SUPERFAMILY 1.75 HMM library and genome assignments server


Pseudo ankyrin repeat-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   Pseudo ankyrin repeat-like [ 140860]
Families:   Pseudo ankyrin repeat [ 140861]


Superfamily statistics
Genomes (334) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 1,229 2,005 1
Proteins 1,166 1,910 1


Functional annotation
General category Processes_EC
Detailed category Cell adhesion

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular macromolecule metabolic process 0 Least Informative Direct
Biological Process (BP) single-organism cellular process 1.32e-10 Least Informative Direct
Biological Process (BP) multicellular organismal process 1.965e-10 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 4.648e-10 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 8.124e-10 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 3.168e-09 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 3.325e-09 Least Informative Direct
Biological Process (BP) regulation of metabolic process 2.6e-06 Least Informative Direct
Biological Process (BP) regulation of gene expression 0 Moderately Informative Direct
Biological Process (BP) reproduction 0 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 1.091e-14 Moderately Informative Direct
Biological Process (BP) sexual reproduction 0 Informative Direct
Biological Process (BP) multicellular organismal reproductive process 0 Informative Direct
Biological Process (BP) cell cycle process 0 Informative Direct
Biological Process (BP) cellular process involved in reproduction 0 Informative Direct
Biological Process (BP) ncRNA metabolic process 0 Informative Direct
Biological Process (BP) single organism reproductive process 0 Informative Direct
Biological Process (BP) DNA metabolic process 0 Informative Direct
Biological Process (BP) spermatogenesis 0 Highly Informative Direct
Biological Process (BP) regulation of gene expression, epigenetic 0 Highly Informative Direct
Biological Process (BP) DNA modification 0 Highly Informative Direct
Biological Process (BP) meiosis 0 Highly Informative Direct
Cellular Component (CC) cytoplasmic part 0 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 3.486e-14 Least Informative Direct
Cellular Component (CC) ribonucleoprotein complex 0 Moderately Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processDifferentiation0Moderately InformativeDirect
Biological processMeiosis0InformativeDirect
Biological processSpermatogenesis0Highly InformativeDirect
Biological processRNA-mediated gene silencing0Highly InformativeDirect
Cellular componentCytoplasm6.036e-07Least InformativeDirect
DomainRepeat0Least InformativeDirect
DomainANK repeat0InformativeDirect
Post-translational modificationDevelopmental protein0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Pseudo ankyrin repeat-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Pseudo ankyrin repeat-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]