Direct
Cellular Component (CC) cytoplasmic ribonucleoprotein granule 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processDifferentiation0Moderately InformativeDirect
Biological processMeiosis0InformativeDirect
Biological processSpermatogenesis0Highly InformativeDirect
Biological processRNA-mediated gene silencing0Highly InformativeDirect
Cellular componentCytoplasm0.0000006009Least InformativeDirect
DomainRepeat0Least InformativeDirect
DomainANK repeat0InformativeDirect
Post-translational modificationDevelopmental protein0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Pseudo ankyrin repeat-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Pseudo ankyrin repeat-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]