SUPERFAMILY 1.75 HMM library and genome assignments server


Proton glutamate symport protein superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Proton glutamate symport protein [ 118214]
Superfamily:   Proton glutamate symport protein [ 118215]
Families:   Proton glutamate symport protein [ 118216]


Superfamily statistics
Genomes (2,143) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 6,511 18,097 1
Proteins 6,440 18,056 1


Functional annotation
General category Processes_IC
Detailed category Transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)localization00Least InformativeDirect
Biological Process (BP)cellular component organization or biogenesis0.040140.5964Least InformativeInherited
Biological Process (BP)developmental process0.046240.2891Least InformativeInherited
Biological Process (BP)response to stimulus0.16610.2353Least InformativeInherited
Biological Process (BP)multicellular organismal process0.0058140.03186Least InformativeInherited
Biological Process (BP)single-organism cellular process0.86671Least InformativeInherited
Biological Process (BP)ion transport00Moderately InformativeDirect
Biological Process (BP)nervous system development0.00058073.689e-05Moderately InformativeDirect
Biological Process (BP)organic substance transport00Moderately InformativeDirect
Biological Process (BP)macromolecular complex subunit organization0.012310.04427Moderately InformativeInherited
Biological Process (BP)cellular component biogenesis0.043620.1729Moderately InformativeInherited
Biological Process (BP)system process0.0058950.0002626Moderately InformativeInherited
Biological Process (BP)regulation of localization0.038260.00144Moderately InformativeInherited
Biological Process (BP)regulation of multicellular organismal process0.010840.06947Moderately InformativeInherited
Biological Process (BP)response to endogenous stimulus0.056020.0005493Moderately InformativeInherited
Biological Process (BP)response to organic substance0.39070.5661Moderately InformativeInherited
Biological Process (BP)response to oxygen-containing compound0.14310.04573Moderately InformativeInherited
Biological Process (BP)organ development0.33350.4375Moderately InformativeInherited
Biological Process (BP)reproduction0.056610.03819Moderately InformativeInherited
Biological Process (BP)single-organism developmental process0.65731Moderately InformativeInherited
Biological Process (BP)response to abiotic stimulus0.0044571.938e-06Moderately InformativeInherited
Biological Process (BP)anion transport00InformativeDirect
Biological Process (BP)response to light stimulus3.336e-067.328e-13InformativeDirect
Biological Process (BP)response to wounding7.353e-051.499e-10InformativeDirect
Biological Process (BP)organic acid transport00InformativeDirect
Biological Process (BP)regulation of system process2.546e-058.286e-06InformativeDirect
Biological Process (BP)single-organism behavior1.125e-100InformativeDirect
Biological Process (BP)nitrogen compound transport1.207e-140InformativeDirect
Biological Process (BP)protein complex assembly8.196e-050.001792InformativeInherited
Biological Process (BP)single organism reproductive process0.084090.03134InformativeInherited
Biological Process (BP)response to organonitrogen compound0.0017293.08e-07InformativeInherited
Biological Process (BP)growth0.0029756.447e-05InformativeInherited
Biological Process (BP)central nervous system development0.0043090.0001236InformativeInherited
Biological Process (BP)positive regulation of transport0.0026182.48e-06InformativeInherited
Biological Process (BP)cell-cell signaling0.0030350.009292InformativeInherited
Biological Process (BP)transmission of nerve impulse0.0019890.01023InformativeInherited
Biological Process (BP)response to acid1.334e-051.335e-12Highly InformativeDirect
Biological Process (BP)dicarboxylic acid transport6.989e-100Highly InformativeDirect
Biological Process (BP)amino acid transport3.222e-100Highly InformativeDirect
Biological Process (BP)aging6.117e-061.588e-10Highly InformativeDirect
Biological Process (BP)telencephalon development1.071e-055.03e-11Highly InformativeDirect
Biological Process (BP)adult behavior0.00023831.198e-08Highly InformativeDirect
Biological Process (BP)response to drug2.144e-066.051e-12Highly InformativeDirect
Biological Process (BP)positive regulation of glucose import1.159e-080Highly InformativeDirect
Biological Process (BP)protein homooligomerization2.05e-072.155e-06Highly InformativeDirect
Molecular Function (MF)binding11Least InformativeInherited
Molecular Function (MF)transporter activity00Moderately InformativeDirect
Molecular Function (MF)anion binding0.019380.0001078Moderately InformativeInherited
Molecular Function (MF)anion transmembrane transporter activity2.291e-060InformativeDirect
Molecular Function (MF)carboxylic acid binding5.851e-051.598e-11InformativeDirect
Molecular Function (MF)active transmembrane transporter activity0.0083133.39e-05InformativeInherited
Molecular Function (MF)metal ion transmembrane transporter activity2.353e-050.004321InformativeInherited
Molecular Function (MF)inorganic cation transmembrane transporter activity0.40170.544InformativeInherited
Molecular Function (MF)sodium ion transmembrane transporter activity6.876e-100Highly InformativeDirect
Molecular Function (MF)secondary active transmembrane transporter activity00Highly InformativeDirect
Molecular Function (MF)amino acid binding2.592e-061.262e-13Highly InformativeDirect
Molecular Function (MF)amino acid transmembrane transporter activity0.0066453.621e-07Highly InformativeInherited
Cellular Component (CC)membrane1.276e-070Least InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle0.0027050.2935Least InformativeInherited
Cellular Component (CC)protein complex0.019220.5557Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.080020.8267Least InformativeInherited
Cellular Component (CC)intrinsic to membrane2.278e-085.194e-05Moderately InformativeDirect
Cellular Component (CC)cell projection9.498e-071.678e-11Moderately InformativeDirect
Cellular Component (CC)plasma membrane part0.0021377.155e-05Moderately InformativeInherited
Cellular Component (CC)cytoskeleton3.22e-050.0111Moderately InformativeInherited
Cellular Component (CC)integral to membrane1.065e-084.157e-10InformativeDirect
Cellular Component (CC)cell leading edge0.00032967.461e-08InformativeDirect
Cellular Component (CC)neuron projection0.042020.09971InformativeInherited
Cellular Component (CC)intermediate filament2.676e-152.411e-11Highly InformativeDirect
Cellular Component (CC)leading edge membrane4.713e-057.194e-10Highly InformativeDirect
Cellular Component (CC)axon part7.366e-057.268e-05Highly InformativeDirect
Cellular Component (CC)cell projection membrane0.0074661.174e-06Highly InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0 Least Informative Direct
Biological Process (BP) biosynthetic process 0.7396 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.8081 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.9991 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.5964 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.03186 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 0.2353 Least Informative Inherited
Biological Process (BP) developmental process 0.2891 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) system process 0.0002626 Moderately Informative Direct
Biological Process (BP) ion transport 0 Moderately Informative Direct
Biological Process (BP) nervous system development 3.689e-05 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 1.938e-06 Moderately Informative Direct
Biological Process (BP) response to endogenous stimulus 0.0005493 Moderately Informative Direct
Biological Process (BP) organic substance transport 0 Moderately Informative Direct
Biological Process (BP) single-organism biosynthetic process 0.01351 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 0.01281 Moderately Informative Inherited
Biological Process (BP) macromolecular complex subunit organization 0.04427 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.1729 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.7448 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.00144 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.06947 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.04573 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) reproduction 0.03819 Moderately Informative Inherited
Biological Process (BP) response to organic substance 0.5661 Moderately Informative Inherited
Biological Process (BP) monocarboxylic acid metabolic process 0.003514 Moderately Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 0.005609 Moderately Informative Inherited
Biological Process (BP) organ development 0.4375 Moderately Informative Inherited
Biological Process (BP) anion transport 0 Informative Direct
Biological Process (BP) central nervous system development 0.0001236 Informative Direct
Biological Process (BP) response to light stimulus 7.328e-13 Informative Direct
Biological Process (BP) response to wounding 1.499e-10 Informative Direct
Biological Process (BP) response to organonitrogen compound 3.08e-07 Informative Direct
Biological Process (BP) organic acid transport 0 Informative Direct
Biological Process (BP) growth 6.447e-05 Informative Direct
Biological Process (BP) regulation of system process 8.286e-06 Informative Direct
Biological Process (BP) single-organism behavior 0 Informative Direct
Biological Process (BP) positive regulation of transport 2.48e-06 Informative Direct
Biological Process (BP) transmembrane transport 1.208e-05 Informative Direct
Biological Process (BP) nitrogen compound transport 0 Informative Direct
Biological Process (BP) monocarboxylic acid biosynthetic process 4.122e-05 Informative Direct
Biological Process (BP) alpha-amino acid biosynthetic process 1.883e-05 Informative Direct
Biological Process (BP) positive regulation of multicellular organismal process 0.005009 Informative Inherited
Biological Process (BP) protein complex assembly 0.001792 Informative Inherited
Biological Process (BP) single organism reproductive process 0.03134 Informative Inherited
Biological Process (BP) cell-cell signaling 0.009292 Informative Inherited
Biological Process (BP) transmission of nerve impulse 0.01023 Informative Inherited
Biological Process (BP) response to acid 1.335e-12 Highly Informative Direct
Biological Process (BP) glutamate metabolic process 2.011e-09 Highly Informative Direct
Biological Process (BP) dicarboxylic acid transport 0 Highly Informative Direct
Biological Process (BP) amino acid transport 0 Highly Informative Direct
Biological Process (BP) aging 1.588e-10 Highly Informative Direct
Biological Process (BP) response to toxic substance 4.679e-05 Highly Informative Direct
Biological Process (BP) telencephalon development 5.03e-11 Highly Informative Direct
Biological Process (BP) adult behavior 1.198e-08 Highly Informative Direct
Biological Process (BP) response to drug 6.051e-12 Highly Informative Direct
Biological Process (BP) positive regulation of glucose import 0 Highly Informative Direct
Biological Process (BP) regulation of synaptic transmission 4.569e-06 Highly Informative Direct
Biological Process (BP) protein homooligomerization 2.155e-06 Highly Informative Direct
Biological Process (BP) sensory perception 0.3002 Highly Informative Inherited
Biological Process (BP) neuromuscular process 0.001136 Highly Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transporter activity 0 Moderately Informative Direct
Molecular Function (MF) anion binding 0.0001078 Moderately Informative Direct
Molecular Function (MF) anion transmembrane transporter activity 0 Informative Direct
Molecular Function (MF) active transmembrane transporter activity 3.39e-05 Informative Direct
Molecular Function (MF) carboxylic acid binding 1.598e-11 Informative Direct
Molecular Function (MF) metal ion transmembrane transporter activity 0.004321 Informative Inherited
Molecular Function (MF) inorganic cation transmembrane transporter activity 0.544 Informative Inherited
Molecular Function (MF) sodium ion transmembrane transporter activity 0 Highly Informative Direct
Molecular Function (MF) amino acid transmembrane transporter activity 3.621e-07 Highly Informative Direct
Molecular Function (MF) secondary active transmembrane transporter activity 0 Highly Informative Direct
Molecular Function (MF) amino acid binding 1.262e-13 Highly Informative Direct
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.2935 Least Informative Inherited
Cellular Component (CC) protein complex 0.5557 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.8267 Least Informative Inherited
Cellular Component (CC) intrinsic to membrane 5.194e-05 Moderately Informative Direct
Cellular Component (CC) cell projection 1.678e-11 Moderately Informative Direct
Cellular Component (CC) extracellular region part 0.0005695 Moderately Informative Direct
Cellular Component (CC) plasma membrane part 7.155e-05 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 0.0111 Moderately Informative Inherited
Cellular Component (CC) integral to membrane 4.157e-10 Informative Direct
Cellular Component (CC) extracellular matrix 3.307e-05 Informative Direct
Cellular Component (CC) intrinsic to plasma membrane 0.0005906 Informative Direct
Cellular Component (CC) cell leading edge 7.461e-08 Informative Direct
Cellular Component (CC) neuron projection 0.09971 Informative Inherited
Cellular Component (CC) proteinaceous extracellular matrix 0.0008527 Highly Informative Direct
Cellular Component (CC) intermediate filament 2.411e-11 Highly Informative Direct
Cellular Component (CC) cell projection membrane 1.174e-06 Highly Informative Direct
Cellular Component (CC) leading edge membrane 7.194e-10 Highly Informative Direct
Cellular Component (CC) axon part 7.268e-05 Highly Informative Direct
Cellular Component (CC) cell body 1.072e-05 Highly Informative Direct
Cellular Component (CC) extracellular matrix part 4.943e-07 Highly Informative Direct

Document: GO annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.1189Least InformativeInherited
Disease Ontology (DO)disease of mental health0Moderately InformativeDirect
Disease Ontology (DO)neurodegenerative disease0.01751Moderately InformativeInherited
Disease Ontology (DO)schizophrenia0InformativeDirect
Disease Ontology (DO)multiple sclerosis0.0006101InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.04245Least InformativeInherited
Mammalian Phenotype (MP)abnormal nervous system physiology0.008034Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal neuron morphology0.03161Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal neuron number0.001142InformativeInherited
Mammalian Phenotype (MP)abnormal nervous system electrophysiology0.007108Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)growth variant0Least InformativeDirect
Worm Phenotype (WP)developmental timing variant0Least InformativeDirect
Worm Phenotype (WP)larval development variant0Least InformativeDirect
Worm Phenotype (WP)larval lethal0Moderately InformativeDirect
Worm Phenotype (WP)sterile progeny0Moderately InformativeDirect

Document: WP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)male organism0Least InformativeDirect
Xenopus ANatomical entity (XAN)cell0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)gonad0Least InformativeDirect
Xenopus ANatomical entity (XAN)gamete0Moderately InformativeDirect

Document: XA annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processAmino-acid transport0Highly InformativeDirect
Biological processSugar transport0Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentCell membrane0Moderately InformativeDirect
Cellular componentCell inner membrane0InformativeDirect
DomainTransmembrane0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Proton glutamate symport protein domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Proton glutamate symport protein superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · UniProtKB KeyWords (KW) · Internal database links ]