SUPERFAMILY 1.75 HMM library and genome assignments server


AN1-like Zinc finger superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   AN1-like Zinc finger [ 118309]
Superfamily:   AN1-like Zinc finger [ 118310]
Families:   AN1-like Zinc finger [ 118311] (6)


Superfamily statistics
Genomes (520) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 3,290 0 6
Proteins 2,650 0 6


Functional annotation
General category Regulation
Detailed category DNA-binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0.2227 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.6357 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.6915 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.7135 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.9141 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.8031 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.7556 Least Informative Inherited
Biological Process (BP) localization 0.7722 Least Informative Inherited
Biological Process (BP) macromolecule localization 0.03597 Moderately Informative Inherited
Biological Process (BP) cellular localization 0.04058 Moderately Informative Inherited
Biological Process (BP) organic substance transport 0.03215 Moderately Informative Inherited
Biological Process (BP) DNA metabolic process 0.009045 Informative Inherited
Biological Process (BP) protein transport 0.001271 Informative Inherited
Molecular Function (MF) hydrolase activity 0.3871 Least Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.00352 Informative Inherited

Document: GO annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)cell0Least InformativeDirect
Xenopus ANatomical entity (XAN)portion of tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)gamete0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)pollen tube cell0.0001372InformativeDirect
Plant structure DEvelopment stage (PDE)pollen development stage7.715e-06Moderately InformativeDirect
Plant structure DEvelopment stage (PDE)L mature pollen stage8.573e-07InformativeDirect
Plant structure DEvelopment stage (PDE)M germinated pollen stage4.362e-06InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0Moderately InformativeDirect
Enzyme Commission (EC)DNA helicase0InformativeDirect
Enzyme Commission (EC)RNA helicase0InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processStress response0InformativeDirect
DomainZinc-finger0Moderately InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionZinc0Least InformativeDirect
Post-translational modificationAcetylation3.578e-07Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a AN1-like Zinc finger domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the AN1-like Zinc finger superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]